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Included Properties

Data Type
  • ExperimentSetReplicate6
  • Experiment Set6
    • Dataset
  • DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Organ/System
  • kidney6
  • renal system6
    • Modifications
    Set Type
  • Replicate6
    • Warnings
    16 Common Properties
     Project
    4DN
     Lab
    Christine Disteche, UW
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    Patski
     Tissue Source
    kidney
     Publication
    Bonora G et al. (2018) PMID:29654302
     Treatments
    No value
     Assay Details
    Enzyme: DNaseI
     Center
    NOFIC - Shendure
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESWWRKZDK
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 37 kb including Ds-TR gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESAGFJ56V
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr generated inversion of CTCF site in GRCm38:X:75674046-75674952
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNES49IRGRY
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr inversion of 44 kb including Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESNPYVXDM
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 44 kb including Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESF8PGGTI
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    Crispr deletion of 127 kb 'hinge' region near Dxz4 gene
    Enzyme
    DNaseI
    Christine Disteche, UW
    4DNESG15UT75
    DNase Hi-C
    Patski
    DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
    WT
    Enzyme
    DNaseI
    Christine Disteche, UW
    - fin -