ExperimentSetReplicate

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ExperimentSet4DNESAIFV6CN
released
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Replicates of in situ Hi-C on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 11 days to cardiac myocytes.

   November 27th, 2019 at 7:05pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESAIFV6CN
Multiple Experiments
File
4DNFIB66DDNV
contact list-combined (pairs)
30.54 GB
-
File
4DNFICZG2DYC
contact matrix (hic)
15.08 GB
-
File
4DNFI93QV4DD
contact matrix (mcool)
10.38 GB
File
4DNFIRCHII1G
boundaries (bed)
134.04 kB
-
File
4DNFI9KQNTSV
insulation score-diamond (bw)
8.1 MB
-
File
4DNFIHCA4SI9
compartments (bw)
206.61 kB
-
Experiment
4DNEXWIWX92R
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
4DNFI4136614
alignments (bam)
248.85 GB
-
File
4DNFIEOCEZTQ
contact list-replicate (pairs)
14.29 GB
-
Experiment
4DNEXPGYTBNH
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
4DNFIAQKS7OG
alignments (bam)
308.89 GB
-
File
4DNFIPFD4RUZ
contact list-replicate (pairs)
18.42 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESAIFV6CN
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIB66DDNV
1.76 billion
34.99%
18.304%
46.705%
Experiment
4DNEXWIWX92R
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Contact List-replicate (pairs)
4DNFIEOCEZTQ
767.23m
36.953%
19.554%
43.493%
Experiment
4DNEXPGYTBNH
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Contact List-replicate (pairs)
4DNFIPFD4RUZ
988.03m
33.466%
17.334%
49.2%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESAIFV6CN
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI93QV4DD
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXWIWX92R
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Alignments (bam)
4DNFI4136614
1.35 billion
6.365%
8.168%
18.308%
10.285%
0.206%
Experiment
4DNEXPGYTBNH
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Alignments (bam)
4DNFIAQKS7OG
1.74 billion
5.389%
8.842%
19.539%
9.561%
0.232%