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2 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate2
  • Experiment Set2
    • Dataset
  • DNase Hi-C in Hela-S3 cells +/- SF3B1 siRNA0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Organ/System
  • mesoderm2
  • reproductive system2
    • Set Type
  • Replicate2
    • 18 Common Properties
     Project
    External
     Lab
    Todd Waldman, GEORGETOWN
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    HeLa-S3
     Tissue Source
    uterine cervix
     Publication
    Kim JS et al. (2019) PMID:31010829
     Modifications
    No value
     Treatments
    RNAi
     Assay Details
    Enzyme: DNaseI
     Center
    External
     Status
    Released
     Commendations
    No value
     Warnings
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES5OZGN2L
    DNase Hi-C
    HeLa-S3
    DNase Hi-C in Hela-S3 cells +/- SF3B1 siRNA
    treated with SF3B1 siRNA
    Enzyme
    DNaseI
    Todd Waldman, GEORGETOWN
    4DNESGEEV6TJ
    DNase Hi-C
    HeLa-S3
    DNase Hi-C in Hela-S3 cells +/- SF3B1 siRNA
    treated with control scrambled siRNA
    Enzyme
    DNaseI
    Todd Waldman, GEORGETOWN
    - fin -