{"lab": {"@id": "/labs/ana-pombo-lab/", "title": "Ana Pombo, MDC", "display_title": "Ana Pombo, MDC", "status": "current", "@type": ["Lab", "Item"], "correspondence": [{"contact_email": "YW5hLnBvbWJvQG1kYy1iZXJsaW4uZGU=", "@id": "/users/bce4f2b5-9a2a-4db2-9dd6-7d61f19025c1/", "display_title": "Ana Pombo"}], "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "award": {"display_title": "SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH", "uuid": "4871e338-b07d-4665-a00a-357648e5bad6", "@id": "/awards/1U54DK107977-01/", "@type": ["Award", "Item"], "status": "current", "name": "1U54DK107977-01", "project": "4DN", "description": "NOFIC: The complete sequencing of the human genome has provided an unprecedented opportunity for the study of the structure and function of the human genome. While our genome has historically been viewed as a linear sequence of bases, it has progressively become clear that this is an inadequate way to represent our genetic information. Notably, research over the last 30 years has begun to shed light on the fact that the higher-order, 3-dimensional organization of our genome plays a critical role in the interpretation of the genetic information encoded in our genome. The structure of our genome in the nucleus has been clearly demonstrated to play influential roles in diverse nuclear processes including DNA replication and gene expression. Despite this, our understanding of the structure of our genome within the nucleus remains incomplete. The reasons for this include limitations in the resolution and throughput of existing tools in chromatin topology mapping, a scarcity of the analytical tools for studying genome structure datasets, and the difficulty to relate the nuclear structure to function. Due to recent advancements in molecular methods based on high-throughput DNA sequencing, single cell analytical approaches, and high-resolution microscopy, the time for breaking through these previous limitations has come. We will establish a highly collaborative, innovative team in order to develop the tools necessary to transform our understanding of chromatin architecture and function in mammalian cells. We will begin by developing datasets that establish gold standards for the study of nuclear structure and function using genetic, biochemical and imaging approaches. We will optimize current existing technologies for mapping genome wide chromatin interactions, while also developing novel, complementary approaches for studying chromatin structure. We will also develop innovative analytical methods to interpret the chromatin structural data, unraveling principles of structural- and temporal- chromatin organization. Our highly collaborative team will draw on the diverse experiences of its members to provide a synergistic environment to push the limits of our understanding of nuclear structure. We expect that the tools and datasets generated through the proposed research will dramatically advance our understanding of the chromatin structure and function in human cells.", "center_title": "NOFIC - Ren", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "pi": {"error": "no view permissions"}}, "badges": [{"badge": {"@id": "/badges/replicate-numbers/", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "display_title": "Replicate Numbers", "description": "Issues with replicate numbers", "@type": ["Badge", "Item"], "warning": "Replicate Numbers", "badge_classification": "Warning", "title": "Replicate Numbers", "uuid": "24a64a84-3c33-4d76-aaf2-e5ef45eff347", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "messages": ["Replicate set contains only a single biological replicate"]}], "status": "released", "aliases": ["ana-pombo-lab:gam_46c_soxGFP"], "accession": "4DNESALAVZ67", "documents": [{"@type": ["Document", "Item"], "status": "released", "@id": "/documents/b31a6d4d-7025-4825-81dc-fbe032c0b0d0/", "uuid": "b31a6d4d-7025-4825-81dc-fbe032c0b0d0", "display_title": "200821_46CmESC_3NP_table.xlsx", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "description": "Replicate of GAM on 46C with Sox1-GFP mouse ES cells.", "date_created": "2019-12-13T03:02:44.560401+00:00", "submitted_by": {"error": "no view permissions"}, "dataset_label": "GAM on 46C mouse ES cells", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2023-06-21T16:23:48.408999+00:00"}, "public_release": "2020-08-11", "replicate_exps": [{"bio_rep_no": 1, "tec_rep_no": 1, "replicate_exp": {"status": "released", "uuid": "6d4f064d-76ea-4492-bfa7-62a9ce633116", "display_title": "GAM on 46C with Sox1-GFP - 4DNEXTQ35QAS", "accession": "4DNEXTQ35QAS", "@id": "/experiments-seq/4DNEXTQ35QAS/", "@type": ["ExperimentSeq", "Experiment", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "schema_version": "2", "static_headers": [{"lab": {"uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "display_title": "Ana Pombo, MDC", "@type": ["Lab", "Item"], "status": "current", "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "body": "**NOTE** The excel workbook [**downloadable from this page**](https://data.4dnucleome.org/documents/b31a6d4d-7025-4825-81dc-fbe032c0b0d0/) contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset.\n\nThe workbook consists of 2 sheets. The first provides descriptions and terms used in the second and highlights those that may be used to evaluate quality of the libraries.\nThe second sheet provides information on each individual GAM library linked to this dataset.\nEach library corresponds to a single FastQ file that can be identified using the provided Sample_ID in the first column.", "name": "46CmESC-GAM-QC-info-notice", "award": {"uuid": "71171a4e-dca1-44cb-8375-fafd896c6923", "status": "current", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE II", "@type": ["Award", "Item"], "@id": "/awards/2U01CA200059-06/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "title": "Batch Quality Information for GAM libraries (NP fastq files) in this Dataset", "status": "released", "aliases": ["4dn-dcic-lab:46CmESC_GAM_QC_info_notice"], "options": {"filetype": "md", "collapsible": false, "default_open": true}, "date_created": "2021-05-19T14:49:43.960656+00:00", "section_type": "Item Page Header", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-19T14:55:23.793437+00:00"}, "schema_version": "2", "@id": "/static-sections/8f3e52a2-0a10-4fd5-b2f6-db73bf2d5309/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "8f3e52a2-0a10-4fd5-b2f6-db73bf2d5309", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.owner", "userid.986b362f-4eb6-4a9c-8173-3ab267227777"]}, "display_title": "Batch Quality Information for GAM libraries (NP fastq files) in this Dataset", "external_references": [], "content": "**NOTE** The excel workbook [**downloadable from this page**](https://data.4dnucleome.org/documents/b31a6d4d-7025-4825-81dc-fbe032c0b0d0/) contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset.\n\nThe workbook consists of 2 sheets. The first provides descriptions and terms used in the second and highlights those that may be used to evaluate quality of the libraries.\nThe second sheet provides information on each individual GAM library linked to this dataset.\nEach library corresponds to a single FastQ file that can be identified using the provided Sample_ID in the first column.", "filetype": "md", "content_as_html": "

NOTE The excel workbook downloadable from this page contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset.

\n

The workbook consists of 2 sheets. The first provides descriptions and terms used in the second and highlights those that may be used to evaluate quality of the libraries.\nThe second sheet provides information on each individual GAM library linked to this dataset.\nEach library corresponds to a single FastQ file that can be identified using the provided Sample_ID in the first column.

"}], "project_release": "2020-08-11", "experiments_in_set": [{"@type": ["ExperimentSeq", "Experiment", "Item"], "accession": "4DNEXTQ35QAS", "status": "released", "files": [{"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZF5UGKV/@@download/4DNFIZF5UGKV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/55e9f6b8-928f-4f71-bac2-8924249acd0c/4DNFIZF5UGKV.fastq.gz", "@id": "/files-fastq/4DNFIZF5UGKV/", "display_title": "4DNFIZF5UGKV.fastq.gz", "md5sum": "9336008a957e869afa3c84b7015bb705", "file_classification": "raw file", "upload_key": "55e9f6b8-928f-4f71-bac2-8924249acd0c/4DNFIZF5UGKV.fastq.gz", "accession": "4DNFIZF5UGKV", "uuid": "55e9f6b8-928f-4f71-bac2-8924249acd0c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 60726050, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2f19795f-c7bc-4ded-9c9e-5ce5c506ee64", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1315615, "display_title": "QualityMetricFastqc from 2019-12-16", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZF5UGKV/fastqc_report.html", "@id": "/quality-metrics-fastqc/2f19795f-c7bc-4ded-9c9e-5ce5c506ee64/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIAZ4S44A/@@download/4DNFIAZ4S44A.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e5a6e883-2860-42c1-989f-cbe37db269fe/4DNFIAZ4S44A.fastq.gz", "@id": "/files-fastq/4DNFIAZ4S44A/", "display_title": "4DNFIAZ4S44A.fastq.gz", "md5sum": "ffc96c992d507542777ef1d7d0aacef9", "file_classification": "raw file", "upload_key": "e5a6e883-2860-42c1-989f-cbe37db269fe/4DNFIAZ4S44A.fastq.gz", "accession": "4DNFIAZ4S44A", "uuid": "e5a6e883-2860-42c1-989f-cbe37db269fe", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 80975096, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b8673b54-25b1-4a09-a487-0faba788732e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1791649, "display_title": "QualityMetricFastqc from 2019-12-16", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAZ4S44A/fastqc_report.html", "@id": "/quality-metrics-fastqc/b8673b54-25b1-4a09-a487-0faba788732e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIE75DWQC/@@download/4DNFIE75DWQC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a93dd7e9-ba31-44b5-82f6-29bef15009a7/4DNFIE75DWQC.fastq.gz", "@id": "/files-fastq/4DNFIE75DWQC/", "display_title": "4DNFIE75DWQC.fastq.gz", "md5sum": "a692bfc6b895dff6088f5cba0806e569", "file_classification": "raw file", "upload_key": "a93dd7e9-ba31-44b5-82f6-29bef15009a7/4DNFIE75DWQC.fastq.gz", "accession": "4DNFIE75DWQC", "uuid": "a93dd7e9-ba31-44b5-82f6-29bef15009a7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 65400299, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ee8429da-4f46-4693-bc79-600fe797b9a7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1442082, "display_title": "QualityMetricFastqc from 2019-12-16", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE75DWQC/fastqc_report.html", "@id": "/quality-metrics-fastqc/ee8429da-4f46-4693-bc79-600fe797b9a7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIV3VGG6L/@@download/4DNFIV3VGG6L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e3bd735c-5090-441a-ad18-4eacf19fa842/4DNFIV3VGG6L.fastq.gz", "@id": "/files-fastq/4DNFIV3VGG6L/", "display_title": "4DNFIV3VGG6L.fastq.gz", "md5sum": "ea8928cbda5c9c374771386c4ea5d9d7", "file_classification": "raw file", "upload_key": "e3bd735c-5090-441a-ad18-4eacf19fa842/4DNFIV3VGG6L.fastq.gz", "accession": "4DNFIV3VGG6L", "uuid": "e3bd735c-5090-441a-ad18-4eacf19fa842", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 67760690, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7d738673-e6d8-4c99-a4d2-5de155136fe0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1496116, "display_title": "QualityMetricFastqc from 2019-12-16", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIV3VGG6L/fastqc_report.html", "@id": "/quality-metrics-fastqc/7d738673-e6d8-4c99-a4d2-5de155136fe0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI8VEA38M/@@download/4DNFI8VEA38M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/699d7706-1ff2-48d0-997c-11bef39f41a7/4DNFI8VEA38M.fastq.gz", "@id": "/files-fastq/4DNFI8VEA38M/", "display_title": "4DNFI8VEA38M.fastq.gz", "md5sum": "6f790714b25289cad4353cdba5fb6600", "file_classification": "raw file", "upload_key": "699d7706-1ff2-48d0-997c-11bef39f41a7/4DNFI8VEA38M.fastq.gz", "accession": "4DNFI8VEA38M", "uuid": "699d7706-1ff2-48d0-997c-11bef39f41a7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 81601776, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8682f9b0-971b-49d7-9869-f71e03e2cdf4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1741144, "display_title": "QualityMetricFastqc from 2019-12-16", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8VEA38M/fastqc_report.html", "@id": "/quality-metrics-fastqc/8682f9b0-971b-49d7-9869-f71e03e2cdf4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIB54N73/@@download/4DNFIIB54N73.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/00b6d295-fcdd-4659-9467-18629fe2ee05/4DNFIIB54N73.fastq.gz", "@id": "/files-fastq/4DNFIIB54N73/", "display_title": "4DNFIIB54N73.fastq.gz", "md5sum": "d1cfaa113170e72e59c9410e09c62bdb", "file_classification": "raw file", "upload_key": "00b6d295-fcdd-4659-9467-18629fe2ee05/4DNFIIB54N73.fastq.gz", "accession": "4DNFIIB54N73", "uuid": "00b6d295-fcdd-4659-9467-18629fe2ee05", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 95813723, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ae3401f1-45e7-4a53-89ae-7697145e4160", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2111217, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIB54N73/fastqc_report.html", "@id": "/quality-metrics-fastqc/ae3401f1-45e7-4a53-89ae-7697145e4160/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIQZYTAM/@@download/4DNFIIQZYTAM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e3d57c3b-05cb-45b2-b91e-d2da7fc48a04/4DNFIIQZYTAM.fastq.gz", "@id": "/files-fastq/4DNFIIQZYTAM/", "display_title": "4DNFIIQZYTAM.fastq.gz", "md5sum": "3f86491a7e1e8eb29116a77f97936f8b", "file_classification": "raw file", "upload_key": "e3d57c3b-05cb-45b2-b91e-d2da7fc48a04/4DNFIIQZYTAM.fastq.gz", "accession": "4DNFIIQZYTAM", "uuid": "e3d57c3b-05cb-45b2-b91e-d2da7fc48a04", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 87134926, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "69b6a140-1e06-47ec-ba9e-75860b7bb5b7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1938199, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIQZYTAM/fastqc_report.html", "@id": "/quality-metrics-fastqc/69b6a140-1e06-47ec-ba9e-75860b7bb5b7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVYHNJRW/@@download/4DNFIVYHNJRW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/21702665-94f1-4773-a0ae-73c554219bea/4DNFIVYHNJRW.fastq.gz", "@id": "/files-fastq/4DNFIVYHNJRW/", "display_title": "4DNFIVYHNJRW.fastq.gz", "md5sum": "9b9dbd5df1c3bf30d5b046546ba82cdb", "file_classification": "raw file", "upload_key": "21702665-94f1-4773-a0ae-73c554219bea/4DNFIVYHNJRW.fastq.gz", "accession": "4DNFIVYHNJRW", "uuid": "21702665-94f1-4773-a0ae-73c554219bea", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 132386638, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7b653954-37ba-40a6-900e-4f677050bdec", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2911252, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVYHNJRW/fastqc_report.html", "@id": "/quality-metrics-fastqc/7b653954-37ba-40a6-900e-4f677050bdec/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXELJ2Y3/@@download/4DNFIXELJ2Y3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/23d35dec-9670-496b-8dca-c1afaf236eda/4DNFIXELJ2Y3.fastq.gz", "@id": "/files-fastq/4DNFIXELJ2Y3/", "display_title": "4DNFIXELJ2Y3.fastq.gz", "md5sum": "cddb5aee5a1dbc6cea20b24c1ce01ff3", "file_classification": "raw file", "upload_key": "23d35dec-9670-496b-8dca-c1afaf236eda/4DNFIXELJ2Y3.fastq.gz", "accession": "4DNFIXELJ2Y3", "uuid": "23d35dec-9670-496b-8dca-c1afaf236eda", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 73557912, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "179098d9-3453-45c3-8cfe-e3040fb3a2f4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1613974, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXELJ2Y3/fastqc_report.html", "@id": "/quality-metrics-fastqc/179098d9-3453-45c3-8cfe-e3040fb3a2f4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILTHFUNQ/@@download/4DNFILTHFUNQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3ab2dc74-0c1c-4908-be89-b58055d81cf9/4DNFILTHFUNQ.fastq.gz", "@id": "/files-fastq/4DNFILTHFUNQ/", "display_title": "4DNFILTHFUNQ.fastq.gz", "md5sum": "569653c8ef60b19ef9606f06d49f4450", "file_classification": "raw file", "upload_key": "3ab2dc74-0c1c-4908-be89-b58055d81cf9/4DNFILTHFUNQ.fastq.gz", "accession": "4DNFILTHFUNQ", "uuid": "3ab2dc74-0c1c-4908-be89-b58055d81cf9", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 120666920, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bc0d778f-8812-40c6-aa7d-7dc1e0203908", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2686018, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILTHFUNQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/bc0d778f-8812-40c6-aa7d-7dc1e0203908/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITCH7Z27/@@download/4DNFITCH7Z27.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b84a7bfa-9cf0-46b6-879f-325701137619/4DNFITCH7Z27.fastq.gz", "@id": "/files-fastq/4DNFITCH7Z27/", "display_title": "4DNFITCH7Z27.fastq.gz", "md5sum": "a4d1e64ac179eb715221df956aa85cd0", "file_classification": "raw file", "upload_key": "b84a7bfa-9cf0-46b6-879f-325701137619/4DNFITCH7Z27.fastq.gz", "accession": "4DNFITCH7Z27", "uuid": "b84a7bfa-9cf0-46b6-879f-325701137619", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 122568182, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1be7dc84-3a71-4c7a-95f1-e8ffa824494d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2739704, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITCH7Z27/fastqc_report.html", "@id": "/quality-metrics-fastqc/1be7dc84-3a71-4c7a-95f1-e8ffa824494d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINBYFLAL/@@download/4DNFINBYFLAL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/51f79431-13e1-4839-bd58-5c3fe716c7ba/4DNFINBYFLAL.fastq.gz", "@id": "/files-fastq/4DNFINBYFLAL/", "display_title": "4DNFINBYFLAL.fastq.gz", "md5sum": "d64e61542ed730f5ce286a752afb1495", "file_classification": "raw file", "upload_key": "51f79431-13e1-4839-bd58-5c3fe716c7ba/4DNFINBYFLAL.fastq.gz", "accession": "4DNFINBYFLAL", "uuid": "51f79431-13e1-4839-bd58-5c3fe716c7ba", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 109898377, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "602082ac-1ed5-469b-af53-7b06d12b5537", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2435252, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINBYFLAL/fastqc_report.html", "@id": "/quality-metrics-fastqc/602082ac-1ed5-469b-af53-7b06d12b5537/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIURVBH8W/@@download/4DNFIURVBH8W.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/eea535ca-fbf9-46bb-93a2-be81b87f079e/4DNFIURVBH8W.fastq.gz", "@id": "/files-fastq/4DNFIURVBH8W/", "display_title": "4DNFIURVBH8W.fastq.gz", "md5sum": "50d465b18faab3e865cc69ed7b0e293d", "file_classification": "raw file", "upload_key": "eea535ca-fbf9-46bb-93a2-be81b87f079e/4DNFIURVBH8W.fastq.gz", "accession": "4DNFIURVBH8W", "uuid": "eea535ca-fbf9-46bb-93a2-be81b87f079e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 109002281, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fd890e8d-8826-4381-be05-5ece175fc8ab", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2398362, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIURVBH8W/fastqc_report.html", "@id": "/quality-metrics-fastqc/fd890e8d-8826-4381-be05-5ece175fc8ab/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISMHYOAL/@@download/4DNFISMHYOAL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/41c8cba0-d216-4021-b3ad-8f069da0a178/4DNFISMHYOAL.fastq.gz", "@id": "/files-fastq/4DNFISMHYOAL/", "display_title": "4DNFISMHYOAL.fastq.gz", "md5sum": "599d17b5d152fdeb85bdd521efb48c12", "file_classification": "raw file", "upload_key": "41c8cba0-d216-4021-b3ad-8f069da0a178/4DNFISMHYOAL.fastq.gz", "accession": "4DNFISMHYOAL", "uuid": "41c8cba0-d216-4021-b3ad-8f069da0a178", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 113832573, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ba932e52-067d-4d76-9fc5-398ef2f279b4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2505942, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISMHYOAL/fastqc_report.html", "@id": "/quality-metrics-fastqc/ba932e52-067d-4d76-9fc5-398ef2f279b4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGIJH4EG/@@download/4DNFIGIJH4EG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1ead98df-f2ae-4629-bce6-04a4a56f9b99/4DNFIGIJH4EG.fastq.gz", "@id": "/files-fastq/4DNFIGIJH4EG/", "display_title": "4DNFIGIJH4EG.fastq.gz", "md5sum": "7901bd0399f94e3a2f8a3a033aca4717", "file_classification": "raw file", "upload_key": "1ead98df-f2ae-4629-bce6-04a4a56f9b99/4DNFIGIJH4EG.fastq.gz", "accession": "4DNFIGIJH4EG", "uuid": "1ead98df-f2ae-4629-bce6-04a4a56f9b99", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 102782438, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "35100092-52b7-4b2d-9f31-1a73568476b3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2250765, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGIJH4EG/fastqc_report.html", "@id": "/quality-metrics-fastqc/35100092-52b7-4b2d-9f31-1a73568476b3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDNIYW3X/@@download/4DNFIDNIYW3X.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bcf646ef-1879-482a-84e2-de6d888b9324/4DNFIDNIYW3X.fastq.gz", "@id": "/files-fastq/4DNFIDNIYW3X/", "display_title": "4DNFIDNIYW3X.fastq.gz", "md5sum": "6bba8a0a996680bcf42a4cbf7907fa74", "file_classification": "raw file", "upload_key": "bcf646ef-1879-482a-84e2-de6d888b9324/4DNFIDNIYW3X.fastq.gz", "accession": "4DNFIDNIYW3X", "uuid": "bcf646ef-1879-482a-84e2-de6d888b9324", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 103310698, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "148854b6-c251-4954-8391-47cf28086640", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2275240, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDNIYW3X/fastqc_report.html", "@id": "/quality-metrics-fastqc/148854b6-c251-4954-8391-47cf28086640/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILCJBA9A/@@download/4DNFILCJBA9A.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/69338852-ab9f-4b0e-bbf1-54e268846171/4DNFILCJBA9A.fastq.gz", "@id": "/files-fastq/4DNFILCJBA9A/", "display_title": "4DNFILCJBA9A.fastq.gz", "md5sum": "5ff8c93fd35f5b5216e895c65ea0f63e", "file_classification": "raw file", "upload_key": "69338852-ab9f-4b0e-bbf1-54e268846171/4DNFILCJBA9A.fastq.gz", "accession": "4DNFILCJBA9A", "uuid": "69338852-ab9f-4b0e-bbf1-54e268846171", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 93260894, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "da5b6582-ba1f-4105-a263-c457be93cf01", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2050136, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILCJBA9A/fastqc_report.html", "@id": "/quality-metrics-fastqc/da5b6582-ba1f-4105-a263-c457be93cf01/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1KL1TMH/@@download/4DNFI1KL1TMH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2f7b94bd-b882-4293-a842-e2d4c29ac08f/4DNFI1KL1TMH.fastq.gz", "@id": "/files-fastq/4DNFI1KL1TMH/", "display_title": "4DNFI1KL1TMH.fastq.gz", "md5sum": "76fbcac0c4c84a9e88c93fc73380590a", "file_classification": "raw file", "upload_key": "2f7b94bd-b882-4293-a842-e2d4c29ac08f/4DNFI1KL1TMH.fastq.gz", "accession": "4DNFI1KL1TMH", "uuid": "2f7b94bd-b882-4293-a842-e2d4c29ac08f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 164030128, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b75a0fa8-9419-495d-89f1-bac3af060913", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3631790, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1KL1TMH/fastqc_report.html", "@id": "/quality-metrics-fastqc/b75a0fa8-9419-495d-89f1-bac3af060913/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHQUW5RF/@@download/4DNFIHQUW5RF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4a161c61-d98c-46f1-8a70-dba7c6ed4ea0/4DNFIHQUW5RF.fastq.gz", "@id": "/files-fastq/4DNFIHQUW5RF/", "display_title": "4DNFIHQUW5RF.fastq.gz", "md5sum": "5b69705eddf1d569e075bb2afa6a8e37", "file_classification": "raw file", "upload_key": "4a161c61-d98c-46f1-8a70-dba7c6ed4ea0/4DNFIHQUW5RF.fastq.gz", "accession": "4DNFIHQUW5RF", "uuid": "4a161c61-d98c-46f1-8a70-dba7c6ed4ea0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 125747330, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c607fd11-bfac-4cba-9b68-d65d4d3e0998", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2791036, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHQUW5RF/fastqc_report.html", "@id": "/quality-metrics-fastqc/c607fd11-bfac-4cba-9b68-d65d4d3e0998/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITP6XDVX/@@download/4DNFITP6XDVX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/31b473b9-8892-44b0-a698-712d99c3c0b1/4DNFITP6XDVX.fastq.gz", "@id": "/files-fastq/4DNFITP6XDVX/", "display_title": "4DNFITP6XDVX.fastq.gz", "md5sum": "09aaeb229fb36a27d7ea606ff56fa246", "file_classification": "raw file", "upload_key": "31b473b9-8892-44b0-a698-712d99c3c0b1/4DNFITP6XDVX.fastq.gz", "accession": "4DNFITP6XDVX", "uuid": "31b473b9-8892-44b0-a698-712d99c3c0b1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 129230720, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f0cf8a4e-c7be-4a5d-9ace-82b24fda9a19", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2877616, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITP6XDVX/fastqc_report.html", "@id": "/quality-metrics-fastqc/f0cf8a4e-c7be-4a5d-9ace-82b24fda9a19/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIONMH259/@@download/4DNFIONMH259.