ExperimentSetReplicate

ExperimentSet4DNES4P4UOAZ
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 2 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES4P4UOAZ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFISYAWS69
569.59m
44.472%
41.245%
14.283%
Experiment
4DNEXJXLDL2R
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFISYD2KUT
611.04m
44.41%
40.56%
15.03%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4P4UOAZ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIJPZ4ASS
None