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3 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate3
  • Experiment Set3
    • Dataset
  • Hi-C on CTCF-AID tagged mESCs0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Treatments
  • No value2
  • Chemical1
    • Set Type
  • Replicate3
    • 18 Common Properties
     Project
    External
     Lab
    Benoit Bruneau, UCSF
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Sample
    ES-E14TG2a with CTCF-AID
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Nora EP et al. (2017) PMID:28525758
     Modifications
    No value
     Assay Details
    Enzyme: HindIII
     Center
    External
     Status
    Released
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESIYG3BXA
    Dilution Hi-C
    ES-E14TG2a with CTCF-AID
    Hi-C on CTCF-AID tagged mESCs
    CTCF-depletion by auxin treatment followed by 24h wash-off
    Enzyme
    HindIII
    Benoit Bruneau, UCSF
    4DNES7UKQHOX
    Dilution Hi-C
    ES-E14TG2a with CTCF-AID
    Hi-C on CTCF-AID tagged mESCs
    CTCF-depleted by auxin treatment
    Enzyme
    HindIII
    Benoit Bruneau, UCSF
    4DNES87HWQAX
    Dilution Hi-C
    ES-E14TG2a with CTCF-AID
    Hi-C on CTCF-AID tagged mESCs
    WT - untreated
    Enzyme
    HindIII
    Benoit Bruneau, UCSF
    - fin -