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bc277f8c-c52a-468b-a900-1d7fd4921f69/4DNFIONMH259.fastq.gz", "@id": "/files-fastq/4DNFIONMH259/", "display_title": "4DNFIONMH259.fastq.gz", "md5sum": "ef461483695940748f68a48eb8343af2", "file_classification": "raw file", "upload_key": "bc277f8c-c52a-468b-a900-1d7fd4921f69/4DNFIONMH259.fastq.gz", "accession": "4DNFIONMH259", "uuid": "bc277f8c-c52a-468b-a900-1d7fd4921f69", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 137145549, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e494498c-a0d3-47bc-806c-27799048e787", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3047500, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIONMH259/fastqc_report.html", "@id": "/quality-metrics-fastqc/e494498c-a0d3-47bc-806c-27799048e787/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHLPYP35/@@download/4DNFIHLPYP35.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b54f84b4-a84c-4ba1-9509-056b1f8702f0/4DNFIHLPYP35.fastq.gz", "@id": "/files-fastq/4DNFIHLPYP35/", "display_title": "4DNFIHLPYP35.fastq.gz", "md5sum": "ad394582fd56ceb1ef1084a75d528742", "file_classification": "raw file", "upload_key": "b54f84b4-a84c-4ba1-9509-056b1f8702f0/4DNFIHLPYP35.fastq.gz", "accession": "4DNFIHLPYP35", "uuid": "b54f84b4-a84c-4ba1-9509-056b1f8702f0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 83647042, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "51d66997-19d7-4a4a-ab9e-af7b8b32f06a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1852685, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHLPYP35/fastqc_report.html", "@id": "/quality-metrics-fastqc/51d66997-19d7-4a4a-ab9e-af7b8b32f06a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7YN1GEC/@@download/4DNFI7YN1GEC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c8c75e2e-c3a0-4a03-9135-895fb0896190/4DNFI7YN1GEC.fastq.gz", "@id": "/files-fastq/4DNFI7YN1GEC/", "display_title": "4DNFI7YN1GEC.fastq.gz", "md5sum": "d80918f5920fd5409c5b8972a9195e5b", "file_classification": "raw file", "upload_key": "c8c75e2e-c3a0-4a03-9135-895fb0896190/4DNFI7YN1GEC.fastq.gz", "accession": "4DNFI7YN1GEC", "uuid": "c8c75e2e-c3a0-4a03-9135-895fb0896190", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 122620063, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b97fc670-309f-4cf7-a596-6afaa5343045", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2702230, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7YN1GEC/fastqc_report.html", "@id": "/quality-metrics-fastqc/b97fc670-309f-4cf7-a596-6afaa5343045/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKT4F6OJ/@@download/4DNFIKT4F6OJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ec6a47cf-9c5c-4f1b-8e19-25a1b16c65d2/4DNFIKT4F6OJ.fastq.gz", "@id": "/files-fastq/4DNFIKT4F6OJ/", "display_title": "4DNFIKT4F6OJ.fastq.gz", "md5sum": "26b54a71076424b275b7681184c31a64", "file_classification": "raw file", "upload_key": "ec6a47cf-9c5c-4f1b-8e19-25a1b16c65d2/4DNFIKT4F6OJ.fastq.gz", "accession": "4DNFIKT4F6OJ", "uuid": "ec6a47cf-9c5c-4f1b-8e19-25a1b16c65d2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 109398841, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6599f428-625a-4a21-b1e4-35ee32ef787b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2410774, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKT4F6OJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/6599f428-625a-4a21-b1e4-35ee32ef787b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWN94CYX/@@download/4DNFIWN94CYX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/571e4154-3f3d-4c86-9591-9e598c2cb924/4DNFIWN94CYX.fastq.gz", "@id": "/files-fastq/4DNFIWN94CYX/", "display_title": "4DNFIWN94CYX.fastq.gz", "md5sum": "fcf89d80a1635dd154a76bbb3ecb2458", "file_classification": "raw file", "upload_key": "571e4154-3f3d-4c86-9591-9e598c2cb924/4DNFIWN94CYX.fastq.gz", "accession": "4DNFIWN94CYX", "uuid": "571e4154-3f3d-4c86-9591-9e598c2cb924", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 117773685, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c6f267f5-e89f-4d6d-ac07-07124d06b9bd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2590929, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWN94CYX/fastqc_report.html", "@id": "/quality-metrics-fastqc/c6f267f5-e89f-4d6d-ac07-07124d06b9bd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIU1OCFU9/@@download/4DNFIU1OCFU9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c6523d70-5a07-4a03-a3e4-af7d8a1db932/4DNFIU1OCFU9.fastq.gz", "@id": "/files-fastq/4DNFIU1OCFU9/", "display_title": "4DNFIU1OCFU9.fastq.gz", "md5sum": "b5486d5ba058f983d7c527390ef71191", "file_classification": "raw file", "upload_key": "c6523d70-5a07-4a03-a3e4-af7d8a1db932/4DNFIU1OCFU9.fastq.gz", "accession": "4DNFIU1OCFU9", "uuid": "c6523d70-5a07-4a03-a3e4-af7d8a1db932", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 141551819, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a0db7f84-392c-43f4-b8cc-a4a9afc3bd49", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3143001, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIU1OCFU9/fastqc_report.html", "@id": "/quality-metrics-fastqc/a0db7f84-392c-43f4-b8cc-a4a9afc3bd49/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7G9Q2ZN/@@download/4DNFI7G9Q2ZN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/15df46e1-7dea-4e47-b804-2ec90644ab81/4DNFI7G9Q2ZN.fastq.gz", "@id": "/files-fastq/4DNFI7G9Q2ZN/", "display_title": "4DNFI7G9Q2ZN.fastq.gz", "md5sum": "0c4b5a4b024c10a5f08aa35360edf133", "file_classification": "raw file", "upload_key": "15df46e1-7dea-4e47-b804-2ec90644ab81/4DNFI7G9Q2ZN.fastq.gz", "accession": "4DNFI7G9Q2ZN", "uuid": "15df46e1-7dea-4e47-b804-2ec90644ab81", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 102321520, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7bce7fda-009d-4ee6-83ef-5786b2cdca96", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2223441, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7G9Q2ZN/fastqc_report.html", "@id": "/quality-metrics-fastqc/7bce7fda-009d-4ee6-83ef-5786b2cdca96/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI4A7OG9O/@@download/4DNFI4A7OG9O.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c4f68c52-291a-45aa-a46f-3f3f449ab6e1/4DNFI4A7OG9O.fastq.gz", "@id": "/files-fastq/4DNFI4A7OG9O/", "display_title": "4DNFI4A7OG9O.fastq.gz", "md5sum": "c7a8363002c54a58592cefc083aa7815", "file_classification": "raw file", "upload_key": "c4f68c52-291a-45aa-a46f-3f3f449ab6e1/4DNFI4A7OG9O.fastq.gz", "accession": "4DNFI4A7OG9O", "uuid": "c4f68c52-291a-45aa-a46f-3f3f449ab6e1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 83995959, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0ba29886-3a90-401d-99f3-251794e30f85", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1808957, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4A7OG9O/fastqc_report.html", "@id": "/quality-metrics-fastqc/0ba29886-3a90-401d-99f3-251794e30f85/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRYMEXQN/@@download/4DNFIRYMEXQN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4acff97b-440b-4f79-8a73-23f7957ad1d5/4DNFIRYMEXQN.fastq.gz", "@id": "/files-fastq/4DNFIRYMEXQN/", "display_title": "4DNFIRYMEXQN.fastq.gz", "md5sum": "5a0b2163679da3571c5f7f81412f8eac", "file_classification": "raw file", "upload_key": "4acff97b-440b-4f79-8a73-23f7957ad1d5/4DNFIRYMEXQN.fastq.gz", "accession": "4DNFIRYMEXQN", "uuid": "4acff97b-440b-4f79-8a73-23f7957ad1d5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 133143277, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "60560ba2-d82e-4db7-ac97-1520a634232b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2904674, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRYMEXQN/fastqc_report.html", "@id": "/quality-metrics-fastqc/60560ba2-d82e-4db7-ac97-1520a634232b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMJSAYEX/@@download/4DNFIMJSAYEX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/35fda2ec-9f29-416b-9bf1-6cb3d4a05128/4DNFIMJSAYEX.fastq.gz", "@id": "/files-fastq/4DNFIMJSAYEX/", "display_title": "4DNFIMJSAYEX.fastq.gz", "md5sum": "4c917f7793701f296e9f0bf784b34fca", "file_classification": "raw file", "upload_key": "35fda2ec-9f29-416b-9bf1-6cb3d4a05128/4DNFIMJSAYEX.fastq.gz", "accession": "4DNFIMJSAYEX", "uuid": "35fda2ec-9f29-416b-9bf1-6cb3d4a05128", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 72010701, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3120e40a-bbdb-4c6c-997c-f002ffe3e405", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1548590, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMJSAYEX/fastqc_report.html", "@id": "/quality-metrics-fastqc/3120e40a-bbdb-4c6c-997c-f002ffe3e405/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRJLXGKQ/@@download/4DNFIRJLXGKQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ea9b9f85-e41e-41d8-b473-06d1de7a8200/4DNFIRJLXGKQ.fastq.gz", "@id": "/files-fastq/4DNFIRJLXGKQ/", "display_title": "4DNFIRJLXGKQ.fastq.gz", "md5sum": "f7aac24ffbb38cf8d4326ea9fe53cde4", "file_classification": "raw file", "upload_key": "ea9b9f85-e41e-41d8-b473-06d1de7a8200/4DNFIRJLXGKQ.fastq.gz", "accession": "4DNFIRJLXGKQ", "uuid": "ea9b9f85-e41e-41d8-b473-06d1de7a8200", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 119569147, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "510a8f21-dbe9-436c-a92f-f815bbf18842", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2588386, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRJLXGKQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/510a8f21-dbe9-436c-a92f-f815bbf18842/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI4WZO16I/@@download/4DNFI4WZO16I.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/343e4ff2-f1f6-45bc-9ebb-5ea78279fb62/4DNFI4WZO16I.fastq.gz", "@id": "/files-fastq/4DNFI4WZO16I/", "display_title": "4DNFI4WZO16I.fastq.gz", "md5sum": "1e787a6b889f91cffcf321afec941f5f", "file_classification": "raw file", "upload_key": "343e4ff2-f1f6-45bc-9ebb-5ea78279fb62/4DNFI4WZO16I.fastq.gz", "accession": "4DNFI4WZO16I", "uuid": "343e4ff2-f1f6-45bc-9ebb-5ea78279fb62", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 81758633, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e68f3e4d-91e2-405b-8edc-4790d57632bc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1750377, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4WZO16I/fastqc_report.html", "@id": "/quality-metrics-fastqc/e68f3e4d-91e2-405b-8edc-4790d57632bc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIP9JTZSN/@@download/4DNFIP9JTZSN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9ebf168c-8382-4f9f-8ab8-140fef13c1f1/4DNFIP9JTZSN.fastq.gz", "@id": "/files-fastq/4DNFIP9JTZSN/", "display_title": "4DNFIP9JTZSN.fastq.gz", "md5sum": "705126ee4c8e03598e6e68c69c52f10a", "file_classification": "raw file", "upload_key": "9ebf168c-8382-4f9f-8ab8-140fef13c1f1/4DNFIP9JTZSN.fastq.gz", "accession": "4DNFIP9JTZSN", "uuid": "9ebf168c-8382-4f9f-8ab8-140fef13c1f1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 95523954, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e57f0eb7-4b75-40b5-87f8-d8ae80e6fd43", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2061890, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIP9JTZSN/fastqc_report.html", "@id": "/quality-metrics-fastqc/e57f0eb7-4b75-40b5-87f8-d8ae80e6fd43/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2MTBBLH/@@download/4DNFI2MTBBLH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/98dd2865-6b41-4517-af8b-3ad21bb31949/4DNFI2MTBBLH.fastq.gz", "@id": "/files-fastq/4DNFI2MTBBLH/", "display_title": "4DNFI2MTBBLH.fastq.gz", "md5sum": "908fa9de14e4123d387546e4eccf68b6", "file_classification": "raw file", "upload_key": "98dd2865-6b41-4517-af8b-3ad21bb31949/4DNFI2MTBBLH.fastq.gz", "accession": "4DNFI2MTBBLH", "uuid": "98dd2865-6b41-4517-af8b-3ad21bb31949", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 110402615, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9d86e7ce-9d04-49d7-a5b9-c109099c63b9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2388839, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2MTBBLH/fastqc_report.html", "@id": "/quality-metrics-fastqc/9d86e7ce-9d04-49d7-a5b9-c109099c63b9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFSNDV87/@@download/4DNFIFSNDV87.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e4384751-7aa7-46d0-a24f-7845ef649c98/4DNFIFSNDV87.fastq.gz", "@id": "/files-fastq/4DNFIFSNDV87/", "display_title": "4DNFIFSNDV87.fastq.gz", "md5sum": "1439c4b55e5696f02b7564214895f596", "file_classification": "raw file", "upload_key": "e4384751-7aa7-46d0-a24f-7845ef649c98/4DNFIFSNDV87.fastq.gz", "accession": "4DNFIFSNDV87", "uuid": "e4384751-7aa7-46d0-a24f-7845ef649c98", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 200128133, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b628672a-9f02-4b0c-bea2-b0c04ff8bdb4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4370870, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFSNDV87/fastqc_report.html", "@id": "/quality-metrics-fastqc/b628672a-9f02-4b0c-bea2-b0c04ff8bdb4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI4CULKP8/@@download/4DNFI4CULKP8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6520a39f-008d-46c9-a4e6-cb7d029333a2/4DNFI4CULKP8.fastq.gz", "@id": "/files-fastq/4DNFI4CULKP8/", "display_title": "4DNFI4CULKP8.fastq.gz", "md5sum": "7b6fc0c8543b45744f38fb1e6e632f6f", "file_classification": "raw file", "upload_key": "6520a39f-008d-46c9-a4e6-cb7d029333a2/4DNFI4CULKP8.fastq.gz", "accession": "4DNFI4CULKP8", "uuid": "6520a39f-008d-46c9-a4e6-cb7d029333a2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 139036728, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8e7c2f81-3f26-4715-a43b-63666528b09a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3067894, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4CULKP8/fastqc_report.html", "@id": "/quality-metrics-fastqc/8e7c2f81-3f26-4715-a43b-63666528b09a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZ8O11FC/@@download/4DNFIZ8O11FC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/48768b59-cab2-4c71-a8f9-63ecc547dd23/4DNFIZ8O11FC.fastq.gz", "@id": "/files-fastq/4DNFIZ8O11FC/", "display_title": "4DNFIZ8O11FC.fastq.gz", "md5sum": "dd3ef9994444f86f9cf50c1a7e4d2309", "file_classification": "raw file", "upload_key": "48768b59-cab2-4c71-a8f9-63ecc547dd23/4DNFIZ8O11FC.fastq.gz", "accession": "4DNFIZ8O11FC", "uuid": "48768b59-cab2-4c71-a8f9-63ecc547dd23", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 108660883, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "08f0283e-38d7-4d11-9e3d-99b3c1e92a7f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2401219, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZ8O11FC/fastqc_report.html", "@id": "/quality-metrics-fastqc/08f0283e-38d7-4d11-9e3d-99b3c1e92a7f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIT1GO8CS/@@download/4DNFIT1GO8CS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2bd259d1-8555-4e54-8d7a-7e42aa080cd3/4DNFIT1GO8CS.fastq.gz", "@id": "/files-fastq/4DNFIT1GO8CS/", "display_title": "4DNFIT1GO8CS.fastq.gz", "md5sum": "fe0320b353f6cb0147dc79726e077a8a", "file_classification": "raw file", "upload_key": "2bd259d1-8555-4e54-8d7a-7e42aa080cd3/4DNFIT1GO8CS.fastq.gz", "accession": "4DNFIT1GO8CS", "uuid": "2bd259d1-8555-4e54-8d7a-7e42aa080cd3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 134487598, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "134c24bb-acbd-4f62-b839-ab313d637ed6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2974343, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT1GO8CS/fastqc_report.html", "@id": "/quality-metrics-fastqc/134c24bb-acbd-4f62-b839-ab313d637ed6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWCPKBDY/@@download/4DNFIWCPKBDY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ff3bcc17-fc51-4230-ab2d-9dbc1371b72f/4DNFIWCPKBDY.fastq.gz", "@id": "/files-fastq/4DNFIWCPKBDY/", "display_title": "4DNFIWCPKBDY.fastq.gz", "md5sum": "1680a900e43a38af52f942433db45d40", "file_classification": "raw file", "upload_key": "ff3bcc17-fc51-4230-ab2d-9dbc1371b72f/4DNFIWCPKBDY.fastq.gz", "accession": "4DNFIWCPKBDY", "uuid": "ff3bcc17-fc51-4230-ab2d-9dbc1371b72f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 93870019, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9a416d40-ca76-4cee-b3c9-29bfdb679638", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2047290, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWCPKBDY/fastqc_report.html", "@id": "/quality-metrics-fastqc/9a416d40-ca76-4cee-b3c9-29bfdb679638/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJ5I76I3/@@download/4DNFIJ5I76I3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/10d6d7b5-e855-49da-b656-a0fc086ac41e/4DNFIJ5I76I3.fastq.gz", "@id": "/files-fastq/4DNFIJ5I76I3/", "display_title": "4DNFIJ5I76I3.fastq.gz", "md5sum": "790c74a3abbf86d8fbe75522bab331c7", "file_classification": "raw file", "upload_key": "10d6d7b5-e855-49da-b656-a0fc086ac41e/4DNFIJ5I76I3.fastq.gz", "accession": "4DNFIJ5I76I3", "uuid": "10d6d7b5-e855-49da-b656-a0fc086ac41e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 133761788, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f3df4b55-aeda-4634-85e7-781e00d891a6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2944087, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ5I76I3/fastqc_report.html", "@id": "/quality-metrics-fastqc/f3df4b55-aeda-4634-85e7-781e00d891a6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBZN4JRY/@@download/4DNFIBZN4JRY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/daa7b6e5-f718-408c-8a4a-213b15067b52/4DNFIBZN4JRY.fastq.gz", "@id": "/files-fastq/4DNFIBZN4JRY/", "display_title": "4DNFIBZN4JRY.fastq.gz", "md5sum": "f86a4d4b3fbb37fdd345133be6296f53", "file_classification": "raw file", "upload_key": "daa7b6e5-f718-408c-8a4a-213b15067b52/4DNFIBZN4JRY.fastq.gz", "accession": "4DNFIBZN4JRY", "uuid": "daa7b6e5-f718-408c-8a4a-213b15067b52", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 49681601, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "99fbfd41-d827-40e4-889b-4e7fefecd292", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1079617, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBZN4JRY/fastqc_report.html", "@id": "/quality-metrics-fastqc/99fbfd41-d827-40e4-889b-4e7fefecd292/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI4LFG6NH/@@download/4DNFI4LFG6NH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d7267d44-1f21-43d9-a5e0-1a66d38845da/4DNFI4LFG6NH.fastq.gz", "@id": "/files-fastq/4DNFI4LFG6NH/", "display_title": "4DNFI4LFG6NH.fastq.gz", "md5sum": "dc2f57bc3c9a142d87bf2040d7fdf795", "file_classification": "raw file", "upload_key": "d7267d44-1f21-43d9-a5e0-1a66d38845da/4DNFI4LFG6NH.fastq.gz", "accession": "4DNFI4LFG6NH", "uuid": "d7267d44-1f21-43d9-a5e0-1a66d38845da", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 92168317, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "527b9e9f-67ea-4c6f-9f34-6b2a58623588", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2024191, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4LFG6NH/fastqc_report.html", "@id": "/quality-metrics-fastqc/527b9e9f-67ea-4c6f-9f34-6b2a58623588/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBTOJ48B/@@download/4DNFIBTOJ48B.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fa4177fc-98b6-4440-a935-88db7c089d86/4DNFIBTOJ48B.fastq.gz", "@id": "/files-fastq/4DNFIBTOJ48B/", "display_title": "4DNFIBTOJ48B.fastq.gz", "md5sum": "6eef15b6d20440cc662df938e5466c61", "file_classification": "raw file", "upload_key": "fa4177fc-98b6-4440-a935-88db7c089d86/4DNFIBTOJ48B.fastq.gz", "accession": "4DNFIBTOJ48B", "uuid": "fa4177fc-98b6-4440-a935-88db7c089d86", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 168103449, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "831bef40-c583-4ded-a495-de3d1bcf4c8a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3711357, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBTOJ48B/fastqc_report.html", "@id": "/quality-metrics-fastqc/831bef40-c583-4ded-a495-de3d1bcf4c8a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2QD8JQT/@@download/4DNFI2QD8JQT.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b6fe0a08-0d41-4925-b9a4-6447dc403603/4DNFI2QD8JQT.fastq.gz", "@id": "/files-fastq/4DNFI2QD8JQT/", "display_title": "4DNFI2QD8JQT.fastq.gz", "md5sum": "7143e4e6f15cefce6867b78ed0b56b19", "file_classification": "raw file", "upload_key": "b6fe0a08-0d41-4925-b9a4-6447dc403603/4DNFI2QD8JQT.fastq.gz", "accession": "4DNFI2QD8JQT", "uuid": "b6fe0a08-0d41-4925-b9a4-6447dc403603", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 148284227, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c5e3cb09-3b94-45e8-a8ed-ad75d01aa7c2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3278250, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2QD8JQT/fastqc_report.html", "@id": "/quality-metrics-fastqc/c5e3cb09-3b94-45e8-a8ed-ad75d01aa7c2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFII7DIKLZ/@@download/4DNFII7DIKLZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1095bcec-65bd-4af1-8d4a-22a4ffccbc7f/4DNFII7DIKLZ.fastq.gz", "@id": "/files-fastq/4DNFII7DIKLZ/", "display_title": "4DNFII7DIKLZ.fastq.gz", "md5sum": "036c03a7496e7188eee72cbcc55a218f", "file_classification": "raw file", "upload_key": "1095bcec-65bd-4af1-8d4a-22a4ffccbc7f/4DNFII7DIKLZ.fastq.gz", "accession": "4DNFII7DIKLZ", "uuid": "1095bcec-65bd-4af1-8d4a-22a4ffccbc7f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 178288604, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7eef0be5-6368-42b9-be15-590f5b070ae6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3975883, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFII7DIKLZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/7eef0be5-6368-42b9-be15-590f5b070ae6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIO85RLZI/@@download/4DNFIO85RLZI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/80b68978-ba65-48d4-89f6-37e089787550/4DNFIO85RLZI.fastq.gz", "@id": "/files-fastq/4DNFIO85RLZI/", "display_title": "4DNFIO85RLZI.fastq.gz", "md5sum": "8f87541b161779733d9c980661afbdc8", "file_classification": "raw file", "upload_key": "80b68978-ba65-48d4-89f6-37e089787550/4DNFIO85RLZI.fastq.gz", "accession": "4DNFIO85RLZI", "uuid": "80b68978-ba65-48d4-89f6-37e089787550", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 179204537, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2b1cbf7d-0fd5-436a-8116-a30fc576b565", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3982850, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIO85RLZI/fastqc_report.html", "@id": "/quality-metrics-fastqc/2b1cbf7d-0fd5-436a-8116-a30fc576b565/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZO7LHXX/@@download/4DNFIZO7LHXX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/32db0512-cb5d-4cc2-8bb1-c53a7f5f83d2/4DNFIZO7LHXX.fastq.gz", "@id": "/files-fastq/4DNFIZO7LHXX/", "display_title": "4DNFIZO7LHXX.fastq.gz", "md5sum": "f249300e57d239bba28d07b6f75aace2", "file_classification": "raw file", "upload_key": "32db0512-cb5d-4cc2-8bb1-c53a7f5f83d2/4DNFIZO7LHXX.fastq.gz", "accession": "4DNFIZO7LHXX", "uuid": "32db0512-cb5d-4cc2-8bb1-c53a7f5f83d2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 131675608, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d047d607-922b-420f-a50f-d2a772914ccb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2900606, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZO7LHXX/fastqc_report.html", "@id": "/quality-metrics-fastqc/d047d607-922b-420f-a50f-d2a772914ccb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIP75F99G/@@download/4DNFIP75F99G.