ExperimentSetReplicate

ExperimentSet4DNES5MRV8A5
released
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RNA-seq in HCT116, treated with via auxin-inducible degron system-0h

   June 28th, 2024 at 5:24pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXUG6DALM
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIHJ5H27M
40.02m
33.75m
Experiment
4DNEX98Y5JUC
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIVIBQEQF
61.71m
56.36m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXUG6DALM
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFITEMAVMR
54.95m
270
Experiment
4DNEX98Y5JUC
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIIJQ6HA8
78.37m
2