Data Browser
Filter & browse experiments

Included Properties

Data Type
  • ExperimentSetReplicate22
    • Dataset
    Organism
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Modifications
    Treatments
    Assay Details
    Set Type
  • Replicate22
    • Produced in Publication
  • Fujimori T et al. (2023) doi:10.1101/2023.10.03.56061622
    • Warnings
    10 Common Properties
     Project
    4DN
     Lab
    Lacramioara Bintu, STANFORD
     Experiment Category
    Microscopy
     Experiment Type
    FISH
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Publication
    Fujimori T et al. (2023) doi:10.1101/2023.10.03.560616
     Center
    Bintu
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    1
    Biosample
    Dataset
    2
    Condition
    3
    Assay Details
    Lab
    4DNESYYKWEGP
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-DNMT3B with doxycyline treatment for 5 days + 22 day washout
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESBJAGS3L
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-DNMT3B, control
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNES9GRE1MF
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-HDAC4 with doxycyline treatment for 1 day
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNES6V1ADE6
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-HDAC4 with doxycyline treatment for 5 days
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESF2OVGTV
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-HDAC4, control
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNES2UUTKRG
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (EEW25AAA-mutant) with doxycyline treatment for 1 day
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESF84FBJO
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (EEW25AAA-mutant) with doxycyline treatment for 5 days
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESZNP8GRK
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (EEW25AAA-mutant), negative control
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESA6K6PSP
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (wild-type), control
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESDGTQZS8
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (wildtype) with doxycyline treatment for 1 day
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNES39PM3GJ
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (wildtype) with doxycyline treatment for 5 days
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESY7MOKC6
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (wildtype) with doxycyline treatment for 5 days + 22 days washout (mCitrine reporter OFF)
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESW6MXLZO
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (wildtype) with doxycyline treatment for 5 days + 22 days washout (mCitrine reporter ON)
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESCCHHMAL
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (Y46A-mutant) with doxycyline treatment for 1 day
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESZ2NID59
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (Y46A-mutant) with doxycyline treatment for 5 days
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESSJVX5YK
    multiplexed FISH
    293T
    Multiplexed FISH of AAVS1 locus in HEK293T
    rTetR-KRAB (Y46A-mutant), control
    Target
    Chromosomes, Custom genome assembly (pJT039-chr19 insert)
    Lacramioara Bintu, STANFORD
    4DNESHGEXAOL
    multiplexed FISH
    K562
    Multiplexed FISH of MYC locus in K562
    customscope microscope
    Target
    Chromosomes, MYC region
    Lacramioara Bintu, STANFORD
    4DNESFYAXQ29
    multiplexed FISH
    K562
    Multiplexed FISH of MYC locus in K562
    widefield microscope
    Target
    Chromosomes, MYC region
    Lacramioara Bintu, STANFORD
    4DNESPHMJKZ1
    multiplexed FISH
    mouse embryonic stem cell
    Multiplexed FISH of Nanog locus in mESC
    1-day differentiated cells
    Target
    Chromosomes, Nanog mouse region
    Lacramioara Bintu, STANFORD
    4DNESPGHZDPX
    multiplexed FISH
    mouse embryonic stem cell
    Multiplexed FISH of Nanog locus in mESC
    2-days differentiated cells
    Target
    Chromosomes, Nanog mouse region
    Lacramioara Bintu, STANFORD
    4DNES1GJALZP
    multiplexed FISH
    mouse embryonic stem cell
    Multiplexed FISH of Nanog locus in mESC
    3-days differentiated cells
    Target
    Chromosomes, Nanog mouse region
    Lacramioara Bintu, STANFORD
    4DNESLWLKPV5
    multiplexed FISH
    mouse embryonic stem cell
    Multiplexed FISH of Nanog locus in mESC
    undifferentiated, control
    Target
    Chromosomes, Nanog mouse region
    Lacramioara Bintu, STANFORD
    - fin -