ExperimentSetReplicate

ExperimentSet4DNES6ZVXH6F
released
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CTCF ChIP-seq on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXJDNQ9HA
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIHFFYGAN
0.85
0.85
65.09m
Experiment
4DNEX668KF4P
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIMOU4PM2
0.88
0.88
78.68m