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Included Properties

Data Type
  • ExperimentSetReplicate9
  • Experiment Set9
    • Dataset
  • Micro-C on HeLa cells - protocol variations9
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1299
    Organ/System
  • mesoderm9
  • reproductive system9
    • Treatments
    Set Type
  • Replicate9
    • 17 Common Properties
     Project
    4DN
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    HeLa-S3
     Tissue Source
    uterine cervix
     Publication
    Akgol Oksuz B et al. (2021) PMID:34480151
     Modifications
    No value
     Assay Details
    Enzyme: MNase
     Center
    NOFIC - Dekker
     Status
    Released
     Commendations
    No value
     Warnings
    Replicate Numbers
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESA645JZF
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESA5PN8AB
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESCXWBAEE
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, non synchronized
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNES1UAI7F5
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESC9311OT
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESRTUDA91
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, mitosis
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESM9M3FA4
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESFT1GE12
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+EGS, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    4DNESGCCOT7T
    Micro-C
    HeLa-S3
    Micro-C on HeLa cells - protocol variations
    Formaldehyde+DSG, G1 phase
    Enzyme
    MNase
    Job Dekker, UMMS
    - fin -