ExperimentSetReplicate

ExperimentSet4DNES8A86YW2
released
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Replicates of Hi-C on E12.5 C57X129 mouse cardiomyocytes

   April 10th, 2019 at 5:23pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

14 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES8A86YW2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFISA93WNG
3.32 billion
59.68%
19.061%
21.259%
Experiment
4DNEXBW9XTSG
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFIZBQZ19F
964.57m
59.796%
19.174%
21.03%
Experiment
4DNEXO88G4GC
Bio Rep 1, Tec Rep 2
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFI8J1DR8E
421.96m
59.786%
19.219%
20.995%
Experiment
4DNEXI13KJBK
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFI7QYRMPV
947.02m
59.632%
19.296%
21.072%
Experiment
4DNEXORIXRZ1
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFI9MSD7XZ
985.34m
59.567%
18.658%
21.776%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8A86YW2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIJCQOI3
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBW9XTSG
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIYLWVFP4
1.76 billion
4.879%
11.75%
19.403%
9.241%
0.095%
Experiment
4DNEXO88G4GC
Bio Rep 1, Tec Rep 2
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIRUEW3SX
697.62m
4.763%
11.774%
13.743%
9.234%
0.106%
Experiment
4DNEXI13KJBK
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIU3UGGFF
1.7 billion
5.32%
11.179%
17.69%
10.119%
0.118%
Experiment
4DNEXORIXRZ1
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIEPO44HW
1.74 billion
5.437%
11.66%
15.736%
10.561%
0.114%