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Included Properties

Data Type
  • ExperimentSetReplicate9
  • Experiment Set9
    • Dataset
  • Hi-C on Zebrafish embryos9
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1299
    Treatments
  • No value6
  • Chemical3
    • Set Type
  • Replicate9
    • Warnings
    17 Common Properties
     Project
    4DN
     Lab
    Brad Cairns, UTAH
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Zebrafish
     Sample Type
    whole organisms
     Sample Tier
    Unclassified
     Sample Category
    Multicellular Tissue
     Sample
    Zebrafish Embryo
     Organ/System
    No value
     Tissue Source
    No value
     Publication
    Wike CL et al. (2021) PMID:34006569
     Modifications
    No value
     Assay Details
    Enzyme: MboI
     Center
    TCPA - Cairns
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESV5PGOUC
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    2.25hpf, dechorionated
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNES4G1HPQC
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    pre-fertilization (sperm)
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESVZFWQZX
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    4hpf, SGC treated
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESWMLWNGZ
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    4hpf, Flavopiridol treated
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESI8KI62W
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    4hpf, DMSO treated
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNES9YQ1GX9
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    24hpf
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESTJOLVFJ
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    5.3hpf
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESG4K7J7U
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    4hpf
    Enzyme
    MboI
    Brad Cairns, UTAH
    4DNESGHJXSRM
    in situ Hi-C
    Zebrafish Embryo
    Hi-C on Zebrafish embryos
    2.25hpf
    Enzyme
    MboI
    Brad Cairns, UTAH
    - fin -