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2 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate2
  • Experiment Set2
    • Dataset
  • Hi-C on CH12 +/- CTCF ZF domain0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Modifications
  • Crispr1
  • No value1
    • Set Type
  • Replicate2
    • 18 Common Properties
     Project
    External
     Lab
    Rafael Casellas, NIH
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    CH12
     Organ/System
    immune system
     Tissue Source
    B-lymphocyte
     Publication
    Vian L et al. (2018) PMID:29706548
     Treatments
    No value
     Assay Details
    Enzyme: MboI
     Center
    External
     Status
    Released
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES4GDH4BG
    in situ Hi-C
    CH12
    Hi-C on CH12 +/- CTCF ZF domain
    CTCF Zinc Finger Exon9-11 mutation
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNES7C6LBWI
    in situ Hi-C
    CH12
    Hi-C on CH12 +/- CTCF ZF domain
    WT
    Enzyme
    MboI
    Rafael Casellas, NIH
    - fin -