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22 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate22
  • Experiment Set22
    • Dataset
  • HiC on sync. CAPH-AID chicken cells7
  • HiC on sync. CAPH2-AID chicken cells7
  • HiC on sorted sync. SMC2-AID chicken cells4
  • HiC on unsorted sync. SMC2-AID chicken cells4
    • Sample
  • DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion8
  • DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion7
  • DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption7
    • Organ/System
  • digestive system22
  • mesoderm22
    • Set Type
  • Replicate22
    • Dataset Group
  • HiC on sync. CAPH2-AID chicken cells CAPH-AID, CAPH2-AID, or SMC2-AID22
    • Warnings
    16 Common Properties
     Project
    External
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Chicken
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Tissue Source
    bursa of Fabricius
     Publication
    Gibcus JH et al. (2018) PMID:29348367
     Modifications
    No value
     Treatments
    Chemical
     Assay Details
    Enzyme: HindIII
     Center
    External
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESKM5UQ2L
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    prometaphase block (60m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES1MGX3LX
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    prometaphase (30m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES6FARLK8
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    prometaphase (15m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES3CEBN3H
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    prophase (10m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES57F5K1Y
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    prophase (8m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESYIMR82X
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    G2 block (0m), CAPH2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESTBTENG2
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H2 gene, NCAPH2 disruption, random integration of X. laevis Cdk1, CDK1 disruption
    HiC on sync. CAPH2-AID chicken cells
    G2 block (0m), CAPH2+
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESSU8NFVC
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    prometaphase block (60m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES4RSKMSF
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    prometaphase (30m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESE9ZKE6Z
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    prometaphase (15m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES81PRZLH
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    prophase (10m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES3EAC1H8
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    prophase (8m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESY1WGMMP
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    G2 block (0m), CAPH-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESEC33NM7
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
    HiC on sync. CAPH-AID chicken cells
    G2 block (0m), CAPH+
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESU9VIEWW
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on unsorted sync. SMC2-AID chicken cells
    prometaphase block (75m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES3WY8A3I
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on unsorted sync. SMC2-AID chicken cells
    prometaphase (45m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES5GUEFXM
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on unsorted sync. SMC2-AID chicken cells
    prophase (10m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESWJXT6RB
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on unsorted sync. SMC2-AID chicken cells
    G2 block (0m), SMC2+
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESN22I1UM
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on sorted sync. SMC2-AID chicken cells
    prometaphase block (75m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESFWDJJSL
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on sorted sync. SMC2-AID chicken cells
    prometaphase (45m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES7QUTR6Z
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on sorted sync. SMC2-AID chicken cells
    prophase (10m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESE5Q29E1
    Dilution Hi-C
    DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion
    HiC on sorted sync. SMC2-AID chicken cells
    G2 block (0m), SMC2-
    Enzyme
    HindIII
    Job Dekker, UMMS
    - fin -