ExperimentSetReplicate

ExperimentSet4DNES4G1HPQC
released
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HiC on WT ZF sperm

   June 18th, 2020 at 2:33pm
Source Publication
Chromatin architecture transitions from zebrafish sperm through early embryogenesis.
Wike CL, Guo Y, et al., Genome research 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
D. rerio
Sample Type 
whole organisms
Sample 
Zebrafish Embryo
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4G1HPQC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFFBCFKN
103.37m
43.597%
13.343%
43.06%
Experiment
4DNEXXRD6JTM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Contact List-replicate (pairs)
4DNFIVY13VVV
47.25m
43.471%
13.504%
43.024%
Experiment
4DNEXKNKUZZ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Contact List-replicate (pairs)
4DNFIO9WHR8G
56.12m
43.704%
13.207%
43.09%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4G1HPQC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITHB7HKC
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXXRD6JTM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Alignments (bam)
4DNFI75K59OT
185.23m
42.784%
11.315%
3.86%
16.531%
0.634%
Experiment
4DNEXKNKUZZ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Alignments (bam)
4DNFIGC8K2SF
175.53m
26.969%
13.311%
4.564%
23.187%
0.778%