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Included Properties

Data Type
  • ExperimentSetReplicate3
  • Experiment Set3
    • Dataset
  • Hi-C on WTC-11 differentiated to cardiac muscle cell0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Sample Category
  • In vitro Differentiation3
  • WTC-113
    • Organ/System
    Modifications
    Set Type
  • Replicate3
    • 16 Common Properties
     Project
    4DN
     Lab
    Benoit Bruneau, UCSF
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    in vitro differentiated cells
     Sample Tier
    Unclassified
     Sample
    WTC-11 differentiated to cardiac muscle cell
     Tissue Source
    cardiac muscle cell
     Publication
    Grant ZL et al. (2025) PMID:39829922
     Treatments
    No value
     Assay Details
    Enzyme: DdeI and DpnII
     Center
    Bruneau
     Status
    Released
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESW7WYVHO
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 differentiated to cardiac muscle cell
    20 day differentiatiation to cardiac cells - TBX5 homozygous (compound heterozygous)
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES4NO6DRP
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 differentiated to cardiac muscle cell
    20 day differentiatiation to cardiac cells - TBX5 heterozygous
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES9ZDUTHD
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 differentiated to cardiac muscle cell
    20 day differentiatiation to cardiac cells - WT
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    - fin -