Data Browser
Filter & browse experiments

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

Included Properties

Data Type
  • ExperimentSetReplicate4
  • Experiment Set4
    • Sample Category
  • In vitro Differentiation4
  • WTC-114
    • Organ/System
  • circulatory system4
  • mesoderm4
    • Modifications
  • Crispr2
  • No value2
    • Set Type
  • Replicate4
    • Dataset Group
  • Bruneau lab TBX5 allelic series4
    • 17 Common Properties
     Project
    4DN
     Lab
    Benoit Bruneau, UCSF
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Dataset
    in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
     Organism
    Human
     Sample Type
    in vitro differentiated cells
     Sample Tier
    Unclassified
     Sample
    WTC-11 differentiated to cardiac muscle cell
     Tissue Source
    cardiac muscle cell
     Publication
    Grant ZL et al. (2025) PMID:39829922
     Treatments
    No value
     Assay Details
    Enzyme: Arima - A1, A2
     Center
    Bruneau
     Status
    Released
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES8CZNQCU
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
    TBX5 homozygous (compound heterozygous) WTC-11-derived cardiac myocytes - differentiation day 23
    Enzyme
    Arima - A1, A2
    Benoit Bruneau, UCSF
    4DNES23G2JHL
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
    TBX5 heterozygous WTC-11-derived cardiac myocytes - differentiation day 23
    Enzyme
    Arima - A1, A2
    Benoit Bruneau, UCSF
    4DNESHYMOHEK
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
    Crispr treated, unmodified control WTC-11-derived cardiac myocytes - differentiation day 23
    Enzyme
    Arima - A1, A2
    Benoit Bruneau, UCSF
    4DNESNXD7O8Y
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    in situ Hi-C on an allelic series of iPSCs differentiated to cardiac cells
    Untreated, unmodified WTC-11-derived cardiac myocytes - differentiation day 23
    Enzyme
    Arima - A1, A2
    Benoit Bruneau, UCSF
    - fin -