ExperimentSetReplicate

ExperimentSet4DNES41HIROS
released
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Hi-C on Foxp3-low Treg precursor cells isolated from thymus

   May 2nd, 2023 at 9:13pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg precursor - CD25+ Foxp3-low
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES41HIROS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5KBR3NQ
35.17m
62.77%
15.938%
21.292%
Experiment
4DNEXZLDXJ8P
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3-low with MboI
File
Contact List-replicate (pairs)
4DNFIIG9J4GC
20.41m
62.999%
15.864%
21.137%
Experiment
4DNEXUI3UNXL
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3-low with MboI
File
Contact List-replicate (pairs)
4DNFI3TDA242
14.77m
62.454%
16.039%
21.507%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES41HIROS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIKQCRX6M
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZLDXJ8P
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3-low with MboI
File
Alignments (bam)
4DNFIQU7CZKO
31.86m
4.977%
11.164%
10.413%
9.396%
0.125%
Experiment
4DNEXUI3UNXL
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3-low with MboI
File
Alignments (bam)
4DNFIZTQRSP2
22.58m
5.099%
11.167%
8.52%
9.814%
0.128%