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ce4495a7-8d9d-4314-9fb5-9d6fab09168a/4DNFIP75F99G.fastq.gz", "@id": "/files-fastq/4DNFIP75F99G/", "display_title": "4DNFIP75F99G.fastq.gz", "md5sum": "476309c621799124ddf39d7d7b9f5813", "file_classification": "raw file", "upload_key": "ce4495a7-8d9d-4314-9fb5-9d6fab09168a/4DNFIP75F99G.fastq.gz", "accession": "4DNFIP75F99G", "uuid": "ce4495a7-8d9d-4314-9fb5-9d6fab09168a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 86282993, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1579dd44-0922-4091-b5c5-45aa50eae93f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1900354, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIP75F99G/fastqc_report.html", "@id": "/quality-metrics-fastqc/1579dd44-0922-4091-b5c5-45aa50eae93f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7XZWFU9/@@download/4DNFI7XZWFU9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6f660368-ff97-4080-941b-cf69e4a7ebc3/4DNFI7XZWFU9.fastq.gz", "@id": "/files-fastq/4DNFI7XZWFU9/", "display_title": "4DNFI7XZWFU9.fastq.gz", "md5sum": "dbd50d13755a3df27a892bcfd26cd9f1", "file_classification": "raw file", "upload_key": "6f660368-ff97-4080-941b-cf69e4a7ebc3/4DNFI7XZWFU9.fastq.gz", "accession": "4DNFI7XZWFU9", "uuid": "6f660368-ff97-4080-941b-cf69e4a7ebc3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 121038834, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1136718a-9ad7-4347-b9c0-5bef904d6e6a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2675208, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7XZWFU9/fastqc_report.html", "@id": "/quality-metrics-fastqc/1136718a-9ad7-4347-b9c0-5bef904d6e6a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUXNATZQ/@@download/4DNFIUXNATZQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d0718cf8-3070-41bf-96f2-d91005c4dd50/4DNFIUXNATZQ.fastq.gz", "@id": "/files-fastq/4DNFIUXNATZQ/", "display_title": "4DNFIUXNATZQ.fastq.gz", "md5sum": "28b1b241e3dfe3d8680927d7a35d4f05", "file_classification": "raw file", "upload_key": "d0718cf8-3070-41bf-96f2-d91005c4dd50/4DNFIUXNATZQ.fastq.gz", "accession": "4DNFIUXNATZQ", "uuid": "d0718cf8-3070-41bf-96f2-d91005c4dd50", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 87961424, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7fb38cc6-d171-4e99-8dab-41492c4bd972", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1937939, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUXNATZQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/7fb38cc6-d171-4e99-8dab-41492c4bd972/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDL5T4CV/@@download/4DNFIDL5T4CV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0d060774-f723-4202-b281-39c186ea2d55/4DNFIDL5T4CV.fastq.gz", "@id": "/files-fastq/4DNFIDL5T4CV/", "display_title": "4DNFIDL5T4CV.fastq.gz", "md5sum": "5b094db0bd95cc53c591ae645bc66c7d", "file_classification": "raw file", "upload_key": "0d060774-f723-4202-b281-39c186ea2d55/4DNFIDL5T4CV.fastq.gz", "accession": "4DNFIDL5T4CV", "uuid": "0d060774-f723-4202-b281-39c186ea2d55", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 86038821, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eb5bd6d8-c97b-493b-816b-43e196a51be1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1911927, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDL5T4CV/fastqc_report.html", "@id": "/quality-metrics-fastqc/eb5bd6d8-c97b-493b-816b-43e196a51be1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB2LBSEX/@@download/4DNFIB2LBSEX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bfc1d4cb-282b-4ed4-b6a3-ed8632bff035/4DNFIB2LBSEX.fastq.gz", "@id": "/files-fastq/4DNFIB2LBSEX/", "display_title": "4DNFIB2LBSEX.fastq.gz", "md5sum": "167961c72767e77ee42011fd9878db8a", "file_classification": "raw file", "upload_key": "bfc1d4cb-282b-4ed4-b6a3-ed8632bff035/4DNFIB2LBSEX.fastq.gz", "accession": "4DNFIB2LBSEX", "uuid": "bfc1d4cb-282b-4ed4-b6a3-ed8632bff035", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 126482257, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f1faec77-121f-4f2d-b664-bddb1cb59139", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2815830, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB2LBSEX/fastqc_report.html", "@id": "/quality-metrics-fastqc/f1faec77-121f-4f2d-b664-bddb1cb59139/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOCEZ7VX/@@download/4DNFIOCEZ7VX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/05e8c9ab-56ce-43b9-881c-f232ab9d5aae/4DNFIOCEZ7VX.fastq.gz", "@id": "/files-fastq/4DNFIOCEZ7VX/", "display_title": "4DNFIOCEZ7VX.fastq.gz", "md5sum": "40aa6f23717ee65461fcb020dba2788d", "file_classification": "raw file", "upload_key": "05e8c9ab-56ce-43b9-881c-f232ab9d5aae/4DNFIOCEZ7VX.fastq.gz", "accession": "4DNFIOCEZ7VX", "uuid": "05e8c9ab-56ce-43b9-881c-f232ab9d5aae", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 66628828, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ade68169-92ef-4aeb-894c-def3466908cb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1383970, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOCEZ7VX/fastqc_report.html", "@id": "/quality-metrics-fastqc/ade68169-92ef-4aeb-894c-def3466908cb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITUYZ6OK/@@download/4DNFITUYZ6OK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f76a3ab5-55ee-4c0b-a9d3-ee6a09f1d16e/4DNFITUYZ6OK.fastq.gz", "@id": "/files-fastq/4DNFITUYZ6OK/", "display_title": "4DNFITUYZ6OK.fastq.gz", "md5sum": "46cd4dfead9fae6ddbb8227ce130ea3a", "file_classification": "raw file", "upload_key": "f76a3ab5-55ee-4c0b-a9d3-ee6a09f1d16e/4DNFITUYZ6OK.fastq.gz", "accession": "4DNFITUYZ6OK", "uuid": "f76a3ab5-55ee-4c0b-a9d3-ee6a09f1d16e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 108742260, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bef4a647-91b7-41f7-b666-1421b5f04d78", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2394154, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITUYZ6OK/fastqc_report.html", "@id": "/quality-metrics-fastqc/bef4a647-91b7-41f7-b666-1421b5f04d78/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIE6OCP5F/@@download/4DNFIE6OCP5F.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/dc75a1f6-4686-40d3-af08-de8c519c8bff/4DNFIE6OCP5F.fastq.gz", "@id": "/files-fastq/4DNFIE6OCP5F/", "display_title": "4DNFIE6OCP5F.fastq.gz", "md5sum": "4c3a4564532e9ae823f00c4709f4ee59", "file_classification": "raw file", "upload_key": "dc75a1f6-4686-40d3-af08-de8c519c8bff/4DNFIE6OCP5F.fastq.gz", "accession": "4DNFIE6OCP5F", "uuid": "dc75a1f6-4686-40d3-af08-de8c519c8bff", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 104921198, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8b0f8201-bb01-4667-bc25-de13d8327e72", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2317913, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE6OCP5F/fastqc_report.html", "@id": "/quality-metrics-fastqc/8b0f8201-bb01-4667-bc25-de13d8327e72/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3HPTJO8/@@download/4DNFI3HPTJO8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d45c9d8e-ccc3-47c2-aea6-8385e98b52cf/4DNFI3HPTJO8.fastq.gz", "@id": "/files-fastq/4DNFI3HPTJO8/", "display_title": "4DNFI3HPTJO8.fastq.gz", "md5sum": "91f6fee3eb4c11646da3fd2a5ef663b0", "file_classification": "raw file", "upload_key": "d45c9d8e-ccc3-47c2-aea6-8385e98b52cf/4DNFI3HPTJO8.fastq.gz", "accession": "4DNFI3HPTJO8", "uuid": "d45c9d8e-ccc3-47c2-aea6-8385e98b52cf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 41681183, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eaf35287-9d45-41a9-a615-21c703f84feb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 910382, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3HPTJO8/fastqc_report.html", "@id": "/quality-metrics-fastqc/eaf35287-9d45-41a9-a615-21c703f84feb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYFLOC8S/@@download/4DNFIYFLOC8S.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8231cb46-bb37-48e8-a2af-b7fdf92474b5/4DNFIYFLOC8S.fastq.gz", "@id": "/files-fastq/4DNFIYFLOC8S/", "display_title": "4DNFIYFLOC8S.fastq.gz", "md5sum": "11323b4102a032ca649bebc8875a7acb", "file_classification": "raw file", "upload_key": "8231cb46-bb37-48e8-a2af-b7fdf92474b5/4DNFIYFLOC8S.fastq.gz", "accession": "4DNFIYFLOC8S", "uuid": "8231cb46-bb37-48e8-a2af-b7fdf92474b5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 117383524, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ca43d961-0e9b-4bc5-8e7c-e5dca8563e1c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2602676, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYFLOC8S/fastqc_report.html", "@id": "/quality-metrics-fastqc/ca43d961-0e9b-4bc5-8e7c-e5dca8563e1c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3WJQ9L5/@@download/4DNFI3WJQ9L5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e668f731-5edd-40e4-ae2f-fb058deaf9be/4DNFI3WJQ9L5.fastq.gz", "@id": "/files-fastq/4DNFI3WJQ9L5/", "display_title": "4DNFI3WJQ9L5.fastq.gz", "md5sum": "af1fb14a6ce312aa2ed5854e8e743b57", "file_classification": "raw file", "upload_key": "e668f731-5edd-40e4-ae2f-fb058deaf9be/4DNFI3WJQ9L5.fastq.gz", "accession": "4DNFI3WJQ9L5", "uuid": "e668f731-5edd-40e4-ae2f-fb058deaf9be", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 156255043, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4681fe79-62f8-4dc2-a42d-fd5d56e737b5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3452199, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3WJQ9L5/fastqc_report.html", "@id": "/quality-metrics-fastqc/4681fe79-62f8-4dc2-a42d-fd5d56e737b5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1X78FWL/@@download/4DNFI1X78FWL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b076db5d-1cb7-4cf6-a4f8-880e5e4a09c1/4DNFI1X78FWL.fastq.gz", "@id": "/files-fastq/4DNFI1X78FWL/", "display_title": "4DNFI1X78FWL.fastq.gz", "md5sum": "34ca55629a314687ba86ed7a53851693", "file_classification": "raw file", "upload_key": "b076db5d-1cb7-4cf6-a4f8-880e5e4a09c1/4DNFI1X78FWL.fastq.gz", "accession": "4DNFI1X78FWL", "uuid": "b076db5d-1cb7-4cf6-a4f8-880e5e4a09c1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 108996954, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "427bbb48-1b9d-4f02-9a7c-ba9416ad3e7e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2393133, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1X78FWL/fastqc_report.html", "@id": "/quality-metrics-fastqc/427bbb48-1b9d-4f02-9a7c-ba9416ad3e7e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJ6O7WXM/@@download/4DNFIJ6O7WXM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6609f221-6148-4438-8404-2679b2598655/4DNFIJ6O7WXM.fastq.gz", "@id": "/files-fastq/4DNFIJ6O7WXM/", "display_title": "4DNFIJ6O7WXM.fastq.gz", "md5sum": "9392183f4755cbafd354edb15645f89f", "file_classification": "raw file", "upload_key": "6609f221-6148-4438-8404-2679b2598655/4DNFIJ6O7WXM.fastq.gz", "accession": "4DNFIJ6O7WXM", "uuid": "6609f221-6148-4438-8404-2679b2598655", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 137013745, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bf6d985f-dd23-4149-aff7-d1af8bc3140b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3044495, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ6O7WXM/fastqc_report.html", "@id": "/quality-metrics-fastqc/bf6d985f-dd23-4149-aff7-d1af8bc3140b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIICVGTKP/@@download/4DNFIICVGTKP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d4dc2724-200d-42cd-af3c-67f6cf4b8557/4DNFIICVGTKP.fastq.gz", "@id": "/files-fastq/4DNFIICVGTKP/", "display_title": "4DNFIICVGTKP.fastq.gz", "md5sum": "96f0c24b59634d8af7170ca33af023a5", "file_classification": "raw file", "upload_key": "d4dc2724-200d-42cd-af3c-67f6cf4b8557/4DNFIICVGTKP.fastq.gz", "accession": "4DNFIICVGTKP", "uuid": "d4dc2724-200d-42cd-af3c-67f6cf4b8557", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 142316715, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0bf56d5f-3964-4f8e-baf1-75417bfa7096", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3144750, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIICVGTKP/fastqc_report.html", "@id": "/quality-metrics-fastqc/0bf56d5f-3964-4f8e-baf1-75417bfa7096/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5Z5TNCJ/@@download/4DNFI5Z5TNCJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d0408703-ac9b-4acc-8a1a-0cee9091193a/4DNFI5Z5TNCJ.fastq.gz", "@id": "/files-fastq/4DNFI5Z5TNCJ/", "display_title": "4DNFI5Z5TNCJ.fastq.gz", "md5sum": "88d200b1fa0a1ddca82c1674f2f4a89a", "file_classification": "raw file", "upload_key": "d0408703-ac9b-4acc-8a1a-0cee9091193a/4DNFI5Z5TNCJ.fastq.gz", "accession": "4DNFI5Z5TNCJ", "uuid": "d0408703-ac9b-4acc-8a1a-0cee9091193a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 118630016, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "13c0b96c-7bbc-4b56-9965-c304fb3f1fd8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2618683, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5Z5TNCJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/13c0b96c-7bbc-4b56-9965-c304fb3f1fd8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI35OCR6L/@@download/4DNFI35OCR6L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/477421c1-fd5e-4324-8452-cfec0c22f2ad/4DNFI35OCR6L.fastq.gz", "@id": "/files-fastq/4DNFI35OCR6L/", "display_title": "4DNFI35OCR6L.fastq.gz", "md5sum": "5b38333cac2ba3e028dfb19bd954f929", "file_classification": "raw file", "upload_key": "477421c1-fd5e-4324-8452-cfec0c22f2ad/4DNFI35OCR6L.fastq.gz", "accession": "4DNFI35OCR6L", "uuid": "477421c1-fd5e-4324-8452-cfec0c22f2ad", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 83923512, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "95b8dc1d-6518-4682-b22e-fcafb96135d3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1858156, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI35OCR6L/fastqc_report.html", "@id": "/quality-metrics-fastqc/95b8dc1d-6518-4682-b22e-fcafb96135d3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFG416QR/@@download/4DNFIFG416QR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d5a52ab4-30f1-4a8a-aecf-86d625912895/4DNFIFG416QR.fastq.gz", "@id": "/files-fastq/4DNFIFG416QR/", "display_title": "4DNFIFG416QR.fastq.gz", "md5sum": "9da60f8158ed56161d5f77039e501338", "file_classification": "raw file", "upload_key": "d5a52ab4-30f1-4a8a-aecf-86d625912895/4DNFIFG416QR.fastq.gz", "accession": "4DNFIFG416QR", "uuid": "d5a52ab4-30f1-4a8a-aecf-86d625912895", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 134767710, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c50f37b5-c391-49c5-98b7-bb71bdb2d45f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2964067, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFG416QR/fastqc_report.html", "@id": "/quality-metrics-fastqc/c50f37b5-c391-49c5-98b7-bb71bdb2d45f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUAEHCNV/@@download/4DNFIUAEHCNV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d681efdb-58a3-4c70-97a7-4d616e6c92ee/4DNFIUAEHCNV.fastq.gz", "@id": "/files-fastq/4DNFIUAEHCNV/", "display_title": "4DNFIUAEHCNV.fastq.gz", "md5sum": "cf87f032cc3b0a7c237ef8bea6bb9667", "file_classification": "raw file", "upload_key": "d681efdb-58a3-4c70-97a7-4d616e6c92ee/4DNFIUAEHCNV.fastq.gz", "accession": "4DNFIUAEHCNV", "uuid": "d681efdb-58a3-4c70-97a7-4d616e6c92ee", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 56856477, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "aadb7476-2645-4013-a367-9eb08886ab47", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1235327, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUAEHCNV/fastqc_report.html", "@id": "/quality-metrics-fastqc/aadb7476-2645-4013-a367-9eb08886ab47/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIY3PPTPQ/@@download/4DNFIY3PPTPQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/33aa8394-b94d-47df-b9bb-7e430926975f/4DNFIY3PPTPQ.fastq.gz", "@id": "/files-fastq/4DNFIY3PPTPQ/", "display_title": "4DNFIY3PPTPQ.fastq.gz", "md5sum": "e302d65c125da4cc5bd4818672727bef", "file_classification": "raw file", "upload_key": "33aa8394-b94d-47df-b9bb-7e430926975f/4DNFIY3PPTPQ.fastq.gz", "accession": "4DNFIY3PPTPQ", "uuid": "33aa8394-b94d-47df-b9bb-7e430926975f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 112226434, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "606a857e-ad4f-4313-9313-3d7337d832f0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2466889, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIY3PPTPQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/606a857e-ad4f-4313-9313-3d7337d832f0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2CQ8WX8/@@download/4DNFI2CQ8WX8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e6c6a07f-83c8-4ee9-894c-3c131a0c7908/4DNFI2CQ8WX8.fastq.gz", "@id": "/files-fastq/4DNFI2CQ8WX8/", "display_title": "4DNFI2CQ8WX8.fastq.gz", "md5sum": "8639a1eceb546d81cab352424cca0205", "file_classification": "raw file", "upload_key": "e6c6a07f-83c8-4ee9-894c-3c131a0c7908/4DNFI2CQ8WX8.fastq.gz", "accession": "4DNFI2CQ8WX8", "uuid": "e6c6a07f-83c8-4ee9-894c-3c131a0c7908", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 48477220, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2974ef63-5e12-4c1f-81bf-0ed21dc7dc1d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1057846, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2CQ8WX8/fastqc_report.html", "@id": "/quality-metrics-fastqc/2974ef63-5e12-4c1f-81bf-0ed21dc7dc1d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFUN4QIN/@@download/4DNFIFUN4QIN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/715da6a4-72c9-4b7d-83c4-bcd515531da0/4DNFIFUN4QIN.fastq.gz", "@id": "/files-fastq/4DNFIFUN4QIN/", "display_title": "4DNFIFUN4QIN.fastq.gz", "md5sum": "9481791046c51079b828f34d96528c9e", "file_classification": "raw file", "upload_key": "715da6a4-72c9-4b7d-83c4-bcd515531da0/4DNFIFUN4QIN.fastq.gz", "accession": "4DNFIFUN4QIN", "uuid": "715da6a4-72c9-4b7d-83c4-bcd515531da0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 143581691, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6bec5c56-dae3-4767-b636-3e9b1a2c5e21", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3187629, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFUN4QIN/fastqc_report.html", "@id": "/quality-metrics-fastqc/6bec5c56-dae3-4767-b636-3e9b1a2c5e21/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXK22YS4/@@download/4DNFIXK22YS4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/227f13b5-167c-4d9e-a5e1-6eb9d291fcbe/4DNFIXK22YS4.fastq.gz", "@id": "/files-fastq/4DNFIXK22YS4/", "display_title": "4DNFIXK22YS4.fastq.gz", "md5sum": "13fa04866410000d8bd93103acc3c697", "file_classification": "raw file", "upload_key": "227f13b5-167c-4d9e-a5e1-6eb9d291fcbe/4DNFIXK22YS4.fastq.gz", "accession": "4DNFIXK22YS4", "uuid": "227f13b5-167c-4d9e-a5e1-6eb9d291fcbe", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 84795252, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "05dd8c5d-43f5-4083-ba96-1cf0c3e820c5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1873867, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXK22YS4/fastqc_report.html", "@id": "/quality-metrics-fastqc/05dd8c5d-43f5-4083-ba96-1cf0c3e820c5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIEHGGDJ5/@@download/4DNFIEHGGDJ5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/67d15856-99f5-4634-9cd6-255f01f46239/4DNFIEHGGDJ5.fastq.gz", "@id": "/files-fastq/4DNFIEHGGDJ5/", "display_title": "4DNFIEHGGDJ5.fastq.gz", "md5sum": "925ac1e69838433f8a125a90461ee753", "file_classification": "raw file", "upload_key": "67d15856-99f5-4634-9cd6-255f01f46239/4DNFIEHGGDJ5.fastq.gz", "accession": "4DNFIEHGGDJ5", "uuid": "67d15856-99f5-4634-9cd6-255f01f46239", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 129430710, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "985b3a08-6112-4976-94cf-3921938287e4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2849373, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEHGGDJ5/fastqc_report.html", "@id": "/quality-metrics-fastqc/985b3a08-6112-4976-94cf-3921938287e4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIN2PO3DA/@@download/4DNFIN2PO3DA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/31a323ca-8d08-4bf4-8d57-bbda82fdff91/4DNFIN2PO3DA.fastq.gz", "@id": "/files-fastq/4DNFIN2PO3DA/", "display_title": "4DNFIN2PO3DA.fastq.gz", "md5sum": "93d47e1a1bc973c4c8c8805d81f33d2e", "file_classification": "raw file", "upload_key": "31a323ca-8d08-4bf4-8d57-bbda82fdff91/4DNFIN2PO3DA.fastq.gz", "accession": "4DNFIN2PO3DA", "uuid": "31a323ca-8d08-4bf4-8d57-bbda82fdff91", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 66557453, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a7832c01-bcb0-495f-9bf1-fa87c11e4568", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1478710, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIN2PO3DA/fastqc_report.html", "@id": "/quality-metrics-fastqc/a7832c01-bcb0-495f-9bf1-fa87c11e4568/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9M9OM43/@@download/4DNFI9M9OM43.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8165ea4d-9fac-46f7-af76-e72e330658d2/4DNFI9M9OM43.fastq.gz", "@id": "/files-fastq/4DNFI9M9OM43/", "display_title": "4DNFI9M9OM43.fastq.gz", "md5sum": "233cd0779440c2c5a1d078580ccdac65", "file_classification": "raw file", "upload_key": "8165ea4d-9fac-46f7-af76-e72e330658d2/4DNFI9M9OM43.fastq.gz", "accession": "4DNFI9M9OM43", "uuid": "8165ea4d-9fac-46f7-af76-e72e330658d2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 95784313, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "400e5e4d-b55e-4d5f-9045-eabf88f4a7b4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2101160, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9M9OM43/fastqc_report.html", "@id": "/quality-metrics-fastqc/400e5e4d-b55e-4d5f-9045-eabf88f4a7b4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILCSLQOI/@@download/4DNFILCSLQOI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/321791e6-8c9b-42b8-bb2d-5a3b7c0b9aac/4DNFILCSLQOI.fastq.gz", "@id": "/files-fastq/4DNFILCSLQOI/", "display_title": "4DNFILCSLQOI.fastq.gz", "md5sum": "beb219c5cf9e779c447dcfb8fcb97d97", "file_classification": "raw file", "upload_key": "321791e6-8c9b-42b8-bb2d-5a3b7c0b9aac/4DNFILCSLQOI.fastq.gz", "accession": "4DNFILCSLQOI", "uuid": "321791e6-8c9b-42b8-bb2d-5a3b7c0b9aac", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 31969944, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "274fd0b8-9848-4217-8042-19b8107a3d70", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 697440, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILCSLQOI/fastqc_report.html", "@id": "/quality-metrics-fastqc/274fd0b8-9848-4217-8042-19b8107a3d70/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDWDSXBN/@@download/4DNFIDWDSXBN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7d765a27-a763-409f-bf0d-57110d6485dd/4DNFIDWDSXBN.fastq.gz", "@id": "/files-fastq/4DNFIDWDSXBN/", "display_title": "4DNFIDWDSXBN.fastq.gz", "md5sum": "a535cce4bce5d559ce4e720ef2705740", "file_classification": "raw file", "upload_key": "7d765a27-a763-409f-bf0d-57110d6485dd/4DNFIDWDSXBN.fastq.gz", "accession": "4DNFIDWDSXBN", "uuid": "7d765a27-a763-409f-bf0d-57110d6485dd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 158683656, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2a61db0c-00ad-41f1-b05d-c297d64429c2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3524498, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDWDSXBN/fastqc_report.html", "@id": "/quality-metrics-fastqc/2a61db0c-00ad-41f1-b05d-c297d64429c2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITLBWVDR/@@download/4DNFITLBWVDR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ab4167d8-1d9a-4a8a-99b2-5d41e4176094/4DNFITLBWVDR.fastq.gz", "@id": "/files-fastq/4DNFITLBWVDR/", "display_title": "4DNFITLBWVDR.fastq.gz", "md5sum": "23eb851d4043c1fd5e3f1569985d7f71", "file_classification": "raw file", "upload_key": "ab4167d8-1d9a-4a8a-99b2-5d41e4176094/4DNFITLBWVDR.fastq.gz", "accession": "4DNFITLBWVDR", "uuid": "ab4167d8-1d9a-4a8a-99b2-5d41e4176094", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 101018126, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0f29a81b-f374-4bf8-95f6-eed1161bedf6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2230153, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITLBWVDR/fastqc_report.html", "@id": "/quality-metrics-fastqc/0f29a81b-f374-4bf8-95f6-eed1161bedf6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIY7VIKRQ/@@download/4DNFIY7VIKRQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e3e3163f-d33f-489b-bfd1-e22a930720b3/4DNFIY7VIKRQ.fastq.gz", "@id": "/files-fastq/4DNFIY7VIKRQ/", "display_title": "4DNFIY7VIKRQ.fastq.gz", "md5sum": "ba5450d5f172c1888cfaa57a31feb8f8", "file_classification": "raw file", "upload_key": "e3e3163f-d33f-489b-bfd1-e22a930720b3/4DNFIY7VIKRQ.fastq.gz", "accession": "4DNFIY7VIKRQ", "uuid": "e3e3163f-d33f-489b-bfd1-e22a930720b3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 1028588, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1302d604-dd33-4234-b5f3-f39aedd8a1a3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 20493, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIY7VIKRQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/1302d604-dd33-4234-b5f3-f39aedd8a1a3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUUH77OW/@@download/4DNFIUUH77OW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/36da970e-f0e8-4c2e-9a68-b2dddafaad89/4DNFIUUH77OW.fastq.gz", "@id": "/files-fastq/4DNFIUUH77OW/", "display_title": "4DNFIUUH77OW.fastq.gz", "md5sum": "c41296a4fb0b6652ce733a2f6199303d", "file_classification": "raw file", "upload_key": "36da970e-f0e8-4c2e-9a68-b2dddafaad89/4DNFIUUH77OW.fastq.gz", "accession": "4DNFIUUH77OW", "uuid": "36da970e-f0e8-4c2e-9a68-b2dddafaad89", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 163988040, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "652c2ee8-057b-4910-86ce-b2a359d3fc9b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3644678, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUUH77OW/fastqc_report.html", "@id": "/quality-metrics-fastqc/652c2ee8-057b-4910-86ce-b2a359d3fc9b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPYE1U7I/@@download/4DNFIPYE1U7I.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/07a3ff68-ca93-481e-9157-c170400927d0/4DNFIPYE1U7I.fastq.gz", "@id": "/files-fastq/4DNFIPYE1U7I/", "display_title": "4DNFIPYE1U7I.fastq.gz", "md5sum": "6c0137df1b158eb0726d0030760e986c", "file_classification": "raw file", "upload_key": "07a3ff68-ca93-481e-9157-c170400927d0/4DNFIPYE1U7I.fastq.gz", "accession": "4DNFIPYE1U7I", "uuid": "07a3ff68-ca93-481e-9157-c170400927d0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 107385611, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "110e4a09-7e98-4a0e-a26d-95cfa601d79d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2369284, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPYE1U7I/fastqc_report.html", "@id": "/quality-metrics-fastqc/110e4a09-7e98-4a0e-a26d-95cfa601d79d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGLXTBCO/@@download/4DNFIGLXTBCO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/73d2a128-a278-4ef1-97aa-9f683182c56d/4DNFIGLXTBCO.fastq.gz", "@id": "/files-fastq/4DNFIGLXTBCO/", "display_title": "4DNFIGLXTBCO.fastq.gz", "md5sum": "76a08719b08ca6ba210ad3b195d8bd27", "file_classification": "raw file", "upload_key": "73d2a128-a278-4ef1-97aa-9f683182c56d/4DNFIGLXTBCO.fastq.gz", "accession": "4DNFIGLXTBCO", "uuid": "73d2a128-a278-4ef1-97aa-9f683182c56d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 59826066, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d3d2c217-d5df-4466-b429-70336746ea4e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1314073, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGLXTBCO/fastqc_report.html", "@id": "/quality-metrics-fastqc/d3d2c217-d5df-4466-b429-70336746ea4e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIV3H96G5/@@download/4DNFIV3H96G5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/29aac565-3a1f-433e-914f-30dd8a29510a/4DNFIV3H96G5.fastq.gz", "@id": "/files-fastq/4DNFIV3H96G5/", "display_title": "4DNFIV3H96G5.fastq.gz", "md5sum": "21cf72ca12766177959057a6bfc17da6", "file_classification": "raw file", "upload_key": "29aac565-3a1f-433e-914f-30dd8a29510a/4DNFIV3H96G5.fastq.gz", "accession": "4DNFIV3H96G5", "uuid": "29aac565-3a1f-433e-914f-30dd8a29510a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 141091064, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a87da6c5-62a3-4d01-8c40-155af4d53ae8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3144539, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIV3H96G5/fastqc_report.html", "@id": "/quality-metrics-fastqc/a87da6c5-62a3-4d01-8c40-155af4d53ae8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI76U5UBZ/@@download/4DNFI76U5UBZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d67cc897-3185-46ce-9917-b77fde1df3a2/4DNFI76U5UBZ.fastq.gz", "@id": "/files-fastq/4DNFI76U5UBZ/", "display_title": "4DNFI76U5UBZ.fastq.gz", "md5sum": "a0f155432072a4c0a0e8837d00d6d1e6", "file_classification": "raw file", "upload_key": "d67cc897-3185-46ce-9917-b77fde1df3a2/4DNFI76U5UBZ.fastq.gz", "accession": "4DNFI76U5UBZ", "uuid": "d67cc897-3185-46ce-9917-b77fde1df3a2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 97791628, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "86f9cefe-5f75-49a7-b14d-c5b816bcdc0f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2118072, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI76U5UBZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/86f9cefe-5f75-49a7-b14d-c5b816bcdc0f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMJ9V3V7/@@download/4DNFIMJ9V3V7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/558d90e9-b97f-4f83-85d1-6f6d0b7fe707/4DNFIMJ9V3V7.fastq.gz", "@id": "/files-fastq/4DNFIMJ9V3V7/", "display_title": "4DNFIMJ9V3V7.fastq.gz", "md5sum": "beeacaed21f316b79c76ee5970654fec", "file_classification": "raw file", "upload_key": "558d90e9-b97f-4f83-85d1-6f6d0b7fe707/4DNFIMJ9V3V7.fastq.gz", "accession": "4DNFIMJ9V3V7", "uuid": "558d90e9-b97f-4f83-85d1-6f6d0b7fe707", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 210507699, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5620e633-2c26-47e5-8817-0e40cece476b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4263188, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMJ9V3V7/fastqc_report.html", "@id": "/quality-metrics-fastqc/5620e633-2c26-47e5-8817-0e40cece476b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBHZ9K4T/@@download/4DNFIBHZ9K4T.