{"lab": {"@type": ["Lab", "Item"], "status": "current", "title": "Job Dekker, UMMS", "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "display_title": "Job Dekker, UMMS", "@id": "/labs/job-dekker-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}, "award": {"description": "Funding source is from outside 4DN.", "project": "External", "status": "current", "@type": ["Award", "Item"], "name": "external-award", "center_title": "External", "display_title": "EXTERNAL AWARD", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "center": "External", "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "badges": [{"badge": {"badge_icon": "/static/img/badges/biosample-icon.svg", "status": "released", "@type": ["Badge", "Item"], "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "display_title": "Biosample Metadata Incomplete", "title": "Biosample Metadata Incomplete", "warning": "Biosample Metadata Incomplete", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "badge_classification": "Warning", "@id": "/badges/biosample-metadata-incomplete/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "messages": ["Biosample missing Cell Culture Details"]}], "status": "released", "aliases": ["4dn-dcic-lab:SAMN07512605"], "dbxrefs": ["BioSample:SAMN07512605"], "accession": "4DNBSBHPWLCB", "biosource": [{"lab": {"display_title": "Job Dekker, UMMS", "uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "@id": "/labs/job-dekker-lab/", "status": "current", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}, "award": {"status": "current", "display_title": "EXTERNAL AWARD", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "@type": ["Award", "Item"], "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "tissue": {"display_title": "bursa of Fabricius", "term_name": "bursa of Fabricius", "term_id": "UBERON:0003903", "@id": "/ontology-terms/UBERON:0003903/", "status": "released", "term_url": "http://purl.obolibrary.org/obo/UBERON_0003903", "preferred_name": "bursa of Fabricius", "@type": ["OntologyTerm", "Item"], "uuid": "1bfd1088-3311-4711-8c41-83dbed3db972", "slim_terms": [{"uuid": "111129bc-8535-4448-903e-854af460a233", "preferred_name": "digestive system", "status": "released", "@type": ["OntologyTerm", "Item"], "term_url": "http://purl.obolibrary.org/obo/UBERON_0001007", "term_id": "UBERON:0001007", "@id": "/ontology-terms/UBERON:0001007/", "term_name": "digestive system", "synonyms": ["alimentary tract", "alimentary system", "Entire digestive system", "gut", "gastrointestinal system"], "display_title": "digestive system", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "111120bc-8535-4448-903e-854af460a233", "preferred_name": "mesoderm", "status": "released", "@type": ["OntologyTerm", "Item"], "term_url": "http://purl.obolibrary.org/obo/UBERON_0000926", "term_id": "UBERON:0000926", "@id": "/ontology-terms/UBERON:0000926/", "term_name": "mesoderm", "synonyms": ["entire mesoderm", "embryonic mesoderm", "mesodermal mantle", "Entire mesoderm"], "display_title": "mesoderm", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "aliases": ["4dn-dcic-lab:DT40-CAP-H-AID-GFP-Cdk1as"], "accession": "4DNSRYL63MO8", "cell_line": {"preferred_name": "DT40", "term_name": "DT40", "status": "released", "@id": "/ontology-terms/EFO:0006274/", "term_id": "EFO:0006274", "uuid": "fd057734-0765-4007-b7eb-d71ac7cbef65", "term_url": "http://www.ebi.ac.uk/efo/EFO_0006274", "@type": ["OntologyTerm", "Item"], "display_title": "DT40", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"sex": "unknown", "@id": "/individuals-chicken/4DNINYWTTO3D/", "@type": ["IndividualChicken", "Individual", "Item"], "uuid": "836856fd-a0f7-4daf-afb2-4a098df8e8fc", "status": "released", "display_title": "4DNINYWTTO3D", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "description": "CAPH-AID expressing chicken cell line, expressing Cdk1as, a mutant sensitive to inhibition by 1NM-PP3", "date_created": "2018-10-30T15:04:15.001224+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-10-11T22:24:13.056344+00:00"}, "modifications": [{"display_title": "random integration of