ExperimentSetReplicate

ExperimentSet4DNES9KYIC7L
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RNA-seq on trophoblast stem cells (TSC) from mouse

   December 4th, 2023 at 10:44pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
trophoblast cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXOS4NTYW
Bio Rep 1, Tec Rep 1
RNA-seq on trophoblast cell
File
Read Positions (bam)
4DNFIRVFWXIU
48.05m
39.97m
Experiment
4DNEXUVRW9R3
Bio Rep 2, Tec Rep 1
RNA-seq on trophoblast cell
File
Read Positions (bam)
4DNFI3CF7PD9
37.88m
32.3m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXOS4NTYW
Bio Rep 1, Tec Rep 1
RNA-seq on trophoblast cell
File
Gene Expression (tsv)
4DNFIFHKRC2X
62.38m
253.81k
Experiment
4DNEXUVRW9R3
Bio Rep 2, Tec Rep 1
RNA-seq on trophoblast cell
File
Gene Expression (tsv)
4DNFIRDLK7BP
48.48m
98.94k