ExperimentSetReplicate

ExperimentSet4DNES5NCWM56
released
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RNA-seq on CD8- CD4- double negative T cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
double-negative alpha beta thymocyte
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXM883QVJ
Bio Rep 1, Tec Rep 1
RNA-seq on double-negative alpha beta thymocyte
File
Read Positions (bam)
4DNFII7NZQMJ
3.71m
3.43m
Experiment
4DNEX5L4N6E8
Bio Rep 2, Tec Rep 1
RNA-seq on double-negative alpha beta thymocyte
File
Read Positions (bam)
4DNFIA3QO5XX
3.46m
3.2m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXM883QVJ
Bio Rep 1, Tec Rep 1
RNA-seq on double-negative alpha beta thymocyte
File
Gene Expression (tsv)
4DNFIKVKYVFT
3.78m
4.39k
Experiment
4DNEX5L4N6E8
Bio Rep 2, Tec Rep 1
RNA-seq on double-negative alpha beta thymocyte
File
Gene Expression (tsv)
4DNFI6S998N6
3.59m
4.05k