{"lab": {"uuid": "312cb909-76a6-405d-a96c-c3292abf08a1", "@id": "/labs/alistair-boettiger-lab/", "correspondence": [{"contact_email": "YWJvZXR0aWdAc3RhbmZvcmQuZWR1", "@id": "/users/b8835c78-05e3-4173-a6c5-1ab93b4d12cc/", "display_title": "Alistair Boettiger"}], "status": "current", "title": "Alistair Boettiger, STANFORD", "@type": ["Lab", "Item"], "display_title": "Alistair Boettiger, STANFORD", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.312cb909-76a6-405d-a96c-c3292abf08a1"]}}, "award": {"center": "External", "center_title": "External", "name": "external-award", "description": "Funding source is from outside 4DN.", "project": "External", "display_title": "EXTERNAL AWARD", "status": "current", "@id": "/awards/external-award/", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "badges": [{"badge": {"display_title": "Replicate Numbers", "@id": "/badges/replicate-numbers/", "warning": "Replicate Numbers", "uuid": "24a64a84-3c33-4d76-aaf2-e5ef45eff347", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "description": "Issues with replicate numbers", "@type": ["Badge", "Item"], "status": "released", "badge_classification": "Warning", "title": "Replicate Numbers", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "messages": ["Replicate set contains only a single biological replicate"]}], "status": "released", "aliases": ["alistair-boettiger-lab:HCT116_2.5-Mb_auxin"], "accession": "4DNES67C81FH", "condition": "Chr21:34-37 Mb in HCT116 cells cohesin-depleted", "description": "Chromatin tracing of a 2.5-Mb region on chromosome 21 (Chr21:34.6Mb-37.1Mb) in HCT116 cells with RAD21-AID, treated with auxin", "date_created": "2022-09-02T10:49:21.657368+00:00", "submitted_by": {"error": "no view permissions"}, "dataset_label": 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["group.admin", "role.lab_submitter", "submits_for.312cb909-76a6-405d-a96c-c3292abf08a1"]}}, "name": "bintu_data_github", "uuid": "1f991c02-ed0c-40bf-9e48-7d9238183823", "award": {"uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "@id": "/awards/external-award/", "status": "current", "display_title": "EXTERNAL AWARD", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "content": "This dataset was initially published on GitHub https://github.com/BoettigerLab/ChromatinImaging/tree/master/Data in a lab-specified format.\nData in the 4DN portal is derived from the same experiments, but has been formatted according to the 4DN standard [FOF-CT](https://fish-omics-format.readthedocs.io/en/latest/).", "@id": "/static-sections/1f991c02-ed0c-40bf-9e48-7d9238183823/", "options": {"filetype": "md", "collapsible": false, "default_open": true}, "contributing_labs": [{"display_title": "Xiaowei Zhuang, HARVARD", "@type": 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derived from either [c8e8a284-c6d0-4b97-9670-822ae7a8296f](https://data.4dnucleome.org/microscope-configurations/c8e8a284-c6d0-4b97-9670-822ae7a8296f) or [a2b6ca4e-7de9-484f-b8c3-c868b68f929e](https://data.4dnucleome.org/microscope-configurations/a2b6ca4e-7de9-484f-b8c3-c868b68f929e) microscopes ", "filetype": "md", "content_as_html": "<div class=\"markdown-container\"><p>The experiments associated with this study are derived from either <a href=\"https://data.4dnucleome.org/microscope-configurations/c8e8a284-c6d0-4b97-9670-822ae7a8296f\" rel=\"noopener noreferrer\" target=\"_blank\">c8e8a284-c6d0-4b97-9670-822ae7a8296f</a> or <a href=\"https://data.4dnucleome.org/microscope-configurations/a2b6ca4e-7de9-484f-b8c3-c868b68f929e\" rel=\"noopener noreferrer\" target=\"_blank\">a2b6ca4e-7de9-484f-b8c3-c868b68f929e</a> microscopes </p></div>"}, {"lab": {"@type": ["Lab", "Item"], "@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", 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Tracing (FOF-CT).\n\nThis is a collection of tabular files, consisting of several tables.\nThe DNA-spot/trace core table is organized around individual DNA bright Spots that are spatially linked together in a three-dimensional (3D) polymeric Trace.\nAdditional optional tables can complement this information and vary according to the specific dataset. \n\nThe full documentation is available here: https://fish-omics-format.readthedocs.io/", "filetype": "md", "content_as_html": "<div class=\"markdown-container\"><p>Processed files in this dataset are provided in the 4DN standard FISH-Omics Format - Chromatin Tracing (FOF-CT).</p>\n<p>This is a collection of tabular files, consisting of several tables.\nThe DNA-spot/trace core table is organized around individual DNA bright Spots that are spatially linked together in a three-dimensional (3D) polymeric Trace.\nAdditional optional tables can complement this information and vary according to the specific dataset. </p>\n<p>The full 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