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7a4b21a7-1922-46b8-b8fc-0ac87de2b70e/4DNFIBHZ9K4T.fastq.gz", "@id": "/files-fastq/4DNFIBHZ9K4T/", "display_title": "4DNFIBHZ9K4T.fastq.gz", "md5sum": "30b1e6977b1727940a128818fdf05ec9", "file_classification": "raw file", "upload_key": "7a4b21a7-1922-46b8-b8fc-0ac87de2b70e/4DNFIBHZ9K4T.fastq.gz", "accession": "4DNFIBHZ9K4T", "uuid": "7a4b21a7-1922-46b8-b8fc-0ac87de2b70e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 151723568, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6481f7b4-3dad-4b38-b5bc-74f340f03b5f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3308864, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBHZ9K4T/fastqc_report.html", "@id": "/quality-metrics-fastqc/6481f7b4-3dad-4b38-b5bc-74f340f03b5f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKD65W7R/@@download/4DNFIKD65W7R.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cc68f2d3-e1fb-470c-a286-08bbb33b890e/4DNFIKD65W7R.fastq.gz", "@id": "/files-fastq/4DNFIKD65W7R/", "display_title": "4DNFIKD65W7R.fastq.gz", "md5sum": "1d22b89cc5d0a6b0beb2475447807440", "file_classification": "raw file", "upload_key": "cc68f2d3-e1fb-470c-a286-08bbb33b890e/4DNFIKD65W7R.fastq.gz", "accession": "4DNFIKD65W7R", "uuid": "cc68f2d3-e1fb-470c-a286-08bbb33b890e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 245560208, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7cb966f4-e669-45d8-975c-62f351256f51", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4952729, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKD65W7R/fastqc_report.html", "@id": "/quality-metrics-fastqc/7cb966f4-e669-45d8-975c-62f351256f51/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIY6MR11L/@@download/4DNFIY6MR11L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/faca6b55-a179-405a-813d-7d87e835c9cf/4DNFIY6MR11L.fastq.gz", "@id": "/files-fastq/4DNFIY6MR11L/", "display_title": "4DNFIY6MR11L.fastq.gz", "md5sum": "54340ae65d94709cbf2bc23b974d4ac4", "file_classification": "raw file", "upload_key": "faca6b55-a179-405a-813d-7d87e835c9cf/4DNFIY6MR11L.fastq.gz", "accession": "4DNFIY6MR11L", "uuid": "faca6b55-a179-405a-813d-7d87e835c9cf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 83907589, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "95edcc90-cc4a-4275-9165-9d1fdbaca8f1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1829285, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIY6MR11L/fastqc_report.html", "@id": "/quality-metrics-fastqc/95edcc90-cc4a-4275-9165-9d1fdbaca8f1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI22XDNGH/@@download/4DNFI22XDNGH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9e16ee03-0501-4556-b759-0440b2e8604f/4DNFI22XDNGH.fastq.gz", "@id": "/files-fastq/4DNFI22XDNGH/", "display_title": "4DNFI22XDNGH.fastq.gz", "md5sum": "3e4ba3904a9f076aa9408b9ce06078bc", "file_classification": "raw file", "upload_key": "9e16ee03-0501-4556-b759-0440b2e8604f/4DNFI22XDNGH.fastq.gz", "accession": "4DNFI22XDNGH", "uuid": "9e16ee03-0501-4556-b759-0440b2e8604f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233574092, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "516cc518-5998-4000-aaf5-59194d87d91f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4754089, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI22XDNGH/fastqc_report.html", "@id": "/quality-metrics-fastqc/516cc518-5998-4000-aaf5-59194d87d91f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI73PI91I/@@download/4DNFI73PI91I.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8485b329-883d-4ba5-ab0c-c5985b6b32d5/4DNFI73PI91I.fastq.gz", "@id": "/files-fastq/4DNFI73PI91I/", "display_title": "4DNFI73PI91I.fastq.gz", "md5sum": "b4aea411fe02e0576f34c5aca1f74a78", "file_classification": "raw file", "upload_key": "8485b329-883d-4ba5-ab0c-c5985b6b32d5/4DNFI73PI91I.fastq.gz", "accession": "4DNFI73PI91I", "uuid": "8485b329-883d-4ba5-ab0c-c5985b6b32d5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 127634341, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1050e72c-1b07-4642-8487-c0d1ca536e29", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2805035, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI73PI91I/fastqc_report.html", "@id": "/quality-metrics-fastqc/1050e72c-1b07-4642-8487-c0d1ca536e29/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIG8UUV9X/@@download/4DNFIG8UUV9X.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/459ea3bf-4328-47de-bc64-38e08b9464e1/4DNFIG8UUV9X.fastq.gz", "@id": "/files-fastq/4DNFIG8UUV9X/", "display_title": "4DNFIG8UUV9X.fastq.gz", "md5sum": "3ac546c6fd8344029a2d15e6d0c55483", "file_classification": "raw file", "upload_key": "459ea3bf-4328-47de-bc64-38e08b9464e1/4DNFIG8UUV9X.fastq.gz", "accession": "4DNFIG8UUV9X", "uuid": "459ea3bf-4328-47de-bc64-38e08b9464e1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 200667445, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eebf8daa-4139-451f-bdcb-f26307516d46", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4081060, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIG8UUV9X/fastqc_report.html", "@id": "/quality-metrics-fastqc/eebf8daa-4139-451f-bdcb-f26307516d46/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB6258C9/@@download/4DNFIB6258C9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7f957507-e852-4fb2-881d-196a6a0a3a6b/4DNFIB6258C9.fastq.gz", "@id": "/files-fastq/4DNFIB6258C9/", "display_title": "4DNFIB6258C9.fastq.gz", "md5sum": "1247871f5624c4d08f74927a51c67b22", "file_classification": "raw file", "upload_key": "7f957507-e852-4fb2-881d-196a6a0a3a6b/4DNFIB6258C9.fastq.gz", "accession": "4DNFIB6258C9", "uuid": "7f957507-e852-4fb2-881d-196a6a0a3a6b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 143310742, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0d780a0d-0661-4a85-b510-34f00341f9ff", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3192690, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB6258C9/fastqc_report.html", "@id": "/quality-metrics-fastqc/0d780a0d-0661-4a85-b510-34f00341f9ff/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI4VLHVW6/@@download/4DNFI4VLHVW6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/48d71103-519c-423f-86bf-de7eab403f1c/4DNFI4VLHVW6.fastq.gz", "@id": "/files-fastq/4DNFI4VLHVW6/", "display_title": "4DNFI4VLHVW6.fastq.gz", "md5sum": "5ad14272bdcc39b1c5e6606bf8dc9c40", "file_classification": "raw file", "upload_key": "48d71103-519c-423f-86bf-de7eab403f1c/4DNFI4VLHVW6.fastq.gz", "accession": "4DNFI4VLHVW6", "uuid": "48d71103-519c-423f-86bf-de7eab403f1c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 337057514, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2111c9a8-e4a7-441b-82a4-90554a2314f2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6886142, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4VLHVW6/fastqc_report.html", "@id": "/quality-metrics-fastqc/2111c9a8-e4a7-441b-82a4-90554a2314f2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJPJOJPR/@@download/4DNFIJPJOJPR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c3d1ab2e-f554-4ca8-bf21-6f93f11c4c3f/4DNFIJPJOJPR.fastq.gz", "@id": "/files-fastq/4DNFIJPJOJPR/", "display_title": "4DNFIJPJOJPR.fastq.gz", "md5sum": "f4825854f0d24b26e0b0230589ee280a", "file_classification": "raw file", "upload_key": "c3d1ab2e-f554-4ca8-bf21-6f93f11c4c3f/4DNFIJPJOJPR.fastq.gz", "accession": "4DNFIJPJOJPR", "uuid": "c3d1ab2e-f554-4ca8-bf21-6f93f11c4c3f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 154235836, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "580bbe8c-408b-46dc-a022-0d2c8a4e4a41", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3446806, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJPJOJPR/fastqc_report.html", "@id": "/quality-metrics-fastqc/580bbe8c-408b-46dc-a022-0d2c8a4e4a41/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICUPRMEN/@@download/4DNFICUPRMEN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8d6d4909-fe11-4d60-b561-ab835b4c1764/4DNFICUPRMEN.fastq.gz", "@id": "/files-fastq/4DNFICUPRMEN/", "display_title": "4DNFICUPRMEN.fastq.gz", "md5sum": "9ebc4c82884ceefcd0322eaa539717b1", "file_classification": "raw file", "upload_key": "8d6d4909-fe11-4d60-b561-ab835b4c1764/4DNFICUPRMEN.fastq.gz", "accession": "4DNFICUPRMEN", "uuid": "8d6d4909-fe11-4d60-b561-ab835b4c1764", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 269883382, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2193817d-ea93-4858-a391-b5a7587a8752", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5477856, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICUPRMEN/fastqc_report.html", "@id": "/quality-metrics-fastqc/2193817d-ea93-4858-a391-b5a7587a8752/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJDF3BY2/@@download/4DNFIJDF3BY2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/131a829b-20e8-4e29-ae73-2d7d21d49f57/4DNFIJDF3BY2.fastq.gz", "@id": "/files-fastq/4DNFIJDF3BY2/", "display_title": "4DNFIJDF3BY2.fastq.gz", "md5sum": "07ce5a285582537885e459cf425df806", "file_classification": "raw file", "upload_key": "131a829b-20e8-4e29-ae73-2d7d21d49f57/4DNFIJDF3BY2.fastq.gz", "accession": "4DNFIJDF3BY2", "uuid": "131a829b-20e8-4e29-ae73-2d7d21d49f57", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 37859358, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f3cc1389-b1a8-4335-8eae-b9b1feabb9f8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 819860, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJDF3BY2/fastqc_report.html", "@id": "/quality-metrics-fastqc/f3cc1389-b1a8-4335-8eae-b9b1feabb9f8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2IU8X9C/@@download/4DNFI2IU8X9C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9b3d3ee5-fe4c-4f7d-b674-5649555ea528/4DNFI2IU8X9C.fastq.gz", "@id": "/files-fastq/4DNFI2IU8X9C/", "display_title": "4DNFI2IU8X9C.fastq.gz", "md5sum": "048271130d611c4424553d37a0c65ebf", "file_classification": "raw file", "upload_key": "9b3d3ee5-fe4c-4f7d-b674-5649555ea528/4DNFI2IU8X9C.fastq.gz", "accession": "4DNFI2IU8X9C", "uuid": "9b3d3ee5-fe4c-4f7d-b674-5649555ea528", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 40988911, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6e55d21f-d6c2-4307-9384-0b55cd76bdcc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 891414, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2IU8X9C/fastqc_report.html", "@id": "/quality-metrics-fastqc/6e55d21f-d6c2-4307-9384-0b55cd76bdcc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI69YPRV2/@@download/4DNFI69YPRV2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c2599335-804f-4d2d-a56e-7177054b3009/4DNFI69YPRV2.fastq.gz", "@id": "/files-fastq/4DNFI69YPRV2/", "display_title": "4DNFI69YPRV2.fastq.gz", "md5sum": "cea456af20b64fc6926560bdc33a8d1f", "file_classification": "raw file", "upload_key": "c2599335-804f-4d2d-a56e-7177054b3009/4DNFI69YPRV2.fastq.gz", "accession": "4DNFI69YPRV2", "uuid": "c2599335-804f-4d2d-a56e-7177054b3009", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 113696048, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "262ba21f-d987-4f12-857f-a340e7ea07a9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2531072, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI69YPRV2/fastqc_report.html", "@id": "/quality-metrics-fastqc/262ba21f-d987-4f12-857f-a340e7ea07a9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILF5Z5AR/@@download/4DNFILF5Z5AR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/07fa8df2-51be-4d28-ae5d-8fcb9332cc3b/4DNFILF5Z5AR.fastq.gz", "@id": "/files-fastq/4DNFILF5Z5AR/", "display_title": "4DNFILF5Z5AR.fastq.gz", "md5sum": "105fee31c30e327b075fe849d440b7ab", "file_classification": "raw file", "upload_key": "07fa8df2-51be-4d28-ae5d-8fcb9332cc3b/4DNFILF5Z5AR.fastq.gz", "accession": "4DNFILF5Z5AR", "uuid": "07fa8df2-51be-4d28-ae5d-8fcb9332cc3b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 145043494, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "16a4f05e-3daa-452f-a5ed-0f834111161d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3193773, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILF5Z5AR/fastqc_report.html", "@id": "/quality-metrics-fastqc/16a4f05e-3daa-452f-a5ed-0f834111161d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIH9TI27M/@@download/4DNFIH9TI27M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/80420954-6c71-4ba2-bf4f-12b9d59b4845/4DNFIH9TI27M.fastq.gz", "@id": "/files-fastq/4DNFIH9TI27M/", "display_title": "4DNFIH9TI27M.fastq.gz", "md5sum": "aba4b44252d54ea8a6060e50910a300c", "file_classification": "raw file", "upload_key": "80420954-6c71-4ba2-bf4f-12b9d59b4845/4DNFIH9TI27M.fastq.gz", "accession": "4DNFIH9TI27M", "uuid": "80420954-6c71-4ba2-bf4f-12b9d59b4845", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 102985184, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "070e93a0-1bc0-497a-8207-90163e708cd8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2287176, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIH9TI27M/fastqc_report.html", "@id": "/quality-metrics-fastqc/070e93a0-1bc0-497a-8207-90163e708cd8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZAJFPJP/@@download/4DNFIZAJFPJP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0556d33a-a055-4b5f-b675-37f74459b2ec/4DNFIZAJFPJP.fastq.gz", "@id": "/files-fastq/4DNFIZAJFPJP/", "display_title": "4DNFIZAJFPJP.fastq.gz", "md5sum": "2bfd93111312e3a446a71b1809e242d4", "file_classification": "raw file", "upload_key": "0556d33a-a055-4b5f-b675-37f74459b2ec/4DNFIZAJFPJP.fastq.gz", "accession": "4DNFIZAJFPJP", "uuid": "0556d33a-a055-4b5f-b675-37f74459b2ec", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 99097632, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "69b49570-a558-47b8-932f-3c0b13af43e8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2184937, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZAJFPJP/fastqc_report.html", "@id": "/quality-metrics-fastqc/69b49570-a558-47b8-932f-3c0b13af43e8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5UVKZKN/@@download/4DNFI5UVKZKN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/21ff9078-7f53-4741-b483-6e9edaaf9d50/4DNFI5UVKZKN.fastq.gz", "@id": "/files-fastq/4DNFI5UVKZKN/", "display_title": "4DNFI5UVKZKN.fastq.gz", "md5sum": "b4eabcb4a2e623196bf6bfa07bfe52ae", "file_classification": "raw file", "upload_key": "21ff9078-7f53-4741-b483-6e9edaaf9d50/4DNFI5UVKZKN.fastq.gz", "accession": "4DNFI5UVKZKN", "uuid": "21ff9078-7f53-4741-b483-6e9edaaf9d50", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 59929878, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0182edbf-787a-4b89-a29e-11c73db613bc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1318785, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5UVKZKN/fastqc_report.html", "@id": "/quality-metrics-fastqc/0182edbf-787a-4b89-a29e-11c73db613bc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFID774YO8/@@download/4DNFID774YO8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3d9a4458-5082-4183-864c-4107a29caaa0/4DNFID774YO8.fastq.gz", "@id": "/files-fastq/4DNFID774YO8/", "display_title": "4DNFID774YO8.fastq.gz", "md5sum": "7bcc847423a1b6fb81139385ca274498", "file_classification": "raw file", "upload_key": "3d9a4458-5082-4183-864c-4107a29caaa0/4DNFID774YO8.fastq.gz", "accession": "4DNFID774YO8", "uuid": "3d9a4458-5082-4183-864c-4107a29caaa0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 281632823, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9bf1a30a-72ce-4b1b-be33-bc8945799059", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5762388, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFID774YO8/fastqc_report.html", "@id": "/quality-metrics-fastqc/9bf1a30a-72ce-4b1b-be33-bc8945799059/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMCD7PU9/@@download/4DNFIMCD7PU9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/62a10980-f7e3-4eb2-8884-d9a5cb3cd76f/4DNFIMCD7PU9.fastq.gz", "@id": "/files-fastq/4DNFIMCD7PU9/", "display_title": "4DNFIMCD7PU9.fastq.gz", "md5sum": "713d78e7ceeb225b214b06441bd896c3", "file_classification": "raw file", "upload_key": "62a10980-f7e3-4eb2-8884-d9a5cb3cd76f/4DNFIMCD7PU9.fastq.gz", "accession": "4DNFIMCD7PU9", "uuid": "62a10980-f7e3-4eb2-8884-d9a5cb3cd76f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 301208524, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4e803db3-9228-4715-aee8-b95e8435b315", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6140389, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMCD7PU9/fastqc_report.html", "@id": "/quality-metrics-fastqc/4e803db3-9228-4715-aee8-b95e8435b315/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIV2QPB5H/@@download/4DNFIV2QPB5H.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fea9c33d-9ac5-4659-8f55-e1a485a17b20/4DNFIV2QPB5H.fastq.gz", "@id": "/files-fastq/4DNFIV2QPB5H/", "display_title": "4DNFIV2QPB5H.fastq.gz", "md5sum": "90b48cb88946694b5ea4468898e4a176", "file_classification": "raw file", "upload_key": "fea9c33d-9ac5-4659-8f55-e1a485a17b20/4DNFIV2QPB5H.fastq.gz", "accession": "4DNFIV2QPB5H", "uuid": "fea9c33d-9ac5-4659-8f55-e1a485a17b20", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 176084234, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a02ae161-21f4-4121-a3ca-6513764eaee1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3613168, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIV2QPB5H/fastqc_report.html", "@id": "/quality-metrics-fastqc/a02ae161-21f4-4121-a3ca-6513764eaee1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINKSTBYK/@@download/4DNFINKSTBYK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9fa30c92-5c9a-4b5a-bad7-93b893db1655/4DNFINKSTBYK.fastq.gz", "@id": "/files-fastq/4DNFINKSTBYK/", "display_title": "4DNFINKSTBYK.fastq.gz", "md5sum": "214e1dd13460632bb473303d72aec85a", "file_classification": "raw file", "upload_key": "9fa30c92-5c9a-4b5a-bad7-93b893db1655/4DNFINKSTBYK.fastq.gz", "accession": "4DNFINKSTBYK", "uuid": "9fa30c92-5c9a-4b5a-bad7-93b893db1655", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 274007939, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "11479828-6000-4273-98ac-906229017bb6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5650325, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINKSTBYK/fastqc_report.html", "@id": "/quality-metrics-fastqc/11479828-6000-4273-98ac-906229017bb6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIABFXOXR/@@download/4DNFIABFXOXR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f7e2d7a5-fbb3-492a-8066-1b5901c2a9f8/4DNFIABFXOXR.fastq.gz", "@id": "/files-fastq/4DNFIABFXOXR/", "display_title": "4DNFIABFXOXR.fastq.gz", "md5sum": "05b09e996f7fe6231876edef37097935", "file_classification": "raw file", "upload_key": "f7e2d7a5-fbb3-492a-8066-1b5901c2a9f8/4DNFIABFXOXR.fastq.gz", "accession": "4DNFIABFXOXR", "uuid": "f7e2d7a5-fbb3-492a-8066-1b5901c2a9f8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 247335015, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e4690305-8642-4887-af39-2fa1866dcd23", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5059224, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIABFXOXR/fastqc_report.html", "@id": "/quality-metrics-fastqc/e4690305-8642-4887-af39-2fa1866dcd23/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGXX2VAN/@@download/4DNFIGXX2VAN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c726f24d-bcaf-4ed6-998f-e7ba84c08f56/4DNFIGXX2VAN.fastq.gz", "@id": "/files-fastq/4DNFIGXX2VAN/", "display_title": "4DNFIGXX2VAN.fastq.gz", "md5sum": "cd57bc8d3221df99505e03294edb2a6d", "file_classification": "raw file", "upload_key": "c726f24d-bcaf-4ed6-998f-e7ba84c08f56/4DNFIGXX2VAN.fastq.gz", "accession": "4DNFIGXX2VAN", "uuid": "c726f24d-bcaf-4ed6-998f-e7ba84c08f56", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 147442317, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "abe86a6e-155f-48bd-8ff2-7d4bdecc6c68", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2996098, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGXX2VAN/fastqc_report.html", "@id": "/quality-metrics-fastqc/abe86a6e-155f-48bd-8ff2-7d4bdecc6c68/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRPNGDZN/@@download/4DNFIRPNGDZN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/921f64a6-977b-46e4-a23c-19ddf3aa3b72/4DNFIRPNGDZN.fastq.gz", "@id": "/files-fastq/4DNFIRPNGDZN/", "display_title": "4DNFIRPNGDZN.fastq.gz", "md5sum": "f0367f0e7924bfc194ee4f18b9293453", "file_classification": "raw file", "upload_key": "921f64a6-977b-46e4-a23c-19ddf3aa3b72/4DNFIRPNGDZN.fastq.gz", "accession": "4DNFIRPNGDZN", "uuid": "921f64a6-977b-46e4-a23c-19ddf3aa3b72", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 312736361, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d74bdc2d-4554-4169-8f10-930d757d65a8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6465672, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRPNGDZN/fastqc_report.html", "@id": "/quality-metrics-fastqc/d74bdc2d-4554-4169-8f10-930d757d65a8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISNQ7A8D/@@download/4DNFISNQ7A8D.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/437190fd-35e7-4941-be40-c8879ee3b62b/4DNFISNQ7A8D.fastq.gz", "@id": "/files-fastq/4DNFISNQ7A8D/", "display_title": "4DNFISNQ7A8D.fastq.gz", "md5sum": "6803668885c84aefa6954e155941d238", "file_classification": "raw file", "upload_key": "437190fd-35e7-4941-be40-c8879ee3b62b/4DNFISNQ7A8D.fastq.gz", "accession": "4DNFISNQ7A8D", "uuid": "437190fd-35e7-4941-be40-c8879ee3b62b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 238410090, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eccdb802-0bdf-4a3d-9d19-2b13f62884b5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4907254, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISNQ7A8D/fastqc_report.html", "@id": "/quality-metrics-fastqc/eccdb802-0bdf-4a3d-9d19-2b13f62884b5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGFLHMFC/@@download/4DNFIGFLHMFC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5ae3f129-b60b-4100-be73-3eee56ec27cc/4DNFIGFLHMFC.fastq.gz", "@id": "/files-fastq/4DNFIGFLHMFC/", "display_title": "4DNFIGFLHMFC.fastq.gz", "md5sum": "55226d9e7d285ea0e53c5ff6c91c8439", "file_classification": "raw file", "upload_key": "5ae3f129-b60b-4100-be73-3eee56ec27cc/4DNFIGFLHMFC.fastq.gz", "accession": "4DNFIGFLHMFC", "uuid": "5ae3f129-b60b-4100-be73-3eee56ec27cc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 245986950, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "847c3a47-d8a8-48b6-80aa-8ca4d295b172", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4978689, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGFLHMFC/fastqc_report.html", "@id": "/quality-metrics-fastqc/847c3a47-d8a8-48b6-80aa-8ca4d295b172/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDM6S7RN/@@download/4DNFIDM6S7RN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/48885c8a-8cfe-4c65-b787-e9f43652adbd/4DNFIDM6S7RN.fastq.gz", "@id": "/files-fastq/4DNFIDM6S7RN/", "display_title": "4DNFIDM6S7RN.fastq.gz", "md5sum": "c9e24ef93ba709117e3dc871f9c36d4d", "file_classification": "raw file", "upload_key": "48885c8a-8cfe-4c65-b787-e9f43652adbd/4DNFIDM6S7RN.fastq.gz", "accession": "4DNFIDM6S7RN", "uuid": "48885c8a-8cfe-4c65-b787-e9f43652adbd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 281425346, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c1a74153-855f-46b7-a8de-f2ae45424b92", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5815048, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDM6S7RN/fastqc_report.html", "@id": "/quality-metrics-fastqc/c1a74153-855f-46b7-a8de-f2ae45424b92/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOQ2M3AA/@@download/4DNFIOQ2M3AA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1702ce29-daf3-41a3-bba0-3490a410651b/4DNFIOQ2M3AA.fastq.gz", "@id": "/files-fastq/4DNFIOQ2M3AA/", "display_title": "4DNFIOQ2M3AA.fastq.gz", "md5sum": "58d447ff848adf848080bd3bfe3e5fcc", "file_classification": "raw file", "upload_key": "1702ce29-daf3-41a3-bba0-3490a410651b/4DNFIOQ2M3AA.fastq.gz", "accession": "4DNFIOQ2M3AA", "uuid": "1702ce29-daf3-41a3-bba0-3490a410651b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 328944675, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f5108f13-58a0-45c9-b302-ff29cbb3fa3e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6731874, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOQ2M3AA/fastqc_report.html", "@id": "/quality-metrics-fastqc/f5108f13-58a0-45c9-b302-ff29cbb3fa3e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIT5FHQMY/@@download/4DNFIT5FHQMY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/72211b32-0ba6-48f2-97f1-5b083601a922/4DNFIT5FHQMY.fastq.gz", "@id": "/files-fastq/4DNFIT5FHQMY/", "display_title": "4DNFIT5FHQMY.fastq.gz", "md5sum": "bcf3466053300097ebf672ac65d58a19", "file_classification": "raw file", "upload_key": "72211b32-0ba6-48f2-97f1-5b083601a922/4DNFIT5FHQMY.fastq.gz", "accession": "4DNFIT5FHQMY", "uuid": "72211b32-0ba6-48f2-97f1-5b083601a922", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 276950317, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fc318457-0e98-4db2-a2c6-fe15845db435", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5693655, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT5FHQMY/fastqc_report.html", "@id": "/quality-metrics-fastqc/fc318457-0e98-4db2-a2c6-fe15845db435/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZBPPXCZ/@@download/4DNFIZBPPXCZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c8813089-93ac-4e8e-80b0-70aa8e5413b2/4DNFIZBPPXCZ.fastq.gz", "@id": "/files-fastq/4DNFIZBPPXCZ/", "display_title": "4DNFIZBPPXCZ.fastq.gz", "md5sum": "19b0becf1cf798d110febd367cbbb456", "file_classification": "raw file", "upload_key": "c8813089-93ac-4e8e-80b0-70aa8e5413b2/4DNFIZBPPXCZ.fastq.gz", "accession": "4DNFIZBPPXCZ", "uuid": "c8813089-93ac-4e8e-80b0-70aa8e5413b2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 166778005, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "138199b9-0a1e-4232-8312-01fde09276ff", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3324211, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZBPPXCZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/138199b9-0a1e-4232-8312-01fde09276ff/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2U5887F/@@download/4DNFI2U5887F.