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Included Properties

Data Type
  • ExperimentSetReplicate2
  • Experiment Set2
    • Dataset
  • Hi-C in HCT1160
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Organ/System
  • digestive system2
  • large intestine2
    • Treatments
    Set Type
  • Replicate2
    • Warnings
    16 Common Properties
     Project
    4DN
     Lab
    Yijun Ruan, JAX
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Tier 2
     Sample Category
    Tier 2
     Sample
    HCT116 (Tier 2)
     Tissue Source
    colon
     Publication
    Kim M et al. (2024) doi:10.1101/2024.03.25.586715
     Modifications
    No value
     Assay Details
    Enzyme: AluI
     Center
    NOFIC - Ruan
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESNYUNZVF
    in situ Hi-C
    HCT116 (Tier 2)
    Hi-C in HCT116
    auxin 6h treatment
    Enzyme
    AluI
    Yijun Ruan, JAX
    4DNESOE1RAS4
    in situ Hi-C
    HCT116 (Tier 2)
    Hi-C in HCT116
    auxin no treatment
    Enzyme
    AluI
    Yijun Ruan, JAX
    - fin -