ExperimentSetReplicate

ExperimentSet4DNES43CTA1F
released
View JSON

Replicates of Hi-C on newborn (P0) C57X129 mouse cardiomyocytes

   April 10th, 2019 at 5:23pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES43CTA1F
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFI7AUBP
2.58 billion
48.411%
20.921%
30.668%
Experiment
4DNEXN9UQFRA
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFILL61GHC
870.07m
48.272%
21.34%
30.388%
Experiment
4DNEXLTU6U7F
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFIF363VXE
859.97m
48.353%
20.918%
30.729%
Experiment
4DNEXFIJ4K2K
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFIIRA9MY6
847.26m
48.612%
20.495%
30.893%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES43CTA1F
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMF2HYV8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXN9UQFRA
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFI8E66EHQ
1.64 billion
5.252%
11.291%
21.188%
9.195%
0.316%
Experiment
4DNEXLTU6U7F
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFILGXQ4MI
1.62 billion
5.161%
11.33%
21.302%
9.22%
0.328%
Experiment
4DNEXFIJ4K2K
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIYR7SYN7
1.53 billion
5.239%
11.374%
18.835%
9.285%
0.331%