Data Browser
Filter & browse experiments

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

Included Properties

Data Type
  • ExperimentSetReplicate4
  • Experiment Set4
    • Dataset
  • Hi-C and Micro-C on WTC-11 derived iPS cells0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Sample Category
    Sample
    Publication
    Assay Details
    Set Type
  • Replicate4
    • Warnings
    14 Common Properties
     Project
    4DN
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    induced pluripotent stem cells
     Sample Tier
    Unclassified
     Organ/System
    No value
     Tissue Source
    stem cell
     Modifications
    Crispr
     Treatments
    No value
     Center
    NOFIC - Dekker
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESODGV2V2
    Micro-C
    WTC-11 AAVS1-GFP C28
    Hi-C and Micro-C on WTC-11 derived iPS cells
    Micro-C experiments - clone 28
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESPDEZNWX
    in situ Hi-C
    WTC-11 AAVS1-GFP C28
    Hi-C and Micro-C on WTC-11 derived iPS cells
    in situ Hi-C experiments - clone 28
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESAGG7EUC
    Micro-C
    WTC-11 AAVS1-GFP C6
    Hi-C and Micro-C on WTC-11 derived iPS cells
    Micro-C experiments - clone 6
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESJ7S5NDJ
    in situ Hi-C
    WTC-11 AAVS1-GFP C6
    Hi-C and Micro-C on WTC-11 derived iPS cells
    in situ Hi-C experiments - clone 6
    Enzyme
    DpnII
    Job Dekker, UMMS
    - fin -