Data Browser
Filter & browse experiments

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

5 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate5
  • Experiment Set5
    • Dataset
  • Hi-C on mESC during neural differentiation0
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 91 More1308
    Sample Type
  • stem cells4
  • in vitro differentiated cells1
    • Sample Category
    Sample
    Set Type
  • Replicate5
    • Warnings
    15 Common Properties
     Project
    External
     Lab
    Giacomo Cavalli, UM
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Tier
    Unclassified
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Bonev B et al. (2017) PMID:29053968
     Modifications
    No value
     Treatments
    No value
     Assay Details
    Enzyme: DpnII
     Center
    External
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESU4Y9CBF
    in situ Hi-C
    mESC line with Oct4-GFP
    Hi-C on mESC during neural differentiation
    control cells, selected for G0G1, but not GFP on Oct4-GFP cells
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESXI5NKKT
    in situ Hi-C
    mESC line with Oct4-GFP
    Hi-C on mESC during neural differentiation
    control cells, selected by Oct4-GFP+, but not GOG1 on Oct4-GFP cells
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESUCLJAZ8
    in situ Hi-C
    mESC line with Oct4-GFP
    Hi-C on mESC during neural differentiation
    control cells, unsorted Oct4-GFP cells
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESJ9SIAV5
    in situ Hi-C
    46C with Sox1-GFP
    Hi-C on mESC during neural differentiation
    G0G1 neural progenitors cells (FACS sorted, Sox1-GFP+)
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    4DNESDXUWBD9
    in situ Hi-C
    mESC line with Oct4-GFP
    Hi-C on mESC during neural differentiation
    G0G1 mESCs (FACS sorted, Oct4-GFP+)
    Enzyme
    DpnII
    Giacomo Cavalli, UM
    - fin -