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7a9e9004-c131-4a9e-9771-71b3390e9942/4DNFI2U5887F.fastq.gz", "@id": "/files-fastq/4DNFI2U5887F/", "display_title": "4DNFI2U5887F.fastq.gz", "md5sum": "f0fe7aa7eafaca92b99999bdd562df7e", "file_classification": "raw file", "upload_key": "7a9e9004-c131-4a9e-9771-71b3390e9942/4DNFI2U5887F.fastq.gz", "accession": "4DNFI2U5887F", "uuid": "7a9e9004-c131-4a9e-9771-71b3390e9942", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235320636, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d58e9eea-d029-467e-b0e8-dab7646fec2c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4709292, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2U5887F/fastqc_report.html", "@id": "/quality-metrics-fastqc/d58e9eea-d029-467e-b0e8-dab7646fec2c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI12THKAM/@@download/4DNFI12THKAM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9e3baa96-d0e8-49e6-9fce-25a1d24fc11b/4DNFI12THKAM.fastq.gz", "@id": "/files-fastq/4DNFI12THKAM/", "display_title": "4DNFI12THKAM.fastq.gz", "md5sum": "d6d177745a1a44067c69473b879efeff", "file_classification": "raw file", "upload_key": "9e3baa96-d0e8-49e6-9fce-25a1d24fc11b/4DNFI12THKAM.fastq.gz", "accession": "4DNFI12THKAM", "uuid": "9e3baa96-d0e8-49e6-9fce-25a1d24fc11b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 221283597, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bf6b1ebb-a3f2-45e4-ae4a-13604df06413", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4474251, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI12THKAM/fastqc_report.html", "@id": "/quality-metrics-fastqc/bf6b1ebb-a3f2-45e4-ae4a-13604df06413/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITYG4M3J/@@download/4DNFITYG4M3J.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c098ded-85ce-4fe2-9c9e-5f2b73b41d0e/4DNFITYG4M3J.fastq.gz", "@id": "/files-fastq/4DNFITYG4M3J/", "display_title": "4DNFITYG4M3J.fastq.gz", "md5sum": "51045289e9535ea4fd6cc2b8acb5c08f", "file_classification": "raw file", "upload_key": "0c098ded-85ce-4fe2-9c9e-5f2b73b41d0e/4DNFITYG4M3J.fastq.gz", "accession": "4DNFITYG4M3J", "uuid": "0c098ded-85ce-4fe2-9c9e-5f2b73b41d0e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 182468440, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5135c4ef-cd07-4246-85b1-e7bd10f3744f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3742125, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITYG4M3J/fastqc_report.html", "@id": "/quality-metrics-fastqc/5135c4ef-cd07-4246-85b1-e7bd10f3744f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVAGJJ1C/@@download/4DNFIVAGJJ1C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a5b7a727-56ce-480c-9032-0574cdbac2c0/4DNFIVAGJJ1C.fastq.gz", "@id": "/files-fastq/4DNFIVAGJJ1C/", "display_title": "4DNFIVAGJJ1C.fastq.gz", "md5sum": "4c9f36b6c03df8bf9850f6e4a6c0aef4", "file_classification": "raw file", "upload_key": "a5b7a727-56ce-480c-9032-0574cdbac2c0/4DNFIVAGJJ1C.fastq.gz", "accession": "4DNFIVAGJJ1C", "uuid": "a5b7a727-56ce-480c-9032-0574cdbac2c0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 220771592, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "931c8186-ec3e-4b2e-aff5-a4a76282ea60", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4504801, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVAGJJ1C/fastqc_report.html", "@id": "/quality-metrics-fastqc/931c8186-ec3e-4b2e-aff5-a4a76282ea60/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2NHQCF7/@@download/4DNFI2NHQCF7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b9cfca4a-5d6c-42f8-a45c-76c640178d2d/4DNFI2NHQCF7.fastq.gz", "@id": "/files-fastq/4DNFI2NHQCF7/", "display_title": "4DNFI2NHQCF7.fastq.gz", "md5sum": "717219737d3fee9e2848d52872caf364", "file_classification": "raw file", "upload_key": "b9cfca4a-5d6c-42f8-a45c-76c640178d2d/4DNFI2NHQCF7.fastq.gz", "accession": "4DNFI2NHQCF7", "uuid": "b9cfca4a-5d6c-42f8-a45c-76c640178d2d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264868222, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fd107179-5792-4632-97c7-cf68a2be6b72", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5336118, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2NHQCF7/fastqc_report.html", "@id": "/quality-metrics-fastqc/fd107179-5792-4632-97c7-cf68a2be6b72/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWNS2RJS/@@download/4DNFIWNS2RJS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/33cede5b-bb92-4459-b96f-ddcea88deb4d/4DNFIWNS2RJS.fastq.gz", "@id": "/files-fastq/4DNFIWNS2RJS/", "display_title": "4DNFIWNS2RJS.fastq.gz", "md5sum": "baa448279f57f69dbd9eb96bc5d34c1d", "file_classification": "raw file", "upload_key": "33cede5b-bb92-4459-b96f-ddcea88deb4d/4DNFIWNS2RJS.fastq.gz", "accession": "4DNFIWNS2RJS", "uuid": "33cede5b-bb92-4459-b96f-ddcea88deb4d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 262781659, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d4a39235-23c6-48f8-ba9c-3a52e6caa223", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5409022, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWNS2RJS/fastqc_report.html", "@id": "/quality-metrics-fastqc/d4a39235-23c6-48f8-ba9c-3a52e6caa223/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYMWNB9O/@@download/4DNFIYMWNB9O.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8a4bedf7-70ec-43ca-a19b-6c844683ed00/4DNFIYMWNB9O.fastq.gz", "@id": "/files-fastq/4DNFIYMWNB9O/", "display_title": "4DNFIYMWNB9O.fastq.gz", "md5sum": "964ce51e86d01ea8dae08c5b306c0c70", "file_classification": "raw file", "upload_key": "8a4bedf7-70ec-43ca-a19b-6c844683ed00/4DNFIYMWNB9O.fastq.gz", "accession": "4DNFIYMWNB9O", "uuid": "8a4bedf7-70ec-43ca-a19b-6c844683ed00", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 248998662, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b82bb611-b7a5-4b35-ad61-7de929a4791a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5133370, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYMWNB9O/fastqc_report.html", "@id": "/quality-metrics-fastqc/b82bb611-b7a5-4b35-ad61-7de929a4791a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2KXB842/@@download/4DNFI2KXB842.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6767c0b0-1f26-4a99-8499-3dded4c7f004/4DNFI2KXB842.fastq.gz", "@id": "/files-fastq/4DNFI2KXB842/", "display_title": "4DNFI2KXB842.fastq.gz", "md5sum": "efbb7c20888a8eb65320b04593e212d7", "file_classification": "raw file", "upload_key": "6767c0b0-1f26-4a99-8499-3dded4c7f004/4DNFI2KXB842.fastq.gz", "accession": "4DNFI2KXB842", "uuid": "6767c0b0-1f26-4a99-8499-3dded4c7f004", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 241787428, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2b5e94c9-6f47-49ea-9a4d-1412a55c608f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4964208, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2KXB842/fastqc_report.html", "@id": "/quality-metrics-fastqc/2b5e94c9-6f47-49ea-9a4d-1412a55c608f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9EEL1LU/@@download/4DNFI9EEL1LU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a2af8bdf-c2e3-484c-8865-b3e35759eb1a/4DNFI9EEL1LU.fastq.gz", "@id": "/files-fastq/4DNFI9EEL1LU/", "display_title": "4DNFI9EEL1LU.fastq.gz", "md5sum": "14475e4b8d432313d6d6d7bc3f01b8d8", "file_classification": "raw file", "upload_key": "a2af8bdf-c2e3-484c-8865-b3e35759eb1a/4DNFI9EEL1LU.fastq.gz", "accession": "4DNFI9EEL1LU", "uuid": "a2af8bdf-c2e3-484c-8865-b3e35759eb1a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 317420438, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d21626c1-226e-4166-90f6-34e469defde7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6565409, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9EEL1LU/fastqc_report.html", "@id": "/quality-metrics-fastqc/d21626c1-226e-4166-90f6-34e469defde7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5YT8AKE/@@download/4DNFI5YT8AKE.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bad33249-4a60-4db9-839a-f7cfe786a1ce/4DNFI5YT8AKE.fastq.gz", "@id": "/files-fastq/4DNFI5YT8AKE/", "display_title": "4DNFI5YT8AKE.fastq.gz", "md5sum": "ea1bf1cdb5de5f3d37b2de5a4a821fb8", "file_classification": "raw file", "upload_key": "bad33249-4a60-4db9-839a-f7cfe786a1ce/4DNFI5YT8AKE.fastq.gz", "accession": "4DNFI5YT8AKE", "uuid": "bad33249-4a60-4db9-839a-f7cfe786a1ce", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 228190123, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9c4883ad-84cf-4397-b7e9-3e6c9a303c8f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4650575, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5YT8AKE/fastqc_report.html", "@id": "/quality-metrics-fastqc/9c4883ad-84cf-4397-b7e9-3e6c9a303c8f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7VXYFC1/@@download/4DNFI7VXYFC1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2108b5b4-0b75-4ae8-a4fc-39bac4539c7a/4DNFI7VXYFC1.fastq.gz", "@id": "/files-fastq/4DNFI7VXYFC1/", "display_title": "4DNFI7VXYFC1.fastq.gz", "md5sum": "8e319b02bc3035f2bc1dffd88b3836cc", "file_classification": "raw file", "upload_key": "2108b5b4-0b75-4ae8-a4fc-39bac4539c7a/4DNFI7VXYFC1.fastq.gz", "accession": "4DNFI7VXYFC1", "uuid": "2108b5b4-0b75-4ae8-a4fc-39bac4539c7a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 208605193, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "39bf823c-e7ce-4aef-b079-324d9b68be84", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4217233, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7VXYFC1/fastqc_report.html", "@id": "/quality-metrics-fastqc/39bf823c-e7ce-4aef-b079-324d9b68be84/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITOO7KYQ/@@download/4DNFITOO7KYQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/236b00a1-c0a7-45f6-8186-e31b915fc61a/4DNFITOO7KYQ.fastq.gz", "@id": "/files-fastq/4DNFITOO7KYQ/", "display_title": "4DNFITOO7KYQ.fastq.gz", "md5sum": "10d6ba2eee56abe9d7cb911ae4a130f6", "file_classification": "raw file", "upload_key": "236b00a1-c0a7-45f6-8186-e31b915fc61a/4DNFITOO7KYQ.fastq.gz", "accession": "4DNFITOO7KYQ", "uuid": "236b00a1-c0a7-45f6-8186-e31b915fc61a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 274788351, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "aff402dc-9ea4-4e74-b81f-c41e6a822cf4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5601755, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITOO7KYQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/aff402dc-9ea4-4e74-b81f-c41e6a822cf4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRDPLVGP/@@download/4DNFIRDPLVGP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bb907184-c4e2-4107-8135-493c9d9c8dbc/4DNFIRDPLVGP.fastq.gz", "@id": "/files-fastq/4DNFIRDPLVGP/", "display_title": "4DNFIRDPLVGP.fastq.gz", "md5sum": "327136afa6c77d750e9b65b375cbdffe", "file_classification": "raw file", "upload_key": "bb907184-c4e2-4107-8135-493c9d9c8dbc/4DNFIRDPLVGP.fastq.gz", "accession": "4DNFIRDPLVGP", "uuid": "bb907184-c4e2-4107-8135-493c9d9c8dbc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 227999142, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c23b4551-c98f-4c55-8973-6976aba4278e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4677965, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRDPLVGP/fastqc_report.html", "@id": "/quality-metrics-fastqc/c23b4551-c98f-4c55-8973-6976aba4278e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIV33SBX2/@@download/4DNFIV33SBX2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2bb2d033-7d9a-4c42-8d8e-b5da1600ca33/4DNFIV33SBX2.fastq.gz", "@id": "/files-fastq/4DNFIV33SBX2/", "display_title": "4DNFIV33SBX2.fastq.gz", "md5sum": "f34d88b4515308a828deadf80016d0b2", "file_classification": "raw file", "upload_key": "2bb2d033-7d9a-4c42-8d8e-b5da1600ca33/4DNFIV33SBX2.fastq.gz", "accession": "4DNFIV33SBX2", "uuid": "2bb2d033-7d9a-4c42-8d8e-b5da1600ca33", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 255143396, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c516d5b6-2211-42ba-9e6c-70a4e512db97", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5107337, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIV33SBX2/fastqc_report.html", "@id": "/quality-metrics-fastqc/c516d5b6-2211-42ba-9e6c-70a4e512db97/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFRI1Z4O/@@download/4DNFIFRI1Z4O.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a94508c4-b71c-4aa2-988a-7273520f6239/4DNFIFRI1Z4O.fastq.gz", "@id": "/files-fastq/4DNFIFRI1Z4O/", "display_title": "4DNFIFRI1Z4O.fastq.gz", "md5sum": "bbe08aef074c11c29a75c62da3c8b8b2", "file_classification": "raw file", "upload_key": "a94508c4-b71c-4aa2-988a-7273520f6239/4DNFIFRI1Z4O.fastq.gz", "accession": "4DNFIFRI1Z4O", "uuid": "a94508c4-b71c-4aa2-988a-7273520f6239", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 186360107, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a2fe451b-ec8f-49f0-8d37-d3c116cf627e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3709232, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFRI1Z4O/fastqc_report.html", "@id": "/quality-metrics-fastqc/a2fe451b-ec8f-49f0-8d37-d3c116cf627e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5GL6JA3/@@download/4DNFI5GL6JA3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/01a636ae-5f78-4adf-94d7-a902c5c320a1/4DNFI5GL6JA3.fastq.gz", "@id": "/files-fastq/4DNFI5GL6JA3/", "display_title": "4DNFI5GL6JA3.fastq.gz", "md5sum": "7488dfb1308fc3ea92f0a09142be695e", "file_classification": "raw file", "upload_key": "01a636ae-5f78-4adf-94d7-a902c5c320a1/4DNFI5GL6JA3.fastq.gz", "accession": "4DNFI5GL6JA3", "uuid": "01a636ae-5f78-4adf-94d7-a902c5c320a1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 243112290, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a84fd6b2-0b3a-4d03-af9e-669cf0e8e50c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4916977, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5GL6JA3/fastqc_report.html", "@id": "/quality-metrics-fastqc/a84fd6b2-0b3a-4d03-af9e-669cf0e8e50c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1E33M2W/@@download/4DNFI1E33M2W.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/444c7475-7a1a-419a-8f37-672c1c3f2f1a/4DNFI1E33M2W.fastq.gz", "@id": "/files-fastq/4DNFI1E33M2W/", "display_title": "4DNFI1E33M2W.fastq.gz", "md5sum": "ff8d587ae6d5e03cb833e2f4c568e191", "file_classification": "raw file", "upload_key": "444c7475-7a1a-419a-8f37-672c1c3f2f1a/4DNFI1E33M2W.fastq.gz", "accession": "4DNFI1E33M2W", "uuid": "444c7475-7a1a-419a-8f37-672c1c3f2f1a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230172814, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cf908d5e-32b7-407a-bdc0-b4714c46909a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4627803, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1E33M2W/fastqc_report.html", "@id": "/quality-metrics-fastqc/cf908d5e-32b7-407a-bdc0-b4714c46909a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISNGO1UR/@@download/4DNFISNGO1UR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0443a187-9b26-4539-899c-2a5c35c2a243/4DNFISNGO1UR.fastq.gz", "@id": "/files-fastq/4DNFISNGO1UR/", "display_title": "4DNFISNGO1UR.fastq.gz", "md5sum": "697196e9220b982a3f4fcf28127e49aa", "file_classification": "raw file", "upload_key": "0443a187-9b26-4539-899c-2a5c35c2a243/4DNFISNGO1UR.fastq.gz", "accession": "4DNFISNGO1UR", "uuid": "0443a187-9b26-4539-899c-2a5c35c2a243", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 210433284, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0bc97a73-fe34-4e98-9c4c-d8bd4d13e3dd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4208050, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISNGO1UR/fastqc_report.html", "@id": "/quality-metrics-fastqc/0bc97a73-fe34-4e98-9c4c-d8bd4d13e3dd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIICN43JO/@@download/4DNFIICN43JO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0ebb8a52-029f-4559-a32e-48c31cf2aa3a/4DNFIICN43JO.fastq.gz", "@id": "/files-fastq/4DNFIICN43JO/", "display_title": "4DNFIICN43JO.fastq.gz", "md5sum": "fd436003aea5db1db154897630f1c0e1", "file_classification": "raw file", "upload_key": "0ebb8a52-029f-4559-a32e-48c31cf2aa3a/4DNFIICN43JO.fastq.gz", "accession": "4DNFIICN43JO", "uuid": "0ebb8a52-029f-4559-a32e-48c31cf2aa3a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 109463467, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a9e04b76-dc26-43b2-8ab6-7677a67d42c1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2211648, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIICN43JO/fastqc_report.html", "@id": "/quality-metrics-fastqc/a9e04b76-dc26-43b2-8ab6-7677a67d42c1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIF3HLKW5/@@download/4DNFIF3HLKW5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/41b4cf4f-076f-460d-b30d-c7ec6147b0e9/4DNFIF3HLKW5.fastq.gz", "@id": "/files-fastq/4DNFIF3HLKW5/", "display_title": "4DNFIF3HLKW5.fastq.gz", "md5sum": "85ac42e1097431e4347c281b38e0a991", "file_classification": "raw file", "upload_key": "41b4cf4f-076f-460d-b30d-c7ec6147b0e9/4DNFIF3HLKW5.fastq.gz", "accession": "4DNFIF3HLKW5", "uuid": "41b4cf4f-076f-460d-b30d-c7ec6147b0e9", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 184732872, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "303a10a2-10e0-43a3-9529-8edad39374e5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3751522, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF3HLKW5/fastqc_report.html", "@id": "/quality-metrics-fastqc/303a10a2-10e0-43a3-9529-8edad39374e5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILORG72K/@@download/4DNFILORG72K.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b18dbd14-0b9d-4859-ab89-ad12ba62112a/4DNFILORG72K.fastq.gz", "@id": "/files-fastq/4DNFILORG72K/", "display_title": "4DNFILORG72K.fastq.gz", "md5sum": "80e2272bb9b52c02cf86b9135c51c28f", "file_classification": "raw file", "upload_key": "b18dbd14-0b9d-4859-ab89-ad12ba62112a/4DNFILORG72K.fastq.gz", "accession": "4DNFILORG72K", "uuid": "b18dbd14-0b9d-4859-ab89-ad12ba62112a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 88894551, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e6405341-d26d-42fe-893c-e76d7436a767", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1851416, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILORG72K/fastqc_report.html", "@id": "/quality-metrics-fastqc/e6405341-d26d-42fe-893c-e76d7436a767/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFHKKTRZ/@@download/4DNFIFHKKTRZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ef0a47a8-aecb-4e93-8098-b6bf06df40c4/4DNFIFHKKTRZ.fastq.gz", "@id": "/files-fastq/4DNFIFHKKTRZ/", "display_title": "4DNFIFHKKTRZ.fastq.gz", "md5sum": "845a2314b238de5ec08885769a8e9f1e", "file_classification": "raw file", "upload_key": "ef0a47a8-aecb-4e93-8098-b6bf06df40c4/4DNFIFHKKTRZ.fastq.gz", "accession": "4DNFIFHKKTRZ", "uuid": "ef0a47a8-aecb-4e93-8098-b6bf06df40c4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 206287060, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6f9e5c1e-4823-4d1a-8803-bdc8c3cd629f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4195404, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFHKKTRZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/6f9e5c1e-4823-4d1a-8803-bdc8c3cd629f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7E7A1HQ/@@download/4DNFI7E7A1HQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6279c034-6030-43b5-a906-7679dfdc6e7c/4DNFI7E7A1HQ.fastq.gz", "@id": "/files-fastq/4DNFI7E7A1HQ/", "display_title": "4DNFI7E7A1HQ.fastq.gz", "md5sum": "42585249a7da30c0eb01d43602f1e5ee", "file_classification": "raw file", "upload_key": "6279c034-6030-43b5-a906-7679dfdc6e7c/4DNFI7E7A1HQ.fastq.gz", "accession": "4DNFI7E7A1HQ", "uuid": "6279c034-6030-43b5-a906-7679dfdc6e7c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 212003918, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c398d500-4986-4884-bf97-889e6417d0a0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4323181, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7E7A1HQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/c398d500-4986-4884-bf97-889e6417d0a0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIE36X5J2/@@download/4DNFIE36X5J2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e511ee28-3062-4bc5-ad3b-4f10a4cff623/4DNFIE36X5J2.fastq.gz", "@id": "/files-fastq/4DNFIE36X5J2/", "display_title": "4DNFIE36X5J2.fastq.gz", "md5sum": "4b53ef406750157d17ebe27c34ab4c3a", "file_classification": "raw file", "upload_key": "e511ee28-3062-4bc5-ad3b-4f10a4cff623/4DNFIE36X5J2.fastq.gz", "accession": "4DNFIE36X5J2", "uuid": "e511ee28-3062-4bc5-ad3b-4f10a4cff623", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 211344336, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9737617f-e6c7-466a-90d4-806522e04f3a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4297781, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE36X5J2/fastqc_report.html", "@id": "/quality-metrics-fastqc/9737617f-e6c7-466a-90d4-806522e04f3a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIR1GCTAX/@@download/4DNFIR1GCTAX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e1e61fd7-ee1c-4989-ad98-fae47e2eb89e/4DNFIR1GCTAX.fastq.gz", "@id": "/files-fastq/4DNFIR1GCTAX/", "display_title": "4DNFIR1GCTAX.fastq.gz", "md5sum": "03f326470f1e6de52210bb5815d41922", "file_classification": "raw file", "upload_key": "e1e61fd7-ee1c-4989-ad98-fae47e2eb89e/4DNFIR1GCTAX.fastq.gz", "accession": "4DNFIR1GCTAX", "uuid": "e1e61fd7-ee1c-4989-ad98-fae47e2eb89e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 229057604, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "322c4f00-2682-4f2d-8ee8-3372f98ffca9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4625688, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR1GCTAX/fastqc_report.html", "@id": "/quality-metrics-fastqc/322c4f00-2682-4f2d-8ee8-3372f98ffca9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1VVM2OI/@@download/4DNFI1VVM2OI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c26a1c55-cb74-4de3-871a-ad59a181b31f/4DNFI1VVM2OI.fastq.gz", "@id": "/files-fastq/4DNFI1VVM2OI/", "display_title": "4DNFI1VVM2OI.fastq.gz", "md5sum": "cc93e84d1f5c8b879e5192cc637cc2ea", "file_classification": "raw file", "upload_key": "c26a1c55-cb74-4de3-871a-ad59a181b31f/4DNFI1VVM2OI.fastq.gz", "accession": "4DNFI1VVM2OI", "uuid": "c26a1c55-cb74-4de3-871a-ad59a181b31f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 250175954, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "71150ff2-61cb-4ffb-98f7-f189cfc345de", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5068984, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1VVM2OI/fastqc_report.html", "@id": "/quality-metrics-fastqc/71150ff2-61cb-4ffb-98f7-f189cfc345de/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI8MW6UKN/@@download/4DNFI8MW6UKN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/047f6d1e-5c85-49d7-be71-9b2f1f7d4f47/4DNFI8MW6UKN.fastq.gz", "@id": "/files-fastq/4DNFI8MW6UKN/", "display_title": "4DNFI8MW6UKN.fastq.gz", "md5sum": "c2768a1c0a240da4ba9cd3436a910cc9", "file_classification": "raw file", "upload_key": "047f6d1e-5c85-49d7-be71-9b2f1f7d4f47/4DNFI8MW6UKN.fastq.gz", "accession": "4DNFI8MW6UKN", "uuid": "047f6d1e-5c85-49d7-be71-9b2f1f7d4f47", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 215392800, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5bd80d6c-22e3-495c-b32f-4f8fb7fc5962", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4374485, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8MW6UKN/fastqc_report.html", "@id": "/quality-metrics-fastqc/5bd80d6c-22e3-495c-b32f-4f8fb7fc5962/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI626M1NF/@@download/4DNFI626M1NF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/04f7d384-65cd-4194-85c7-99533915edaf/4DNFI626M1NF.fastq.gz", "@id": "/files-fastq/4DNFI626M1NF/", "display_title": "4DNFI626M1NF.fastq.gz", "md5sum": "28757d8a1db02812e3b01b970eca079c", "file_classification": "raw file", "upload_key": "04f7d384-65cd-4194-85c7-99533915edaf/4DNFI626M1NF.fastq.gz", "accession": "4DNFI626M1NF", "uuid": "04f7d384-65cd-4194-85c7-99533915edaf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 163487642, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a9b7412a-f955-414d-905b-634b51658572", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3292072, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI626M1NF/fastqc_report.html", "@id": "/quality-metrics-fastqc/a9b7412a-f955-414d-905b-634b51658572/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3MD1FOA/@@download/4DNFI3MD1FOA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5a2de56a-ab08-4702-9523-4e5a462b6790/4DNFI3MD1FOA.fastq.gz", "@id": "/files-fastq/4DNFI3MD1FOA/", "display_title": "4DNFI3MD1FOA.fastq.gz", "md5sum": "7ad3f457a73ffdcf00a20ff06c80a97b", "file_classification": "raw file", "upload_key": "5a2de56a-ab08-4702-9523-4e5a462b6790/4DNFI3MD1FOA.fastq.gz", "accession": "4DNFI3MD1FOA", "uuid": "5a2de56a-ab08-4702-9523-4e5a462b6790", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 204035926, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "07cc7002-769e-466a-ac3a-40d132834057", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4140589, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3MD1FOA/fastqc_report.html", "@id": "/quality-metrics-fastqc/07cc7002-769e-466a-ac3a-40d132834057/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIM1W84ZY/@@download/4DNFIM1W84ZY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/41772cd0-480e-4d69-adb7-00f73c6c38fa/4DNFIM1W84ZY.fastq.gz", "@id": "/files-fastq/4DNFIM1W84ZY/", "display_title": "4DNFIM1W84ZY.fastq.gz", "md5sum": "7c077a379514e3ae2f4cbf333baa7068", "file_classification": "raw file", "upload_key": "41772cd0-480e-4d69-adb7-00f73c6c38fa/4DNFIM1W84ZY.fastq.gz", "accession": "4DNFIM1W84ZY", "uuid": "41772cd0-480e-4d69-adb7-00f73c6c38fa", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 220909504, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7721848c-6ea3-49ba-9419-89cddd8ed817", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4500125, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIM1W84ZY/fastqc_report.html", "@id": "/quality-metrics-fastqc/7721848c-6ea3-49ba-9419-89cddd8ed817/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKEA2G41/@@download/4DNFIKEA2G41.