ExperimentSetReplicate

ExperimentSet4DNES9AFXLKY
released
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RNA-seq in HCT116, treated with via auxin-inducible degron system-12h

   June 28th, 2024 at 5:24pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXGO8BHIJ
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFI4SJC3A8
50.57m
44.76m
Experiment
4DNEX9MG8YZQ
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIC6XH8OE
58.22m
52.94m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXGO8BHIJ
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFII8H3X84
75.07m
182
Experiment
4DNEX9MG8YZQ
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIGKBWM3Z
73.64m
0