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  • ExperimentSetReplicate23
    • Experiment Category
    Experiment Type
    Dataset
    Sample Type
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Modifications
    Treatments
    Assay Details
    Set Type
  • Replicate23
    • Produced in Publication
  • Liu M et al. (2024) doi:10.1101/2023.07.23.55015723
    • Warnings
    8 Common Properties
     Project
    4DN
     Lab
    Siyuan Wang, YALE
     Organism
    Mouse
     Sample Tier
    Unclassified
     Publication
    Liu M et al. (2024) doi:10.1101/2023.07.23.550157
     Center
    OFHHD - Schatz
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    1
    Biosample
    Dataset
    2
    Condition
    3
    Assay Details
    Lab
    4DNESRNRHHPX
    in situ Hi-C
    lung
    Hi-C in lung tissue
    LUAD (GFP+)
    Enzyme
    Arima - F1, A2, F3, F4
    Siyuan Wang, YALE
    4DNESL63T3CQ
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-green (GFP+) Mutant
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNES6ZB1RRK
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-red (tdTomato+) WT
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNESAH29OB7
    multiplexed FISH
    Adenoma from mouse SA3961 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    Adenoma-yellow (GFP+tdTomato+)
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNESN7RP1VC
    multiplexed FISH
    LUAD from mouse MM2030 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    LUAD (GFP+)
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNES1MPPNUZ
    multiplexed FISH
    AT2 from mouse SA5258 (fine-scale)
    Multiplexed FISH fine-scale in lung tissue
    WT AT2 cells
    Target
    Chromosomes, mouse region
    Siyuan Wang, YALE
    4DNES7OJTW3H
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    Rnf2 (dTag)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESC49H1Q2
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    Rnf2 (dTAG13-Neg) - Negative control
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESTI84OV9
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shNTC
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNES733YZ6E
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2 (vector shRnf2 I53S)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESGUTNX66
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2 (vector shRnf2 WT)
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESUAORW1V
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2-1
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESUCSFR9H
    multiplexed FISH
    type II pneumocyte
    Multiplexed FISH in lung LUAD primary cell line
    shRnf2-3
    Target
    Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
    Siyuan Wang, YALE
    4DNESMU7LCO2
    multiplexed FISH
    Adenoma from mouse SA3961 and Adenoma from mouse SA3506 and Adenoma from mouse SA3441 and Adenoma from mouse SA3962
    Multiplexed FISH in lung tissue
    Adenoma-green (GFP+) Mutant
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESNYALVVY
    multiplexed FISH
    Adenoma from mouse SA3961 and Adenoma from mouse SA3506 and Adenoma from mouse SA3441 and Adenoma from mouse SA3962
    Multiplexed FISH in lung tissue
    Adenoma-red (tdTomato+) WT
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESJEWFX8Y
    multiplexed FISH
    Adenoma from mouse SA3961 and Adenoma from mouse SA3506 and Adenoma from mouse SA3441 and Adenoma from mouse SA3962
    Multiplexed FISH in lung tissue
    Adenoma-yellow (GFP+tdTomato+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESX1I17ZA
    multiplexed FISH
    LUAD from mouse SA3440 and LUAD cells from mouse MM1433 and LUAD cells from mouse MM2030 and LUAD cells from mouse SA3501 and LUAD cells from mouse MM1690
    Multiplexed FISH in lung tissue
    LUAD (GFP+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESSN3I72P
    multiplexed FISH
    AT2 from mouse SA4450 and AT2 from mouse SA5258 and AT2 from mouse SA4799 and AT2 from mouse SA4452
    Multiplexed FISH in lung tissue
    WT AT2 cells
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNES3UJAQMU
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-green (GFP+) Mutant
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNES82VLU4S
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-red (tdTomato+) WT
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESPU4QLF3
    multiplexed FISH
    PanIN cells from mouse
    Multiplexed FISH in pancreatic tissue
    PanIN-yellow (GFP+tdTomato+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNES7V47RFL
    multiplexed FISH
    PDAC cells from mouse SA8068
    Multiplexed FISH in pancreatic tissue
    PDAC (GFP+)
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    4DNESA7GOBZR
    multiplexed FISH
    Pancreatic duct cells from mouse SA6144
    Multiplexed FISH in pancreatic tissue
    WT CK19+ duct cells
    Target
    Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
    Siyuan Wang, YALE
    - fin -