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ced202a4-c1cd-4a7a-87e9-cc8a6b85f09a/4DNFIKEA2G41.fastq.gz", "@id": "/files-fastq/4DNFIKEA2G41/", "display_title": "4DNFIKEA2G41.fastq.gz", "md5sum": "7bbe7e0290274396c62b5082ba296a93", "file_classification": "raw file", "upload_key": "ced202a4-c1cd-4a7a-87e9-cc8a6b85f09a/4DNFIKEA2G41.fastq.gz", "accession": "4DNFIKEA2G41", "uuid": "ced202a4-c1cd-4a7a-87e9-cc8a6b85f09a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 210993219, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b2e60273-7a2b-4ecf-9837-0e2c73cb1654", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4292602, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKEA2G41/fastqc_report.html", "@id": "/quality-metrics-fastqc/b2e60273-7a2b-4ecf-9837-0e2c73cb1654/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVS1U9NZ/@@download/4DNFIVS1U9NZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b77998b5-5453-4847-9815-d815bd798415/4DNFIVS1U9NZ.fastq.gz", "@id": "/files-fastq/4DNFIVS1U9NZ/", "display_title": "4DNFIVS1U9NZ.fastq.gz", "md5sum": "182de112fb2e80e8211cafe6476e12aa", "file_classification": "raw file", "upload_key": "b77998b5-5453-4847-9815-d815bd798415/4DNFIVS1U9NZ.fastq.gz", "accession": "4DNFIVS1U9NZ", "uuid": "b77998b5-5453-4847-9815-d815bd798415", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232739674, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d4d7ec54-7d1d-4c2b-a38d-5ad1caa2676a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4621748, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVS1U9NZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/d4d7ec54-7d1d-4c2b-a38d-5ad1caa2676a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISE34Y55/@@download/4DNFISE34Y55.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/09ed0f1d-14b7-408d-9cb6-5fe9b5fedc71/4DNFISE34Y55.fastq.gz", "@id": "/files-fastq/4DNFISE34Y55/", "display_title": "4DNFISE34Y55.fastq.gz", "md5sum": "d793d778e1dd12bd984e61bfaaab6d60", "file_classification": "raw file", "upload_key": "09ed0f1d-14b7-408d-9cb6-5fe9b5fedc71/4DNFISE34Y55.fastq.gz", "accession": "4DNFISE34Y55", "uuid": "09ed0f1d-14b7-408d-9cb6-5fe9b5fedc71", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 191992740, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4cf42c36-3328-4190-94cf-b8199c7e87a7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3800756, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISE34Y55/fastqc_report.html", "@id": "/quality-metrics-fastqc/4cf42c36-3328-4190-94cf-b8199c7e87a7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIO1FP8L4/@@download/4DNFIO1FP8L4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a5111a54-6fd9-4c06-a5c7-e9969190aef0/4DNFIO1FP8L4.fastq.gz", "@id": "/files-fastq/4DNFIO1FP8L4/", "display_title": "4DNFIO1FP8L4.fastq.gz", "md5sum": "3dee0db09e188f10c7dbcb5fcc2d3aeb", "file_classification": "raw file", "upload_key": "a5111a54-6fd9-4c06-a5c7-e9969190aef0/4DNFIO1FP8L4.fastq.gz", "accession": "4DNFIO1FP8L4", "uuid": "a5111a54-6fd9-4c06-a5c7-e9969190aef0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 202564646, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a7650951-3af2-4be3-9d3c-0781eb3d757c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4006558, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIO1FP8L4/fastqc_report.html", "@id": "/quality-metrics-fastqc/a7650951-3af2-4be3-9d3c-0781eb3d757c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIAGCIQRO/@@download/4DNFIAGCIQRO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5015532c-0011-4e26-a028-415025393123/4DNFIAGCIQRO.fastq.gz", "@id": "/files-fastq/4DNFIAGCIQRO/", "display_title": "4DNFIAGCIQRO.fastq.gz", "md5sum": "7d48b165b97c3a2f0beda3df410c27a4", "file_classification": "raw file", "upload_key": "5015532c-0011-4e26-a028-415025393123/4DNFIAGCIQRO.fastq.gz", "accession": "4DNFIAGCIQRO", "uuid": "5015532c-0011-4e26-a028-415025393123", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 201265925, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3477a625-056c-49db-91ee-d12eb1035bdd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3977775, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAGCIQRO/fastqc_report.html", "@id": "/quality-metrics-fastqc/3477a625-056c-49db-91ee-d12eb1035bdd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJ4F9DL7/@@download/4DNFIJ4F9DL7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/30d171f8-ea73-4145-8b65-bb3a689acaff/4DNFIJ4F9DL7.fastq.gz", "@id": "/files-fastq/4DNFIJ4F9DL7/", "display_title": "4DNFIJ4F9DL7.fastq.gz", "md5sum": "e1281b97657baaae40526456eebdf8ff", "file_classification": "raw file", "upload_key": "30d171f8-ea73-4145-8b65-bb3a689acaff/4DNFIJ4F9DL7.fastq.gz", "accession": "4DNFIJ4F9DL7", "uuid": "30d171f8-ea73-4145-8b65-bb3a689acaff", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 188645769, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "75c333ca-f51b-4652-9026-fb53439a2b15", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3749790, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ4F9DL7/fastqc_report.html", "@id": "/quality-metrics-fastqc/75c333ca-f51b-4652-9026-fb53439a2b15/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXG6B4BL/@@download/4DNFIXG6B4BL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6209cdc5-12c1-4373-baf8-f466b27fd31a/4DNFIXG6B4BL.fastq.gz", "@id": "/files-fastq/4DNFIXG6B4BL/", "display_title": "4DNFIXG6B4BL.fastq.gz", "md5sum": "c794eeb64a440930886198092639aacb", "file_classification": "raw file", "upload_key": "6209cdc5-12c1-4373-baf8-f466b27fd31a/4DNFIXG6B4BL.fastq.gz", "accession": "4DNFIXG6B4BL", "uuid": "6209cdc5-12c1-4373-baf8-f466b27fd31a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 92153973, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e715acc4-1c24-408e-a519-f2ea1689c966", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1846768, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXG6B4BL/fastqc_report.html", "@id": "/quality-metrics-fastqc/e715acc4-1c24-408e-a519-f2ea1689c966/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVLXS47A/@@download/4DNFIVLXS47A.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1c09cdbc-c350-4172-89f4-44ddca358de1/4DNFIVLXS47A.fastq.gz", "@id": "/files-fastq/4DNFIVLXS47A/", "display_title": "4DNFIVLXS47A.fastq.gz", "md5sum": "37a2fb205a0d402cf7b72e0ea9cce465", "file_classification": "raw file", "upload_key": "1c09cdbc-c350-4172-89f4-44ddca358de1/4DNFIVLXS47A.fastq.gz", "accession": "4DNFIVLXS47A", "uuid": "1c09cdbc-c350-4172-89f4-44ddca358de1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232177978, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b9289366-3d08-4f4f-9e7e-ac9c2f1948a6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4691306, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVLXS47A/fastqc_report.html", "@id": "/quality-metrics-fastqc/b9289366-3d08-4f4f-9e7e-ac9c2f1948a6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVCJ81CW/@@download/4DNFIVCJ81CW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e9ca296b-d54e-46d5-bc48-9fb73a2c7f2f/4DNFIVCJ81CW.fastq.gz", "@id": "/files-fastq/4DNFIVCJ81CW/", "display_title": "4DNFIVCJ81CW.fastq.gz", "md5sum": "9da31352e16e37a522eea3148149014e", "file_classification": "raw file", "upload_key": "e9ca296b-d54e-46d5-bc48-9fb73a2c7f2f/4DNFIVCJ81CW.fastq.gz", "accession": "4DNFIVCJ81CW", "uuid": "e9ca296b-d54e-46d5-bc48-9fb73a2c7f2f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 164800644, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "05306697-6bdd-4e36-889b-68a5dd333c50", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3268136, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVCJ81CW/fastqc_report.html", "@id": "/quality-metrics-fastqc/05306697-6bdd-4e36-889b-68a5dd333c50/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMSXSF6M/@@download/4DNFIMSXSF6M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/28b03c07-0ded-4a11-b75e-d2c0afc57532/4DNFIMSXSF6M.fastq.gz", "@id": "/files-fastq/4DNFIMSXSF6M/", "display_title": "4DNFIMSXSF6M.fastq.gz", "md5sum": "da5e2fd6a0bd0a0c7e9360b638bcd4f5", "file_classification": "raw file", "upload_key": "28b03c07-0ded-4a11-b75e-d2c0afc57532/4DNFIMSXSF6M.fastq.gz", "accession": "4DNFIMSXSF6M", "uuid": "28b03c07-0ded-4a11-b75e-d2c0afc57532", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 222988273, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6af92168-d74d-4564-97af-9cab4d2039d3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4543870, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMSXSF6M/fastqc_report.html", "@id": "/quality-metrics-fastqc/6af92168-d74d-4564-97af-9cab4d2039d3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIM5JM8B1/@@download/4DNFIM5JM8B1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f9fa1ef3-0bb0-4f89-ac1a-dba619a2f551/4DNFIM5JM8B1.fastq.gz", "@id": "/files-fastq/4DNFIM5JM8B1/", "display_title": "4DNFIM5JM8B1.fastq.gz", "md5sum": "5d88b013f093c048a861f5b35e176a43", "file_classification": "raw file", "upload_key": "f9fa1ef3-0bb0-4f89-ac1a-dba619a2f551/4DNFIM5JM8B1.fastq.gz", "accession": "4DNFIM5JM8B1", "uuid": "f9fa1ef3-0bb0-4f89-ac1a-dba619a2f551", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 224068321, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6cfdd45f-f941-426f-8925-e868a96e8cb4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4497087, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIM5JM8B1/fastqc_report.html", "@id": "/quality-metrics-fastqc/6cfdd45f-f941-426f-8925-e868a96e8cb4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIT95FTZ1/@@download/4DNFIT95FTZ1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0d809e41-0bf3-4ab6-bb81-28b04bddd8e7/4DNFIT95FTZ1.fastq.gz", "@id": "/files-fastq/4DNFIT95FTZ1/", "display_title": "4DNFIT95FTZ1.fastq.gz", "md5sum": "da06800757d463b4dcb54b3f103a834d", "file_classification": "raw file", "upload_key": "0d809e41-0bf3-4ab6-bb81-28b04bddd8e7/4DNFIT95FTZ1.fastq.gz", "accession": "4DNFIT95FTZ1", "uuid": "0d809e41-0bf3-4ab6-bb81-28b04bddd8e7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 260859965, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "43ac1484-b69d-424a-85be-b4b4a297e0c2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5275435, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT95FTZ1/fastqc_report.html", "@id": "/quality-metrics-fastqc/43ac1484-b69d-424a-85be-b4b4a297e0c2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPHJYIB9/@@download/4DNFIPHJYIB9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/40c3a20b-6ff8-4874-b8dd-faedc19ebaa5/4DNFIPHJYIB9.fastq.gz", "@id": "/files-fastq/4DNFIPHJYIB9/", "display_title": "4DNFIPHJYIB9.fastq.gz", "md5sum": "e8b609078a02ead53bc853ada51d4a6f", "file_classification": "raw file", "upload_key": "40c3a20b-6ff8-4874-b8dd-faedc19ebaa5/4DNFIPHJYIB9.fastq.gz", "accession": "4DNFIPHJYIB9", "uuid": "40c3a20b-6ff8-4874-b8dd-faedc19ebaa5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 225721450, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "09ff4360-549b-4879-add9-0d2367214c51", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4551997, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPHJYIB9/fastqc_report.html", "@id": "/quality-metrics-fastqc/09ff4360-549b-4879-add9-0d2367214c51/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5EGYHJW/@@download/4DNFI5EGYHJW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/37de6521-7d7e-431b-90c7-95427ae1a001/4DNFI5EGYHJW.fastq.gz", "@id": "/files-fastq/4DNFI5EGYHJW/", "display_title": "4DNFI5EGYHJW.fastq.gz", "md5sum": "2d5c89500119ec1d301f79e5a9801cee", "file_classification": "raw file", "upload_key": "37de6521-7d7e-431b-90c7-95427ae1a001/4DNFI5EGYHJW.fastq.gz", "accession": "4DNFI5EGYHJW", "uuid": "37de6521-7d7e-431b-90c7-95427ae1a001", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 197656549, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f501c65b-b74d-413f-b39d-b347707fe02b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3964238, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5EGYHJW/fastqc_report.html", "@id": "/quality-metrics-fastqc/f501c65b-b74d-413f-b39d-b347707fe02b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMJZJIMB/@@download/4DNFIMJZJIMB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/615a8068-84b5-4381-9a3c-0cd28f4bc3f7/4DNFIMJZJIMB.fastq.gz", "@id": "/files-fastq/4DNFIMJZJIMB/", "display_title": "4DNFIMJZJIMB.fastq.gz", "md5sum": "4324f833c8a9aff9ebaab752e97b9cb1", "file_classification": "raw file", "upload_key": "615a8068-84b5-4381-9a3c-0cd28f4bc3f7/4DNFIMJZJIMB.fastq.gz", "accession": "4DNFIMJZJIMB", "uuid": "615a8068-84b5-4381-9a3c-0cd28f4bc3f7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 231141891, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d8186b44-bc94-42d3-8a78-bb450abeb6ae", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4702406, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMJZJIMB/fastqc_report.html", "@id": "/quality-metrics-fastqc/d8186b44-bc94-42d3-8a78-bb450abeb6ae/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXR2FGQT/@@download/4DNFIXR2FGQT.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2f39db3f-b69e-475d-aaef-e3d61ea0c0b4/4DNFIXR2FGQT.fastq.gz", "@id": "/files-fastq/4DNFIXR2FGQT/", "display_title": "4DNFIXR2FGQT.fastq.gz", "md5sum": "396e5bee15633b1ac31ba7ee900d54ef", "file_classification": "raw file", "upload_key": "2f39db3f-b69e-475d-aaef-e3d61ea0c0b4/4DNFIXR2FGQT.fastq.gz", "accession": "4DNFIXR2FGQT", "uuid": "2f39db3f-b69e-475d-aaef-e3d61ea0c0b4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230488350, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4dae060a-15f3-4478-86cc-0f0d9fcb2324", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4684080, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXR2FGQT/fastqc_report.html", "@id": "/quality-metrics-fastqc/4dae060a-15f3-4478-86cc-0f0d9fcb2324/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBT4J8SL/@@download/4DNFIBT4J8SL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3b03743e-449e-47aa-9b49-faf5fd56199f/4DNFIBT4J8SL.fastq.gz", "@id": "/files-fastq/4DNFIBT4J8SL/", "display_title": "4DNFIBT4J8SL.fastq.gz", "md5sum": "d10bd3bbb4bbe59eca966b70830eef85", "file_classification": "raw file", "upload_key": "3b03743e-449e-47aa-9b49-faf5fd56199f/4DNFIBT4J8SL.fastq.gz", "accession": "4DNFIBT4J8SL", "uuid": "3b03743e-449e-47aa-9b49-faf5fd56199f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 217898017, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "117b4649-7767-4b29-aa4a-ca6a96ec051c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4422195, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBT4J8SL/fastqc_report.html", "@id": "/quality-metrics-fastqc/117b4649-7767-4b29-aa4a-ca6a96ec051c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVTNP87C/@@download/4DNFIVTNP87C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/dd1a2827-8a06-41b7-9af2-df27ed706257/4DNFIVTNP87C.fastq.gz", "@id": "/files-fastq/4DNFIVTNP87C/", "display_title": "4DNFIVTNP87C.fastq.gz", "md5sum": "491fe19ba59cde5cf9bda8bf8b171f7d", "file_classification": "raw file", "upload_key": "dd1a2827-8a06-41b7-9af2-df27ed706257/4DNFIVTNP87C.fastq.gz", "accession": "4DNFIVTNP87C", "uuid": "dd1a2827-8a06-41b7-9af2-df27ed706257", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 294016244, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bdd69bb0-5a5a-4e86-9ddb-fb282c00829c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5959309, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVTNP87C/fastqc_report.html", "@id": "/quality-metrics-fastqc/bdd69bb0-5a5a-4e86-9ddb-fb282c00829c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIEOT9EBM/@@download/4DNFIEOT9EBM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/671f022e-a7c0-482f-bce9-bcff776d7e80/4DNFIEOT9EBM.fastq.gz", "@id": "/files-fastq/4DNFIEOT9EBM/", "display_title": "4DNFIEOT9EBM.fastq.gz", "md5sum": "7752ef6c945007ac50b9343c1fb722be", "file_classification": "raw file", "upload_key": "671f022e-a7c0-482f-bce9-bcff776d7e80/4DNFIEOT9EBM.fastq.gz", "accession": "4DNFIEOT9EBM", "uuid": "671f022e-a7c0-482f-bce9-bcff776d7e80", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 275615038, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "271e284f-55c2-425b-a7fd-d043f34cb8fa", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5568909, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEOT9EBM/fastqc_report.html", "@id": "/quality-metrics-fastqc/271e284f-55c2-425b-a7fd-d043f34cb8fa/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWBBXBTP/@@download/4DNFIWBBXBTP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f90e43e2-6b79-422a-aae6-ab5e9acfba41/4DNFIWBBXBTP.fastq.gz", "@id": "/files-fastq/4DNFIWBBXBTP/", "display_title": "4DNFIWBBXBTP.fastq.gz", "md5sum": "888775fe8558cd74fe861c5d9b9e0f31", "file_classification": "raw file", "upload_key": "f90e43e2-6b79-422a-aae6-ab5e9acfba41/4DNFIWBBXBTP.fastq.gz", "accession": "4DNFIWBBXBTP", "uuid": "f90e43e2-6b79-422a-aae6-ab5e9acfba41", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 219805063, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e8382bc5-32c4-44a7-94d5-06ffaa2f95f3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4452472, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWBBXBTP/fastqc_report.html", "@id": "/quality-metrics-fastqc/e8382bc5-32c4-44a7-94d5-06ffaa2f95f3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHE11IEP/@@download/4DNFIHE11IEP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c3e042f4-ec36-4776-a009-b1a08c4857cb/4DNFIHE11IEP.fastq.gz", "@id": "/files-fastq/4DNFIHE11IEP/", "display_title": "4DNFIHE11IEP.fastq.gz", "md5sum": "74c0f95c694dc72a9d09669a22984b20", "file_classification": "raw file", "upload_key": "c3e042f4-ec36-4776-a009-b1a08c4857cb/4DNFIHE11IEP.fastq.gz", "accession": "4DNFIHE11IEP", "uuid": "c3e042f4-ec36-4776-a009-b1a08c4857cb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 242154594, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a5b3c08d-5e15-4e2b-9196-c7b9c88a32e0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4954693, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHE11IEP/fastqc_report.html", "@id": "/quality-metrics-fastqc/a5b3c08d-5e15-4e2b-9196-c7b9c88a32e0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUW2OQVL/@@download/4DNFIUW2OQVL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/65b8aa29-68eb-4b92-a164-7d344770c525/4DNFIUW2OQVL.fastq.gz", "@id": "/files-fastq/4DNFIUW2OQVL/", "display_title": "4DNFIUW2OQVL.fastq.gz", "md5sum": "cabff6d70b97e99bc09619ca4e1a5881", "file_classification": "raw file", "upload_key": "65b8aa29-68eb-4b92-a164-7d344770c525/4DNFIUW2OQVL.fastq.gz", "accession": "4DNFIUW2OQVL", "uuid": "65b8aa29-68eb-4b92-a164-7d344770c525", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 244274551, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "736f208a-637e-4309-99b4-7e99ef9d2de5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4980651, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUW2OQVL/fastqc_report.html", "@id": "/quality-metrics-fastqc/736f208a-637e-4309-99b4-7e99ef9d2de5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUOFVD4A/@@download/4DNFIUOFVD4A.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6a098043-f053-4652-85a7-5016ce794d4d/4DNFIUOFVD4A.fastq.gz", "@id": "/files-fastq/4DNFIUOFVD4A/", "display_title": "4DNFIUOFVD4A.fastq.gz", "md5sum": "3fff449d7d9e65a9b565f4ff5413be53", "file_classification": "raw file", "upload_key": "6a098043-f053-4652-85a7-5016ce794d4d/4DNFIUOFVD4A.fastq.gz", "accession": "4DNFIUOFVD4A", "uuid": "6a098043-f053-4652-85a7-5016ce794d4d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 186017391, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "57f2ca5c-1a79-459d-8d86-91c517949655", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3552464, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUOFVD4A/fastqc_report.html", "@id": "/quality-metrics-fastqc/57f2ca5c-1a79-459d-8d86-91c517949655/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBQB1NUZ/@@download/4DNFIBQB1NUZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/75bbe671-1cd1-4bd4-871f-34e7b896c741/4DNFIBQB1NUZ.fastq.gz", "@id": "/files-fastq/4DNFIBQB1NUZ/", "display_title": "4DNFIBQB1NUZ.fastq.gz", "md5sum": "c44cee1bb4b55e2c48277354d4e14b17", "file_classification": "raw file", "upload_key": "75bbe671-1cd1-4bd4-871f-34e7b896c741/4DNFIBQB1NUZ.fastq.gz", "accession": "4DNFIBQB1NUZ", "uuid": "75bbe671-1cd1-4bd4-871f-34e7b896c741", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 231854209, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c599d4ee-6e4b-4f6c-bb1a-010c67524eb4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4673425, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBQB1NUZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/c599d4ee-6e4b-4f6c-bb1a-010c67524eb4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIG2MINY4/@@download/4DNFIG2MINY4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1d24ece9-505e-4aac-b0c3-09601b696574/4DNFIG2MINY4.fastq.gz", "@id": "/files-fastq/4DNFIG2MINY4/", "display_title": "4DNFIG2MINY4.fastq.gz", "md5sum": "e6192a8fd825d09a8e0346a6563b0f2a", "file_classification": "raw file", "upload_key": "1d24ece9-505e-4aac-b0c3-09601b696574/4DNFIG2MINY4.fastq.gz", "accession": "4DNFIG2MINY4", "uuid": "1d24ece9-505e-4aac-b0c3-09601b696574", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 182623011, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e7ce5438-9fc2-48ce-8b48-65b14e5ae257", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3647343, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIG2MINY4/fastqc_report.html", "@id": "/quality-metrics-fastqc/e7ce5438-9fc2-48ce-8b48-65b14e5ae257/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIO4NRBV/@@download/4DNFIIO4NRBV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c4c740aa-0b80-4319-8576-4013cde4eae0/4DNFIIO4NRBV.fastq.gz", "@id": "/files-fastq/4DNFIIO4NRBV/", "display_title": "4DNFIIO4NRBV.fastq.gz", "md5sum": "97ade7d3626dab2f945370e431247fb5", "file_classification": "raw file", "upload_key": "c4c740aa-0b80-4319-8576-4013cde4eae0/4DNFIIO4NRBV.fastq.gz", "accession": "4DNFIIO4NRBV", "uuid": "c4c740aa-0b80-4319-8576-4013cde4eae0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 196922424, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4a94f573-39ff-41f6-a95d-1efeba72bf23", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3965480, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIO4NRBV/fastqc_report.html", "@id": "/quality-metrics-fastqc/4a94f573-39ff-41f6-a95d-1efeba72bf23/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIESVQBI8/@@download/4DNFIESVQBI8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cc03a091-f1b5-4649-861d-842d9c0ef680/4DNFIESVQBI8.fastq.gz", "@id": "/files-fastq/4DNFIESVQBI8/", "display_title": "4DNFIESVQBI8.fastq.gz", "md5sum": "c8a7f4716d0ca1d7ef39033849ccb235", "file_classification": "raw file", "upload_key": "cc03a091-f1b5-4649-861d-842d9c0ef680/4DNFIESVQBI8.fastq.gz", "accession": "4DNFIESVQBI8", "uuid": "cc03a091-f1b5-4649-861d-842d9c0ef680", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 311443420, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dee35e71-85b1-4ded-b0a7-868b450e3697", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6394310, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIESVQBI8/fastqc_report.html", "@id": "/quality-metrics-fastqc/dee35e71-85b1-4ded-b0a7-868b450e3697/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMGOLK9V/@@download/4DNFIMGOLK9V.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/96063ebf-9f82-443e-9ea3-2b20d2f72805/4DNFIMGOLK9V.fastq.gz", "@id": "/files-fastq/4DNFIMGOLK9V/", "display_title": "4DNFIMGOLK9V.fastq.gz", "md5sum": "370fc2fb5949d2224269a8af243a5197", "file_classification": "raw file", "upload_key": "96063ebf-9f82-443e-9ea3-2b20d2f72805/4DNFIMGOLK9V.fastq.gz", "accession": "4DNFIMGOLK9V", "uuid": "96063ebf-9f82-443e-9ea3-2b20d2f72805", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 336865038, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "71a35592-b4f8-4070-8c34-3ea41a7e70c2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6875595, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMGOLK9V/fastqc_report.html", "@id": "/quality-metrics-fastqc/71a35592-b4f8-4070-8c34-3ea41a7e70c2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI879DSSA/@@download/4DNFI879DSSA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ea51ed22-041e-4f4d-9f63-ef320ce508bf/4DNFI879DSSA.fastq.gz", "@id": "/files-fastq/4DNFI879DSSA/", "display_title": "4DNFI879DSSA.fastq.gz", "md5sum": "52b196c2b42abd72f9bfbf0e4903a197", "file_classification": "raw file", "upload_key": "ea51ed22-041e-4f4d-9f63-ef320ce508bf/4DNFI879DSSA.fastq.gz", "accession": "4DNFI879DSSA", "uuid": "ea51ed22-041e-4f4d-9f63-ef320ce508bf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 329727306, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ee7a67e7-bbf0-4e2e-b23c-17bd6f149058", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6743646, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI879DSSA/fastqc_report.html", "@id": "/quality-metrics-fastqc/ee7a67e7-bbf0-4e2e-b23c-17bd6f149058/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6J3U11B/@@download/4DNFI6J3U11B.