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8 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate8
  • Experiment Set8
    • Dataset
  • Hi-C on E14Tg2 cell line8
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1300
    Modifications
  • Crispr8
  • Stable Transfection6
    • Set Type
  • Replicate8
    • 18 Common Properties
     Project
    External
     Lab
    Giacomo Cavalli, UM
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Sample
    ES-E14TG2a
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Bonev B et al. (2017) PMID:29053968
     Treatments
    No value
     Assay Details
    Enzyme: DpnII
     Center
    External
     Status
    Released
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES1NX2TKW
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    strong zfp608 activation with dCas9-VP64-p65-Hsf1
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESQT4SR5G
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    strong sox4 activation with dCas9-VP64-p65-Hsf1
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNES3Y26CEU
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    zfp608 activation with dCas9-VP64
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESUUFHGKJ
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    sox4 activation with dCas9-VP64
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESGC3Z7E3
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    control - zfp608 gRNA with empty dCas9
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNES68MSHVU
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    control - sox4 gRNA with empty dCas9
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESXS1M9JR
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    control - zfp608 gRNA without dCas9
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESBBYGJFA
    in situ Hi-C
    ES-E14TG2a
    Hi-C on E14Tg2 cell line
    control - sox4 gRNA without dCas9
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    - fin -