Included Properties
Data Type
Lab
Experiment Category
Experiment Type
Dataset
Sample Type
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Set Type
Warnings
6 Common Properties
Project
4DN
Organism
Mouse
Sample Tier
Unclassified
Center
OFHHD - Phillips-Cremins
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
double-positive, alpha-beta thymocyte
Multiplexed FISH DP T-cells mice
WT DP T-cells
Target
Ets1 mouse gene
HiChIP
NIH3T3
HiChIP-seq on NIH-3T3 cells
induced expression of TCF1
Target
Smc1a (mouse)
HiChIP
NIH3T3
HiChIP-seq on NIH-3T3 cells
uninduced control
Target
Smc1a (mouse)
in situ Hi-C
double-positive, alpha-beta thymocyte
Hi-C on DP2 cells isolated from CRE induced TCF1-KO mice
Cre+ induced mice-Knockout tcf7
Enzyme
Arima - A1, A2
in situ Hi-C
double-positive, alpha-beta thymocyte
Hi-C on DP2 cells isolated from CRE induced mice
Cre+ induced mice (control)
Enzyme
Arima - A1, A2
in situ Hi-C
scid.adh
Hi-C on Scid.adh cells
CRISPR modified- Knockout tcf7
Enzyme
Arima - A1, A2
in situ Hi-C
scid.adh
Hi-C on Scid.adh cells
WT (control)
Enzyme
Arima - A1, A2
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
TCF1 KO
Target
Nipbl mouse protein
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
empty vector control
Target
Nipbl mouse protein
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
TCF1 KO
Target
H3K27ac (mouse)
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
empty vector control
Target
H3K27ac (mouse)
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
empty vector control
Target
TCF-1 mouse protein
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
TCF1 KO
Target
Smc1a (mouse)
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
empty vector control
Target
Smc1a (mouse)
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
TCF1 KO
Target
TCF-1 mouse protein
ChIP-seq
scid.adh
ChIP-seq in scid.adh cells
empty vector control
Target
Ctcf mouse protein
ChIP-seq
NIH3T3
ChIP-seq in 3T3 cells
induced expression of TCF1
Target
TCF-1 mouse protein
ChIP-seq
NIH3T3
ChIP-seq in 3T3 cells
induced expression of TCF1
Target
Smc1a (mouse)
ChIP-seq
NIH3T3
ChIP-seq in 3T3 cells
uninduced control
Target
Smc1a (mouse)
ChIP-seq
NIH3T3
ChIP-seq in 3T3 cells
induced expression of TCF1
Target
Ctcf mouse protein
ChIP-seq
NIH3T3
ChIP-seq in 3T3 cells
uninduced control
Target
Ctcf mouse protein
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