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/34867752-4782-40ed-8016-7a601943a9dd/4DNFI6J3U11B.fastq.gz", "@id": "/files-fastq/4DNFI6J3U11B/", "display_title": "4DNFI6J3U11B.fastq.gz", "md5sum": "37236f8e84f62b5578fe6ddb32e29488", "file_classification": "raw file", "upload_key": "34867752-4782-40ed-8016-7a601943a9dd/4DNFI6J3U11B.fastq.gz", "accession": "4DNFI6J3U11B", "uuid": "34867752-4782-40ed-8016-7a601943a9dd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 212839879, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "aadb3b4b-95ce-4ef0-aa67-792c99294dbc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4322710, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6J3U11B/fastqc_report.html", "@id": "/quality-metrics-fastqc/aadb3b4b-95ce-4ef0-aa67-792c99294dbc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1SDS8CY/@@download/4DNFI1SDS8CY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/17c0b67b-3691-4c12-8080-f438227f3f25/4DNFI1SDS8CY.fastq.gz", "@id": "/files-fastq/4DNFI1SDS8CY/", "display_title": "4DNFI1SDS8CY.fastq.gz", "md5sum": "8dd80c0ea607c7ac282e6c8555bc7654", "file_classification": "raw file", "upload_key": "17c0b67b-3691-4c12-8080-f438227f3f25/4DNFI1SDS8CY.fastq.gz", "accession": "4DNFI1SDS8CY", "uuid": "17c0b67b-3691-4c12-8080-f438227f3f25", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 294866809, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d1baef9f-2a47-458f-8179-08922f131fbd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5982286, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1SDS8CY/fastqc_report.html", "@id": "/quality-metrics-fastqc/d1baef9f-2a47-458f-8179-08922f131fbd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILE65AJU/@@download/4DNFILE65AJU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/070bd5c5-94e9-41e4-9eb5-dfa2a4d92b4d/4DNFILE65AJU.fastq.gz", "@id": "/files-fastq/4DNFILE65AJU/", "display_title": "4DNFILE65AJU.fastq.gz", "md5sum": "15ffa7c0a7a3dfc86a2b881ba609b1a5", "file_classification": "raw file", "upload_key": "070bd5c5-94e9-41e4-9eb5-dfa2a4d92b4d/4DNFILE65AJU.fastq.gz", "accession": "4DNFILE65AJU", "uuid": "070bd5c5-94e9-41e4-9eb5-dfa2a4d92b4d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 336423447, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a563037a-66fd-44ae-925a-e8af1a3a0db4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6845234, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILE65AJU/fastqc_report.html", "@id": "/quality-metrics-fastqc/a563037a-66fd-44ae-925a-e8af1a3a0db4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1T4NL5W/@@download/4DNFI1T4NL5W.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b00f0163-2d00-4076-ae2f-7cb38e970fb8/4DNFI1T4NL5W.fastq.gz", "@id": "/files-fastq/4DNFI1T4NL5W/", "display_title": "4DNFI1T4NL5W.fastq.gz", "md5sum": "8a02041cbd7537ea8a5c7b309cfa5f70", "file_classification": "raw file", "upload_key": "b00f0163-2d00-4076-ae2f-7cb38e970fb8/4DNFI1T4NL5W.fastq.gz", "accession": "4DNFI1T4NL5W", "uuid": "b00f0163-2d00-4076-ae2f-7cb38e970fb8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 559151826, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "14fe4f17-38dd-4c65-9d82-8c70018ae5b3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 11495415, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1T4NL5W/fastqc_report.html", "@id": "/quality-metrics-fastqc/14fe4f17-38dd-4c65-9d82-8c70018ae5b3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITIFW5AQ/@@download/4DNFITIFW5AQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/65666252-5798-4be5-808c-1cf9d82ed415/4DNFITIFW5AQ.fastq.gz", "@id": "/files-fastq/4DNFITIFW5AQ/", "display_title": "4DNFITIFW5AQ.fastq.gz", "md5sum": "d8386bccbc0fa463b7182f72200685fa", "file_classification": "raw file", "upload_key": "65666252-5798-4be5-808c-1cf9d82ed415/4DNFITIFW5AQ.fastq.gz", "accession": "4DNFITIFW5AQ", "uuid": "65666252-5798-4be5-808c-1cf9d82ed415", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 79038318, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9debbe88-34bb-4a2b-bfff-826bdc684281", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1569315, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITIFW5AQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/9debbe88-34bb-4a2b-bfff-826bdc684281/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITGONUZA/@@download/4DNFITGONUZA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0df8e921-ccc4-4f17-b188-de07e8561f70/4DNFITGONUZA.fastq.gz", "@id": "/files-fastq/4DNFITGONUZA/", "display_title": "4DNFITGONUZA.fastq.gz", "md5sum": "d9f5565a6f42bc5cd57c69acfc6f9718", "file_classification": "raw file", "upload_key": "0df8e921-ccc4-4f17-b188-de07e8561f70/4DNFITGONUZA.fastq.gz", "accession": "4DNFITGONUZA", "uuid": "0df8e921-ccc4-4f17-b188-de07e8561f70", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 248172473, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "396d265f-0f76-4793-9a32-2772aba39847", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5044365, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITGONUZA/fastqc_report.html", "@id": "/quality-metrics-fastqc/396d265f-0f76-4793-9a32-2772aba39847/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQV6NGY8/@@download/4DNFIQV6NGY8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/305986db-87d7-4dd9-a89f-a742ad76b202/4DNFIQV6NGY8.fastq.gz", "@id": "/files-fastq/4DNFIQV6NGY8/", "display_title": "4DNFIQV6NGY8.fastq.gz", "md5sum": "eae40f7435cddd3eef9d081f5ff4b7f2", "file_classification": "raw file", "upload_key": "305986db-87d7-4dd9-a89f-a742ad76b202/4DNFIQV6NGY8.fastq.gz", "accession": "4DNFIQV6NGY8", "uuid": "305986db-87d7-4dd9-a89f-a742ad76b202", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 292242659, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "80cace6a-df5b-4bb9-8bbc-d8f6cd455039", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5939926, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQV6NGY8/fastqc_report.html", "@id": "/quality-metrics-fastqc/80cace6a-df5b-4bb9-8bbc-d8f6cd455039/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINSZNRJG/@@download/4DNFINSZNRJG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1ff49c69-ba57-46bb-8be0-d33ecbc7d920/4DNFINSZNRJG.fastq.gz", "@id": "/files-fastq/4DNFINSZNRJG/", "display_title": "4DNFINSZNRJG.fastq.gz", "md5sum": "ad44e9772bcee4a8aefa65850c9b53a8", "file_classification": "raw file", "upload_key": "1ff49c69-ba57-46bb-8be0-d33ecbc7d920/4DNFINSZNRJG.fastq.gz", "accession": "4DNFINSZNRJG", "uuid": "1ff49c69-ba57-46bb-8be0-d33ecbc7d920", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 255714406, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "aee69e9e-b5cf-4f99-94d3-f07b47b6a2f2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5194091, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINSZNRJG/fastqc_report.html", "@id": "/quality-metrics-fastqc/aee69e9e-b5cf-4f99-94d3-f07b47b6a2f2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOPGKI16/@@download/4DNFIOPGKI16.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/50e89193-326a-4cc7-9785-af9f635e7e90/4DNFIOPGKI16.fastq.gz", "@id": "/files-fastq/4DNFIOPGKI16/", "display_title": "4DNFIOPGKI16.fastq.gz", "md5sum": "19bd80d11a822d47ed1db85a485a322b", "file_classification": "raw file", "upload_key": "50e89193-326a-4cc7-9785-af9f635e7e90/4DNFIOPGKI16.fastq.gz", "accession": "4DNFIOPGKI16", "uuid": "50e89193-326a-4cc7-9785-af9f635e7e90", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 174303343, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f2015a1f-660d-43ab-a350-a1fe89317f20", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3476814, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOPGKI16/fastqc_report.html", "@id": "/quality-metrics-fastqc/f2015a1f-660d-43ab-a350-a1fe89317f20/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI977GPII/@@download/4DNFI977GPII.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3190576c-bf38-43c6-a279-a0dc9f7e374e/4DNFI977GPII.fastq.gz", "@id": "/files-fastq/4DNFI977GPII/", "display_title": "4DNFI977GPII.fastq.gz", "md5sum": "45dffc113ff20e4ac84e2cf983e561a7", "file_classification": "raw file", "upload_key": "3190576c-bf38-43c6-a279-a0dc9f7e374e/4DNFI977GPII.fastq.gz", "accession": "4DNFI977GPII", "uuid": "3190576c-bf38-43c6-a279-a0dc9f7e374e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 198521134, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b7eb7643-a2b4-4629-a6dc-53920e2b0355", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3976956, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI977GPII/fastqc_report.html", "@id": "/quality-metrics-fastqc/b7eb7643-a2b4-4629-a6dc-53920e2b0355/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3FFEPBQ/@@download/4DNFI3FFEPBQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3641a440-c131-41aa-b39b-fab5af799982/4DNFI3FFEPBQ.fastq.gz", "@id": "/files-fastq/4DNFI3FFEPBQ/", "display_title": "4DNFI3FFEPBQ.fastq.gz", "md5sum": "d5d790e787ede140a7fb63cc83555778", "file_classification": "raw file", "upload_key": "3641a440-c131-41aa-b39b-fab5af799982/4DNFI3FFEPBQ.fastq.gz", "accession": "4DNFI3FFEPBQ", "uuid": "3641a440-c131-41aa-b39b-fab5af799982", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232455019, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d0541860-e0aa-422f-a93b-303b2a49c6c9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4652733, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3FFEPBQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/d0541860-e0aa-422f-a93b-303b2a49c6c9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIP4E2J5/@@download/4DNFIIP4E2J5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fb3ef77b-9a29-463f-8145-e2a814b9b328/4DNFIIP4E2J5.fastq.gz", "@id": "/files-fastq/4DNFIIP4E2J5/", "display_title": "4DNFIIP4E2J5.fastq.gz", "md5sum": "a63e54e5f0ff594fc040a9df1df98937", "file_classification": "raw file", "upload_key": "fb3ef77b-9a29-463f-8145-e2a814b9b328/4DNFIIP4E2J5.fastq.gz", "accession": "4DNFIIP4E2J5", "uuid": "fb3ef77b-9a29-463f-8145-e2a814b9b328", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 334088772, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3fc511fd-7965-4463-91c7-9c910ef8dfbc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6738693, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIP4E2J5/fastqc_report.html", "@id": "/quality-metrics-fastqc/3fc511fd-7965-4463-91c7-9c910ef8dfbc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI454QP6I/@@download/4DNFI454QP6I.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c29d61a8-907b-47ba-9720-6cbf2f0f0741/4DNFI454QP6I.fastq.gz", "@id": "/files-fastq/4DNFI454QP6I/", "display_title": "4DNFI454QP6I.fastq.gz", "md5sum": "3e1a783abf165372c8b51498bf5a7c50", "file_classification": "raw file", "upload_key": "c29d61a8-907b-47ba-9720-6cbf2f0f0741/4DNFI454QP6I.fastq.gz", "accession": "4DNFI454QP6I", "uuid": "c29d61a8-907b-47ba-9720-6cbf2f0f0741", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 276935139, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "540ae79d-7924-413d-b9d1-90f574de4ed6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5612877, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI454QP6I/fastqc_report.html", "@id": "/quality-metrics-fastqc/540ae79d-7924-413d-b9d1-90f574de4ed6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJSUEHJL/@@download/4DNFIJSUEHJL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ed31cf16-7c6b-4c2f-97c8-bd2ea744fa77/4DNFIJSUEHJL.fastq.gz", "@id": "/files-fastq/4DNFIJSUEHJL/", "display_title": "4DNFIJSUEHJL.fastq.gz", "md5sum": "a0b004e588d39d566cdc2e54132cecd0", "file_classification": "raw file", "upload_key": "ed31cf16-7c6b-4c2f-97c8-bd2ea744fa77/4DNFIJSUEHJL.fastq.gz", "accession": "4DNFIJSUEHJL", "uuid": "ed31cf16-7c6b-4c2f-97c8-bd2ea744fa77", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233528946, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "53b5397a-4262-410d-824f-bf86f2b36ccb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4725628, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJSUEHJL/fastqc_report.html", "@id": "/quality-metrics-fastqc/53b5397a-4262-410d-824f-bf86f2b36ccb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILY9XR46/@@download/4DNFILY9XR46.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1a65e609-1ff2-4efd-957e-8a076bb65bf3/4DNFILY9XR46.fastq.gz", "@id": "/files-fastq/4DNFILY9XR46/", "display_title": "4DNFILY9XR46.fastq.gz", "md5sum": "c0229b4681019bfd079ecf30bc3b698b", "file_classification": "raw file", "upload_key": "1a65e609-1ff2-4efd-957e-8a076bb65bf3/4DNFILY9XR46.fastq.gz", "accession": "4DNFILY9XR46", "uuid": "1a65e609-1ff2-4efd-957e-8a076bb65bf3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 374705406, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9f4ce070-c08c-49dc-8615-29eaa9f1ad1b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7678876, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILY9XR46/fastqc_report.html", "@id": "/quality-metrics-fastqc/9f4ce070-c08c-49dc-8615-29eaa9f1ad1b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWOHBWCI/@@download/4DNFIWOHBWCI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4140ff49-718a-4156-95e9-775cb7c032fd/4DNFIWOHBWCI.fastq.gz", "@id": "/files-fastq/4DNFIWOHBWCI/", "display_title": "4DNFIWOHBWCI.fastq.gz", "md5sum": "d8a72f33e36c6b8ca6df513454e05493", "file_classification": "raw file", "upload_key": "4140ff49-718a-4156-95e9-775cb7c032fd/4DNFIWOHBWCI.fastq.gz", "accession": "4DNFIWOHBWCI", "uuid": "4140ff49-718a-4156-95e9-775cb7c032fd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 226756912, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5312d099-30bd-4240-bc09-486bf51003fc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4516559, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWOHBWCI/fastqc_report.html", "@id": "/quality-metrics-fastqc/5312d099-30bd-4240-bc09-486bf51003fc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI26SFAM3/@@download/4DNFI26SFAM3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8c5bb157-023b-4ba2-a7a5-948f7ae9aef7/4DNFI26SFAM3.fastq.gz", "@id": "/files-fastq/4DNFI26SFAM3/", "display_title": "4DNFI26SFAM3.fastq.gz", "md5sum": "1a5914aef1454d8aca8d90c3b8b14c05", "file_classification": "raw file", "upload_key": "8c5bb157-023b-4ba2-a7a5-948f7ae9aef7/4DNFI26SFAM3.fastq.gz", "accession": "4DNFI26SFAM3", "uuid": "8c5bb157-023b-4ba2-a7a5-948f7ae9aef7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 115015789, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ccedf1c2-0294-486d-b657-f55499c27865", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2311123, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI26SFAM3/fastqc_report.html", "@id": "/quality-metrics-fastqc/ccedf1c2-0294-486d-b657-f55499c27865/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVM5DLO1/@@download/4DNFIVM5DLO1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/93dea3ba-bca6-4e27-a80d-3983be17ce84/4DNFIVM5DLO1.fastq.gz", "@id": "/files-fastq/4DNFIVM5DLO1/", "display_title": "4DNFIVM5DLO1.fastq.gz", "md5sum": "0dfd047b787895875bc5ed307dc6fe6c", "file_classification": "raw file", "upload_key": "93dea3ba-bca6-4e27-a80d-3983be17ce84/4DNFIVM5DLO1.fastq.gz", "accession": "4DNFIVM5DLO1", "uuid": "93dea3ba-bca6-4e27-a80d-3983be17ce84", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 228198169, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8be8f2a4-4a39-40b3-8bd9-680b5bb5c34b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4629970, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVM5DLO1/fastqc_report.html", "@id": "/quality-metrics-fastqc/8be8f2a4-4a39-40b3-8bd9-680b5bb5c34b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIW5U3SHV/@@download/4DNFIW5U3SHV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bbaaaf6e-579a-4bd9-9369-3058e8d044e8/4DNFIW5U3SHV.fastq.gz", "@id": "/files-fastq/4DNFIW5U3SHV/", "display_title": "4DNFIW5U3SHV.fastq.gz", "md5sum": "860836f8a3f355dcc8b155909eb06ccd", "file_classification": "raw file", "upload_key": "bbaaaf6e-579a-4bd9-9369-3058e8d044e8/4DNFIW5U3SHV.fastq.gz", "accession": "4DNFIW5U3SHV", "uuid": "bbaaaf6e-579a-4bd9-9369-3058e8d044e8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 146429270, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fc51d23c-772f-4661-8391-41f01676c9db", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2940525, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW5U3SHV/fastqc_report.html", "@id": "/quality-metrics-fastqc/fc51d23c-772f-4661-8391-41f01676c9db/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUT8GFTW/@@download/4DNFIUT8GFTW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/132192e5-4403-4e2e-959a-19cc172d5c2b/4DNFIUT8GFTW.fastq.gz", "@id": "/files-fastq/4DNFIUT8GFTW/", "display_title": "4DNFIUT8GFTW.fastq.gz", "md5sum": "294006085e2e835f8fc862c271bd70d4", "file_classification": "raw file", "upload_key": "132192e5-4403-4e2e-959a-19cc172d5c2b/4DNFIUT8GFTW.fastq.gz", "accession": "4DNFIUT8GFTW", "uuid": "132192e5-4403-4e2e-959a-19cc172d5c2b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 337754889, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "365aad8f-3d3b-46dc-9f2f-7140109b54bd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6890809, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUT8GFTW/fastqc_report.html", "@id": "/quality-metrics-fastqc/365aad8f-3d3b-46dc-9f2f-7140109b54bd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2H48TGN/@@download/4DNFI2H48TGN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4bd88391-4b4f-4900-97f0-81813689d12f/4DNFI2H48TGN.fastq.gz", "@id": "/files-fastq/4DNFI2H48TGN/", "display_title": "4DNFI2H48TGN.fastq.gz", "md5sum": "301265375ce525260ee99467b362f8bb", "file_classification": "raw file", "upload_key": "4bd88391-4b4f-4900-97f0-81813689d12f/4DNFI2H48TGN.fastq.gz", "accession": "4DNFI2H48TGN", "uuid": "4bd88391-4b4f-4900-97f0-81813689d12f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 77855834, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b7c4e6c1-5143-4a3f-a0a7-1749b6155ff6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1543859, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2H48TGN/fastqc_report.html", "@id": "/quality-metrics-fastqc/b7c4e6c1-5143-4a3f-a0a7-1749b6155ff6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIY22KTKH/@@download/4DNFIY22KTKH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c23efa15-6389-450d-a030-00f2e87c8cd4/4DNFIY22KTKH.fastq.gz", "@id": "/files-fastq/4DNFIY22KTKH/", "display_title": "4DNFIY22KTKH.fastq.gz", "md5sum": "d08ed047dcc9a9711ad9e627f9230481", "file_classification": "raw file", "upload_key": "c23efa15-6389-450d-a030-00f2e87c8cd4/4DNFIY22KTKH.fastq.gz", "accession": "4DNFIY22KTKH", "uuid": "c23efa15-6389-450d-a030-00f2e87c8cd4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 257215573, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "03214ba9-40de-4b81-b4b5-54635b37bc8b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5189740, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIY22KTKH/fastqc_report.html", "@id": "/quality-metrics-fastqc/03214ba9-40de-4b81-b4b5-54635b37bc8b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6I2KGJM/@@download/4DNFI6I2KGJM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d94e964c-5199-45da-b7c3-bd2050f6c4ff/4DNFI6I2KGJM.fastq.gz", "@id": "/files-fastq/4DNFI6I2KGJM/", "display_title": "4DNFI6I2KGJM.fastq.gz", "md5sum": "9cc825a98db2093a1ce48087927fa576", "file_classification": "raw file", "upload_key": "d94e964c-5199-45da-b7c3-bd2050f6c4ff/4DNFI6I2KGJM.fastq.gz", "accession": "4DNFI6I2KGJM", "uuid": "d94e964c-5199-45da-b7c3-bd2050f6c4ff", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 343107278, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "42070db0-5ff3-4c28-bd56-bfd77a7db6cb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6984968, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6I2KGJM/fastqc_report.html", "@id": "/quality-metrics-fastqc/42070db0-5ff3-4c28-bd56-bfd77a7db6cb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5I8YII5/@@download/4DNFI5I8YII5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ac17b693-6328-4a10-8fa9-37c1d1e85525/4DNFI5I8YII5.fastq.gz", "@id": "/files-fastq/4DNFI5I8YII5/", "display_title": "4DNFI5I8YII5.fastq.gz", "md5sum": "75d226cf374df41acecf5ce797de40d2", "file_classification": "raw file", "upload_key": "ac17b693-6328-4a10-8fa9-37c1d1e85525/4DNFI5I8YII5.fastq.gz", "accession": "4DNFI5I8YII5", "uuid": "ac17b693-6328-4a10-8fa9-37c1d1e85525", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 314815962, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6174e2ea-0ccf-43bf-a5e2-f793fe8a3cd3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6435870, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5I8YII5/fastqc_report.html", "@id": "/quality-metrics-fastqc/6174e2ea-0ccf-43bf-a5e2-f793fe8a3cd3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITZN7TQ1/@@download/4DNFITZN7TQ1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/989b852e-05a4-44e5-a5ee-91889381a845/4DNFITZN7TQ1.fastq.gz", "@id": "/files-fastq/4DNFITZN7TQ1/", "display_title": "4DNFITZN7TQ1.fastq.gz", "md5sum": "00d922abd93ffa813ee23341ee243558", "file_classification": "raw file", "upload_key": "989b852e-05a4-44e5-a5ee-91889381a845/4DNFITZN7TQ1.fastq.gz", "accession": "4DNFITZN7TQ1", "uuid": "989b852e-05a4-44e5-a5ee-91889381a845", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 350720793, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "067a1a1b-c5c5-40df-a943-a0d5ea02ba3c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7193776, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITZN7TQ1/fastqc_report.html", "@id": "/quality-metrics-fastqc/067a1a1b-c5c5-40df-a943-a0d5ea02ba3c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIF5CG4GA/@@download/4DNFIF5CG4GA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/129538f5-4412-4812-9599-dfafa3e66c47/4DNFIF5CG4GA.fastq.gz", "@id": "/files-fastq/4DNFIF5CG4GA/", "display_title": "4DNFIF5CG4GA.fastq.gz", "md5sum": "8cf69f7d329267edd9e58dae44029155", "file_classification": "raw file", "upload_key": "129538f5-4412-4812-9599-dfafa3e66c47/4DNFIF5CG4GA.fastq.gz", "accession": "4DNFIF5CG4GA", "uuid": "129538f5-4412-4812-9599-dfafa3e66c47", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 309232667, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d28c9670-783d-46cd-ac38-7d901ae12f6b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6290537, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF5CG4GA/fastqc_report.html", "@id": "/quality-metrics-fastqc/d28c9670-783d-46cd-ac38-7d901ae12f6b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9LN2Z8W/@@download/4DNFI9LN2Z8W.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ab6f2476-e552-4845-87ae-4e6e8a390fc1/4DNFI9LN2Z8W.fastq.gz", "@id": "/files-fastq/4DNFI9LN2Z8W/", "display_title": "4DNFI9LN2Z8W.fastq.gz", "md5sum": "ba44156770418ed17fa4c9d5e0bed605", "file_classification": "raw file", "upload_key": "ab6f2476-e552-4845-87ae-4e6e8a390fc1/4DNFI9LN2Z8W.fastq.gz", "accession": "4DNFI9LN2Z8W", "uuid": "ab6f2476-e552-4845-87ae-4e6e8a390fc1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 322124900, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3ed335c5-ae42-4906-a744-f1cf17953dc4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6591533, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9LN2Z8W/fastqc_report.html", "@id": "/quality-metrics-fastqc/3ed335c5-ae42-4906-a744-f1cf17953dc4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICETCNFN/@@download/4DNFICETCNFN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b9e507f5-9526-468f-b791-89d9764afb30/4DNFICETCNFN.fastq.gz", "@id": "/files-fastq/4DNFICETCNFN/", "display_title": "4DNFICETCNFN.fastq.gz", "md5sum": "a036fdd58908dc1f044d014b6e284611", "file_classification": "raw file", "upload_key": "b9e507f5-9526-468f-b791-89d9764afb30/4DNFICETCNFN.fastq.gz", "accession": "4DNFICETCNFN", "uuid": "b9e507f5-9526-468f-b791-89d9764afb30", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 284449593, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9bff9111-91ca-4ed8-b810-d9f72c7ab163", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6032734, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICETCNFN/fastqc_report.html", "@id": "/quality-metrics-fastqc/9bff9111-91ca-4ed8-b810-d9f72c7ab163/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3RTL66J/@@download/4DNFI3RTL66J.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5582d0a4-f52a-4ff3-938e-aaea95370822/4DNFI3RTL66J.fastq.gz", "@id": "/files-fastq/4DNFI3RTL66J/", "display_title": "4DNFI3RTL66J.fastq.gz", "md5sum": "49f18d048a5667f776fa9867931a4bf2", "file_classification": "raw file", "upload_key": "5582d0a4-f52a-4ff3-938e-aaea95370822/4DNFI3RTL66J.fastq.gz", "accession": "4DNFI3RTL66J", "uuid": "5582d0a4-f52a-4ff3-938e-aaea95370822", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235680303, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5eac7022-adc6-4b1f-baf8-d30446bba801", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4780059, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3RTL66J/fastqc_report.html", "@id": "/quality-metrics-fastqc/5eac7022-adc6-4b1f-baf8-d30446bba801/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJN3JDED/@@download/4DNFIJN3JDED.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9b947e00-552b-4b5d-b5c8-99aec8086773/4DNFIJN3JDED.fastq.gz", "@id": "/files-fastq/4DNFIJN3JDED/", "display_title": "4DNFIJN3JDED.fastq.gz", "md5sum": "4dba7d73a4b958296e58564b2ebc0ed8", "file_classification": "raw file", "upload_key": "9b947e00-552b-4b5d-b5c8-99aec8086773/4DNFIJN3JDED.fastq.gz", "accession": "4DNFIJN3JDED", "uuid": "9b947e00-552b-4b5d-b5c8-99aec8086773", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 285150048, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eda3ef56-d46a-47ff-9767-12df93b5544c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5768519, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJN3JDED/fastqc_report.html", "@id": "/quality-metrics-fastqc/eda3ef56-d46a-47ff-9767-12df93b5544c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFYNCOLE/@@download/4DNFIFYNCOLE.