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4 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate4
  • Experiment Set4
    • Dataset
  • Hi-C on HAP-1 +/- WAPL or SCC4 KO0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Modifications
  • Crispr3
  • No value1
    • Set Type
  • Replicate4
    • Warnings
    17 Common Properties
     Project
    External
     Lab
    Benjamin Rowland, NKI
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Tier 2
     Sample
    HAP-1
     Organ/System
    No value
     Tissue Source
    blood cell
     Publication
    Haarhuis JHI et al. (2017) PMID:28475897
     Treatments
    No value
     Assay Details
    Enzyme: MboI
     Center
    External
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES76KXUJ3
    in situ Hi-C
    HAP-1
    Hi-C on HAP-1 +/- WAPL or SCC4 KO
    WAPL knock out
    Enzyme
    MboI
    Benjamin Rowland, NKI
    4DNESNLXBFMY
    in situ Hi-C
    HAP-1
    Hi-C on HAP-1 +/- WAPL or SCC4 KO
    SCC4 knock out
    Enzyme
    MboI
    Benjamin Rowland, NKI
    4DNESIU6F8HF
    in situ Hi-C
    HAP-1
    Hi-C on HAP-1 +/- WAPL or SCC4 KO
    WT
    Enzyme
    MboI
    Benjamin Rowland, NKI
    4DNESSQU7B76
    in situ Hi-C
    HAP-1
    Hi-C on HAP-1 +/- WAPL or SCC4 KO
    WAPL SCC4 Double knock out
    Enzyme
    MboI
    Benjamin Rowland, NKI
    - fin -