GFP and AID-tagged CAP-H gene", "uuid": "0cfd60d9-8ebc-4d33-aee5-0e8510f511a4", "@type": ["Modification", "Item"], "status": "released", "@id": "/modifications/0cfd60d9-8ebc-4d33-aee5-0e8510f511a4/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "random integration of X. laevis Cdk1", "uuid": "4dca1ddb-ab74-44f5-ac84-738b0198886d", "@type": ["Modification", "Item"], "status": "released", "@id": "/modifications/4dca1ddb-ab74-44f5-ac84-738b0198886d/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "Crispr disruption for CDK1 chicken gene", "uuid": "fb27fdf6-4199-4179-8bb0-6101b1404aee", "@type": ["Modification", "Item"], "status": "released", "@id": "/modifications/fb27fdf6-4199-4179-8bb0-6101b1404aee/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "random integration of CAP-H gene", "uuid": "cc47db95-4fd6-4868-a606-8c5f50826812", "@type": ["Modification", "Item"], "status": "released", "@id": "/modifications/cc47db95-4fd6-4868-a606-8c5f50826812/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "CAP-H gene deletion", "uuid": "430cd51c-d2b1-4ea6-b057-6f8d55b40c7f", "@type": ["Modification", "Item"], "status": "released", "@id": "/modifications/430cd51c-d2b1-4ea6-b057-6f8d55b40c7f/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "biosource_type": "immortalized cell line", "cell_line_tier": "Unclassified", "public_release": "2019-10-11", "schema_version": "2", "project_release": "2019-10-11", "@id": "/biosources/4DNSRYL63MO8/", "@type": ["Biosource", "Item"], "uuid": "fa5fef67-fd18-4aa1-a92b-1d8a87cd2d9b", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion - 4DNSRYL63MO8", "external_references": [], "biosource_name": "DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion", "biosource_category": ["Other"], "organism": {"@id": "/organisms/9031/", "uuid": "fed8c206-762f-497f-821b-1c8ff7900bd2", "status": "released", "@type": ["Organism", "Item"], "name": "chicken", "display_title": "G. gallus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "treatments": [{"duration_units": "hour", "@id": "/treatments-agent/697bc0a7-d8d3-4991-8e88-fa4953ad8abd/", "status": "released", "treatment_type": "Chemical", "@type": ["TreatmentAgent", "Treatment", "Item"], "display_title": "1NM-PP1 treatment (2.0 \u03bcM, 13.0h)", "concentration": 2.0, "concentration_units": "\u03bcM", "duration": 13.0, "chemical": "1NM-PP1", "uuid": "697bc0a7-d8d3-4991-8e88-fa4953ad8abd", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@id": "/treatments-agent/75df7ccb-dd0e-4c45-bc39-2b094108fadd/", "status": "released", "treatment_type": "Chemical", "@type": ["TreatmentAgent", "Treatment", "Item"], "display_title": "Auxin treatment (125 \u03bcM)", "concentration": 125, "concentration_units": "\u03bcM", "chemical": "Auxin", "uuid": "75df7ccb-dd0e-4c45-bc39-2b094108fadd", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "description": "DT40; CAPH-AID", "date_created": "2018-10-30T15:04:50.990338+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-10-11T22:13:10.339735+00:00"}, "public_release": "2019-10-11", "schema_version": "2", "project_release": "2019-10-11", "@id": "/biosamples/4DNBSBHPWLCB/", "@type": ["Biosample", "Item"], "uuid": "394eda49-c453-4c05-a09c-efa51a62a45d", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNBSBHPWLCB", "external_references": [{"ref": "BioSample:SAMN07512605", "uri": "https://www.ncbi.nlm.nih.gov/biosample/SAMN07512605"}], "modifications_summary": "None", "modifications_summary_short": "None", "treatments_summary": "1NM-PP1 treatment (2.0 \u03bcM, 13.0h) and Auxin treatment (125 \u03bcM)", "tissue_organ_info": {"tissue_source": "bursa of Fabricius", "organ_system": ["digestive system", "mesoderm"]}, "biosource_summary": "DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion", "biosample_type": "immortalized cells", "biosample_category": ["Other"], "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/biosamples/4DNBSBHPWLCB/", "embedded_path": "badges", "item": {"messages": ["Biosample missing Cell Culture Details"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}]}, "validation-errors": []}