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6f5bf46d-f3c9-422a-bf45-32117b10e381/4DNFIFYNCOLE.fastq.gz", "@id": "/files-fastq/4DNFIFYNCOLE/", "display_title": "4DNFIFYNCOLE.fastq.gz", "md5sum": "ba9a5677e3724f83430e114f18e91844", "file_classification": "raw file", "upload_key": "6f5bf46d-f3c9-422a-bf45-32117b10e381/4DNFIFYNCOLE.fastq.gz", "accession": "4DNFIFYNCOLE", "uuid": "6f5bf46d-f3c9-422a-bf45-32117b10e381", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 210652532, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "159aa684-d83d-490d-954b-29b4a3867b78", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4411683, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFYNCOLE/fastqc_report.html", "@id": "/quality-metrics-fastqc/159aa684-d83d-490d-954b-29b4a3867b78/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIE6OCNP4/@@download/4DNFIE6OCNP4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/dd1e1854-57db-4d58-a96a-15676054701a/4DNFIE6OCNP4.fastq.gz", "@id": "/files-fastq/4DNFIE6OCNP4/", "display_title": "4DNFIE6OCNP4.fastq.gz", "md5sum": "3e04e3ad9eeda90582f231c4156ace51", "file_classification": "raw file", "upload_key": "dd1e1854-57db-4d58-a96a-15676054701a/4DNFIE6OCNP4.fastq.gz", "accession": "4DNFIE6OCNP4", "uuid": "dd1e1854-57db-4d58-a96a-15676054701a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 291233804, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "afd7d17e-b0f7-45b2-94b7-7950fc28a3c2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5884438, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE6OCNP4/fastqc_report.html", "@id": "/quality-metrics-fastqc/afd7d17e-b0f7-45b2-94b7-7950fc28a3c2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIL1NSEE8/@@download/4DNFIL1NSEE8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f26506c0-9fcd-4ee9-b8fe-912533389a2b/4DNFIL1NSEE8.fastq.gz", "@id": "/files-fastq/4DNFIL1NSEE8/", "display_title": "4DNFIL1NSEE8.fastq.gz", "md5sum": "c038a364ae6fcc713dd4e09c4b767c09", "file_classification": "raw file", "upload_key": "f26506c0-9fcd-4ee9-b8fe-912533389a2b/4DNFIL1NSEE8.fastq.gz", "accession": "4DNFIL1NSEE8", "uuid": "f26506c0-9fcd-4ee9-b8fe-912533389a2b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 246368126, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d4d9ec0d-c49c-424a-8909-2d29f6f0d75c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4924076, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIL1NSEE8/fastqc_report.html", "@id": "/quality-metrics-fastqc/d4d9ec0d-c49c-424a-8909-2d29f6f0d75c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIT29VIPN/@@download/4DNFIT29VIPN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cb76851b-3dec-4a36-ae52-d0a3543192fa/4DNFIT29VIPN.fastq.gz", "@id": "/files-fastq/4DNFIT29VIPN/", "display_title": "4DNFIT29VIPN.fastq.gz", "md5sum": "7587a4fe8ad5592d68c2d6e55f3c61ca", "file_classification": "raw file", "upload_key": "cb76851b-3dec-4a36-ae52-d0a3543192fa/4DNFIT29VIPN.fastq.gz", "accession": "4DNFIT29VIPN", "uuid": "cb76851b-3dec-4a36-ae52-d0a3543192fa", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 75726587, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "103336bb-b460-4017-8339-050a51bd87e9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1837343, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT29VIPN/fastqc_report.html", "@id": "/quality-metrics-fastqc/103336bb-b460-4017-8339-050a51bd87e9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDHKALWH/@@download/4DNFIDHKALWH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/435eecac-4ac0-4072-a583-0aa3ede65327/4DNFIDHKALWH.fastq.gz", "@id": "/files-fastq/4DNFIDHKALWH/", "display_title": "4DNFIDHKALWH.fastq.gz", "md5sum": "fed3b3b055c321842e98c960d969c2fa", "file_classification": "raw file", "upload_key": "435eecac-4ac0-4072-a583-0aa3ede65327/4DNFIDHKALWH.fastq.gz", "accession": "4DNFIDHKALWH", "uuid": "435eecac-4ac0-4072-a583-0aa3ede65327", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 359353588, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "968adc4a-42f4-4446-b3c2-fa2efb9f2692", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7343509, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDHKALWH/fastqc_report.html", "@id": "/quality-metrics-fastqc/968adc4a-42f4-4446-b3c2-fa2efb9f2692/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI76C9LE1/@@download/4DNFI76C9LE1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/45188b55-cf23-44af-9914-96532b4949ce/4DNFI76C9LE1.fastq.gz", "@id": "/files-fastq/4DNFI76C9LE1/", "display_title": "4DNFI76C9LE1.fastq.gz", "md5sum": "18878cc8c26407dd1019c988313935c1", "file_classification": "raw file", "upload_key": "45188b55-cf23-44af-9914-96532b4949ce/4DNFI76C9LE1.fastq.gz", "accession": "4DNFI76C9LE1", "uuid": "45188b55-cf23-44af-9914-96532b4949ce", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 243882950, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bb7ce6df-154e-4b48-b23b-2e8e3b24140b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5196933, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI76C9LE1/fastqc_report.html", "@id": "/quality-metrics-fastqc/bb7ce6df-154e-4b48-b23b-2e8e3b24140b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIN4IQWNI/@@download/4DNFIN4IQWNI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/86708cca-1f02-4966-bd3c-59e13e4c211e/4DNFIN4IQWNI.fastq.gz", "@id": "/files-fastq/4DNFIN4IQWNI/", "display_title": "4DNFIN4IQWNI.fastq.gz", "md5sum": "05b17de470268a01c34ba77c5919b03e", "file_classification": "raw file", "upload_key": "86708cca-1f02-4966-bd3c-59e13e4c211e/4DNFIN4IQWNI.fastq.gz", "accession": "4DNFIN4IQWNI", "uuid": "86708cca-1f02-4966-bd3c-59e13e4c211e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264822354, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dfb058ad-1c52-48c0-ad3f-86ed2bda5174", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5390552, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIN4IQWNI/fastqc_report.html", "@id": "/quality-metrics-fastqc/dfb058ad-1c52-48c0-ad3f-86ed2bda5174/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMU2JTC6/@@download/4DNFIMU2JTC6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/853fff82-5fc5-413c-a395-7646e01e50ac/4DNFIMU2JTC6.fastq.gz", "@id": "/files-fastq/4DNFIMU2JTC6/", "display_title": "4DNFIMU2JTC6.fastq.gz", "md5sum": "6ce73f23eb138c30b6d862d9a838b4b9", "file_classification": "raw file", "upload_key": "853fff82-5fc5-413c-a395-7646e01e50ac/4DNFIMU2JTC6.fastq.gz", "accession": "4DNFIMU2JTC6", "uuid": "853fff82-5fc5-413c-a395-7646e01e50ac", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 238706922, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4bbde28b-52e1-450f-8f9a-e665eba65ced", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4818032, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMU2JTC6/fastqc_report.html", "@id": "/quality-metrics-fastqc/4bbde28b-52e1-450f-8f9a-e665eba65ced/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICGEK29K/@@download/4DNFICGEK29K.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/69857131-eacc-4fb9-9b78-fa957649f550/4DNFICGEK29K.fastq.gz", "@id": "/files-fastq/4DNFICGEK29K/", "display_title": "4DNFICGEK29K.fastq.gz", "md5sum": "83b38d6e0918c5dfe81cc18409e3032f", "file_classification": "raw file", "upload_key": "69857131-eacc-4fb9-9b78-fa957649f550/4DNFICGEK29K.fastq.gz", "accession": "4DNFICGEK29K", "uuid": "69857131-eacc-4fb9-9b78-fa957649f550", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 241072848, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9bd98b9f-53f9-447b-9088-8bf0a4de240b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5113211, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICGEK29K/fastqc_report.html", "@id": "/quality-metrics-fastqc/9bd98b9f-53f9-447b-9088-8bf0a4de240b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHLTG77M/@@download/4DNFIHLTG77M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b76e0f29-33cc-4b7e-8667-f4a5987ce191/4DNFIHLTG77M.fastq.gz", "@id": "/files-fastq/4DNFIHLTG77M/", "display_title": "4DNFIHLTG77M.fastq.gz", "md5sum": "f6bdc2f4a3a9d11b49d02a835df23a88", "file_classification": "raw file", "upload_key": "b76e0f29-33cc-4b7e-8667-f4a5987ce191/4DNFIHLTG77M.fastq.gz", "accession": "4DNFIHLTG77M", "uuid": "b76e0f29-33cc-4b7e-8667-f4a5987ce191", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 389790857, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2ff8c191-cd98-4bb0-9812-d982fd081786", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8167340, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHLTG77M/fastqc_report.html", "@id": "/quality-metrics-fastqc/2ff8c191-cd98-4bb0-9812-d982fd081786/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIUQ5WUT2/@@download/4DNFIUQ5WUT2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bf893faa-2395-4889-a1e0-2d8e97202551/4DNFIUQ5WUT2.fastq.gz", "@id": "/files-fastq/4DNFIUQ5WUT2/", "display_title": "4DNFIUQ5WUT2.fastq.gz", "md5sum": "1111aef6c2c18b00fc8eefedd2dba9b3", "file_classification": "raw file", "upload_key": "bf893faa-2395-4889-a1e0-2d8e97202551/4DNFIUQ5WUT2.fastq.gz", "accession": "4DNFIUQ5WUT2", "uuid": "bf893faa-2395-4889-a1e0-2d8e97202551", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 417518101, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f21caa9d-0610-4b60-beb7-866cee62914e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8973819, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUQ5WUT2/fastqc_report.html", "@id": "/quality-metrics-fastqc/f21caa9d-0610-4b60-beb7-866cee62914e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFHN45BI/@@download/4DNFIFHN45BI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/76ee2f2c-49ed-4650-bd85-909a4b9f93dd/4DNFIFHN45BI.fastq.gz", "@id": "/files-fastq/4DNFIFHN45BI/", "display_title": "4DNFIFHN45BI.fastq.gz", "md5sum": "2379ad241aeb23121932a4c9569f9645", "file_classification": "raw file", "upload_key": "76ee2f2c-49ed-4650-bd85-909a4b9f93dd/4DNFIFHN45BI.fastq.gz", "accession": "4DNFIFHN45BI", "uuid": "76ee2f2c-49ed-4650-bd85-909a4b9f93dd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 350795078, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "20cbf39c-22c1-4c38-b407-2450e5bb4098", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7533237, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFHN45BI/fastqc_report.html", "@id": "/quality-metrics-fastqc/20cbf39c-22c1-4c38-b407-2450e5bb4098/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINP6MVM3/@@download/4DNFINP6MVM3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/21cf5a8f-c08a-4616-9459-c41c02dd4470/4DNFINP6MVM3.fastq.gz", "@id": "/files-fastq/4DNFINP6MVM3/", "display_title": "4DNFINP6MVM3.fastq.gz", "md5sum": "ac4b9e1089d2f47071d51474552a3280", "file_classification": "raw file", "upload_key": "21cf5a8f-c08a-4616-9459-c41c02dd4470/4DNFINP6MVM3.fastq.gz", "accession": "4DNFINP6MVM3", "uuid": "21cf5a8f-c08a-4616-9459-c41c02dd4470", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 385822189, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "10815950-b9ca-4729-bf24-dfb7a69e861e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8284553, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINP6MVM3/fastqc_report.html", "@id": "/quality-metrics-fastqc/10815950-b9ca-4729-bf24-dfb7a69e861e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISR5EYPH/@@download/4DNFISR5EYPH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ec8cc440-7be7-4b6c-b59f-f51c71059918/4DNFISR5EYPH.fastq.gz", "@id": "/files-fastq/4DNFISR5EYPH/", "display_title": "4DNFISR5EYPH.fastq.gz", "md5sum": "eb056c2fef5ad23039e57b39f1d51058", "file_classification": "raw file", "upload_key": "ec8cc440-7be7-4b6c-b59f-f51c71059918/4DNFISR5EYPH.fastq.gz", "accession": "4DNFISR5EYPH", "uuid": "ec8cc440-7be7-4b6c-b59f-f51c71059918", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 403015048, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "61e89262-1d38-4062-a380-9bd9c1cbf69c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8518268, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISR5EYPH/fastqc_report.html", "@id": "/quality-metrics-fastqc/61e89262-1d38-4062-a380-9bd9c1cbf69c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI26F9N6Y/@@download/4DNFI26F9N6Y.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4e10974d-32e6-4add-8203-a23e5524b653/4DNFI26F9N6Y.fastq.gz", "@id": "/files-fastq/4DNFI26F9N6Y/", "display_title": "4DNFI26F9N6Y.fastq.gz", "md5sum": "b9905f4fc22252f9158e14010eec8cad", "file_classification": "raw file", "upload_key": "4e10974d-32e6-4add-8203-a23e5524b653/4DNFI26F9N6Y.fastq.gz", "accession": "4DNFI26F9N6Y", "uuid": "4e10974d-32e6-4add-8203-a23e5524b653", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 409283089, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "08d8e791-7af9-499d-a447-f3190cc645bf", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8698343, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI26F9N6Y/fastqc_report.html", "@id": "/quality-metrics-fastqc/08d8e791-7af9-499d-a447-f3190cc645bf/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIID96QQV/@@download/4DNFIID96QQV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/43af0c42-a411-4f7e-9868-c5fea88d1d6e/4DNFIID96QQV.fastq.gz", "@id": "/files-fastq/4DNFIID96QQV/", "display_title": "4DNFIID96QQV.fastq.gz", "md5sum": "e0771bc1fd1997e9e2400c7a8a11d1ac", "file_classification": "raw file", "upload_key": "43af0c42-a411-4f7e-9868-c5fea88d1d6e/4DNFIID96QQV.fastq.gz", "accession": "4DNFIID96QQV", "uuid": "43af0c42-a411-4f7e-9868-c5fea88d1d6e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 398097858, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e13649b9-5845-4e35-bb5a-dfd1a775b536", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8481956, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIID96QQV/fastqc_report.html", "@id": "/quality-metrics-fastqc/e13649b9-5845-4e35-bb5a-dfd1a775b536/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDCN3WK6/@@download/4DNFIDCN3WK6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/28d12a5a-7c6a-4c29-aa36-2ef8b190e750/4DNFIDCN3WK6.fastq.gz", "@id": "/files-fastq/4DNFIDCN3WK6/", "display_title": "4DNFIDCN3WK6.fastq.gz", "md5sum": "dc5b20942abb95ba42ecab1bd1a3bc0d", "file_classification": "raw file", "upload_key": "28d12a5a-7c6a-4c29-aa36-2ef8b190e750/4DNFIDCN3WK6.fastq.gz", "accession": "4DNFIDCN3WK6", "uuid": "28d12a5a-7c6a-4c29-aa36-2ef8b190e750", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 417186351, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9617551c-d6c5-4fb5-b575-08584520eadb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8976912, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDCN3WK6/fastqc_report.html", "@id": "/quality-metrics-fastqc/9617551c-d6c5-4fb5-b575-08584520eadb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI24KUO5D/@@download/4DNFI24KUO5D.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bedd0519-5110-40d3-93dd-d296d50cd067/4DNFI24KUO5D.fastq.gz", "@id": "/files-fastq/4DNFI24KUO5D/", "display_title": "4DNFI24KUO5D.fastq.gz", "md5sum": "9c964b6851b12092ce55e0e63cad8baf", "file_classification": "raw file", "upload_key": "bedd0519-5110-40d3-93dd-d296d50cd067/4DNFI24KUO5D.fastq.gz", "accession": "4DNFI24KUO5D", "uuid": "bedd0519-5110-40d3-93dd-d296d50cd067", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 400259837, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "72d3f063-9661-461c-ae14-42f0b27dcd26", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8468756, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI24KUO5D/fastqc_report.html", "@id": "/quality-metrics-fastqc/72d3f063-9661-461c-ae14-42f0b27dcd26/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZ6QERKK/@@download/4DNFIZ6QERKK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/33f35ab3-a605-49c3-aeda-6285cb5902e1/4DNFIZ6QERKK.fastq.gz", "@id": "/files-fastq/4DNFIZ6QERKK/", "display_title": "4DNFIZ6QERKK.fastq.gz", "md5sum": "dcd906cfd0c72bc38524ea9ed3809be9", "file_classification": "raw file", "upload_key": "33f35ab3-a605-49c3-aeda-6285cb5902e1/4DNFIZ6QERKK.fastq.gz", "accession": "4DNFIZ6QERKK", "uuid": "33f35ab3-a605-49c3-aeda-6285cb5902e1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 487890494, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e00078bb-f477-425f-83c5-caf5f79786c9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 10352162, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZ6QERKK/fastqc_report.html", "@id": "/quality-metrics-fastqc/e00078bb-f477-425f-83c5-caf5f79786c9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILJS1W5Z/@@download/4DNFILJS1W5Z.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/20af0a4f-dc74-4064-90a6-b7f72c92526d/4DNFILJS1W5Z.fastq.gz", "@id": "/files-fastq/4DNFILJS1W5Z/", "display_title": "4DNFILJS1W5Z.fastq.gz", "md5sum": "cc1c108017e9025fb566ce87e29cfdc7", "file_classification": "raw file", "upload_key": "20af0a4f-dc74-4064-90a6-b7f72c92526d/4DNFILJS1W5Z.fastq.gz", "accession": "4DNFILJS1W5Z", "uuid": "20af0a4f-dc74-4064-90a6-b7f72c92526d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 462295189, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "38640504-3f39-461e-9486-10cc5f3b7295", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 10020473, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILJS1W5Z/fastqc_report.html", "@id": "/quality-metrics-fastqc/38640504-3f39-461e-9486-10cc5f3b7295/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9H4TYD5/@@download/4DNFI9H4TYD5.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cc0761df-22c5-438b-aefc-01836ee5253e/4DNFI9H4TYD5.fastq.gz", "@id": "/files-fastq/4DNFI9H4TYD5/", "display_title": "4DNFI9H4TYD5.fastq.gz", "md5sum": "77d6842acbfa1bccc944ce17716ea38a", "file_classification": "raw file", "upload_key": "cc0761df-22c5-438b-aefc-01836ee5253e/4DNFI9H4TYD5.fastq.gz", "accession": "4DNFI9H4TYD5", "uuid": "cc0761df-22c5-438b-aefc-01836ee5253e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 404225171, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1b7cc4b5-f9c0-424c-94ed-155dec5f6312", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8612772, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9H4TYD5/fastqc_report.html", "@id": "/quality-metrics-fastqc/1b7cc4b5-f9c0-424c-94ed-155dec5f6312/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHUJBSHR/@@download/4DNFIHUJBSHR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c7b93993-12e2-4ef2-9df5-fac06c0128cb/4DNFIHUJBSHR.fastq.gz", "@id": "/files-fastq/4DNFIHUJBSHR/", "display_title": "4DNFIHUJBSHR.fastq.gz", "md5sum": "c55a661729175e2898f08fc9820ac2b2", "file_classification": "raw file", "upload_key": "c7b93993-12e2-4ef2-9df5-fac06c0128cb/4DNFIHUJBSHR.fastq.gz", "accession": "4DNFIHUJBSHR", "uuid": "c7b93993-12e2-4ef2-9df5-fac06c0128cb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 278685576, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "12eeeef9-6475-45a8-853e-500b7f8f9fff", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5867815, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHUJBSHR/fastqc_report.html", "@id": "/quality-metrics-fastqc/12eeeef9-6475-45a8-853e-500b7f8f9fff/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITZ6KT1L/@@download/4DNFITZ6KT1L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/19e98a24-289e-4b1e-bb8e-0daa8bf6ca99/4DNFITZ6KT1L.fastq.gz", "@id": "/files-fastq/4DNFITZ6KT1L/", "display_title": "4DNFITZ6KT1L.fastq.gz", "md5sum": "7dedde2c2636b31720e9cd1199f27dc3", "file_classification": "raw file", "upload_key": "19e98a24-289e-4b1e-bb8e-0daa8bf6ca99/4DNFITZ6KT1L.fastq.gz", "accession": "4DNFITZ6KT1L", "uuid": "19e98a24-289e-4b1e-bb8e-0daa8bf6ca99", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 403486615, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b6b8b868-361f-4130-8465-d70fede88ad8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8560855, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITZ6KT1L/fastqc_report.html", "@id": "/quality-metrics-fastqc/b6b8b868-361f-4130-8465-d70fede88ad8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI87C6JPM/@@download/4DNFI87C6JPM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5abe8a2c-a8a7-43d4-b42a-b0836fd4a5ef/4DNFI87C6JPM.fastq.gz", "@id": "/files-fastq/4DNFI87C6JPM/", "display_title": "4DNFI87C6JPM.fastq.gz", "md5sum": "359d75c7ba2b01833b4214a2a6373b2c", "file_classification": "raw file", "upload_key": "5abe8a2c-a8a7-43d4-b42a-b0836fd4a5ef/4DNFI87C6JPM.fastq.gz", "accession": "4DNFI87C6JPM", "uuid": "5abe8a2c-a8a7-43d4-b42a-b0836fd4a5ef", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 340436883, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b9b27ac1-d002-4753-af73-47aaf55051b4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7201770, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI87C6JPM/fastqc_report.html", "@id": "/quality-metrics-fastqc/b9b27ac1-d002-4753-af73-47aaf55051b4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIA8M2OYX/@@download/4DNFIA8M2OYX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0606b1a2-27be-4f39-a1d3-c5dae5a54f57/4DNFIA8M2OYX.fastq.gz", "@id": "/files-fastq/4DNFIA8M2OYX/", "display_title": "4DNFIA8M2OYX.fastq.gz", "md5sum": "225a3378813beea8046ee4908cc006ae", "file_classification": "raw file", "upload_key": "0606b1a2-27be-4f39-a1d3-c5dae5a54f57/4DNFIA8M2OYX.fastq.gz", "accession": "4DNFIA8M2OYX", "uuid": "0606b1a2-27be-4f39-a1d3-c5dae5a54f57", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 311940782, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "23779679-8d1e-4925-a6af-017ba569c2cd", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6675064, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA8M2OYX/fastqc_report.html", "@id": "/quality-metrics-fastqc/23779679-8d1e-4925-a6af-017ba569c2cd/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI15Y9VFE/@@download/4DNFI15Y9VFE.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/040c548c-be5a-4274-bfa6-e3c9e7f65118/4DNFI15Y9VFE.fastq.gz", "@id": "/files-fastq/4DNFI15Y9VFE/", "display_title": "4DNFI15Y9VFE.fastq.gz", "md5sum": "da1ff0db5c6e0d39bcdef26e6d913f50", "file_classification": "raw file", "upload_key": "040c548c-be5a-4274-bfa6-e3c9e7f65118/4DNFI15Y9VFE.fastq.gz", "accession": "4DNFI15Y9VFE", "uuid": "040c548c-be5a-4274-bfa6-e3c9e7f65118", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 392446140, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c4b0b2f1-a02c-48a8-ae55-767a907c0bb3", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8267736, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI15Y9VFE/fastqc_report.html", "@id": "/quality-metrics-fastqc/c4b0b2f1-a02c-48a8-ae55-767a907c0bb3/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITSLVP7O/@@download/4DNFITSLVP7O.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/df5caf42-0f35-45f8-87c1-b9e543393020/4DNFITSLVP7O.fastq.gz", "@id": "/files-fastq/4DNFITSLVP7O/", "display_title": "4DNFITSLVP7O.fastq.gz", "md5sum": "a13a04ed0a7db3dc5e6cfc01c662a813", "file_classification": "raw file", "upload_key": "df5caf42-0f35-45f8-87c1-b9e543393020/4DNFITSLVP7O.fastq.gz", "accession": "4DNFITSLVP7O", "uuid": "df5caf42-0f35-45f8-87c1-b9e543393020", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 408957638, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c002629d-689f-44f8-9685-62191e19a1a5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8676337, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITSLVP7O/fastqc_report.html", "@id": "/quality-metrics-fastqc/c002629d-689f-44f8-9685-62191e19a1a5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIASKRZQG/@@download/4DNFIASKRZQG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fe78dc42-e7d7-499f-a055-85923ba9ae7f/4DNFIASKRZQG.fastq.gz", "@id": "/files-fastq/4DNFIASKRZQG/", "display_title": "4DNFIASKRZQG.fastq.gz", "md5sum": "fdbb7642f4dddbe412d631ae29acaa4a", "file_classification": "raw file", "upload_key": "fe78dc42-e7d7-499f-a055-85923ba9ae7f/4DNFIASKRZQG.fastq.gz", "accession": "4DNFIASKRZQG", "uuid": "fe78dc42-e7d7-499f-a055-85923ba9ae7f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 363542813, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0090dcfb-3dfb-4e42-af88-ac585c603340", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7837288, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIASKRZQG/fastqc_report.html", "@id": "/quality-metrics-fastqc/0090dcfb-3dfb-4e42-af88-ac585c603340/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZPYYJSZ/@@download/4DNFIZPYYJSZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/96f18258-d627-438f-9386-21a42c7999e4/4DNFIZPYYJSZ.fastq.gz", "@id": "/files-fastq/4DNFIZPYYJSZ/", "display_title": "4DNFIZPYYJSZ.fastq.gz", "md5sum": "daee34815227d8a54c56e3db7a90fe0c", "file_classification": "raw file", "upload_key": "96f18258-d627-438f-9386-21a42c7999e4/4DNFIZPYYJSZ.fastq.gz", "accession": "4DNFIZPYYJSZ", "uuid": "96f18258-d627-438f-9386-21a42c7999e4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 386716039, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "43a1b49f-7e6e-4611-a287-ce20daa83e5c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8392886, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZPYYJSZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/43a1b49f-7e6e-4611-a287-ce20daa83e5c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVXC1ZSA/@@download/4DNFIVXC1ZSA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bde79d35-9155-4d58-8943-083d488b7d84/4DNFIVXC1ZSA.fastq.gz", "@id": "/files-fastq/4DNFIVXC1ZSA/", "display_title": "4DNFIVXC1ZSA.fastq.gz", "md5sum": "8419690634754e5eb30005551f009ea6", "file_classification": "raw file", "upload_key": "bde79d35-9155-4d58-8943-083d488b7d84/4DNFIVXC1ZSA.fastq.gz", "accession": "4DNFIVXC1ZSA", "uuid": "bde79d35-9155-4d58-8943-083d488b7d84", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 351353672, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7e9133cb-469d-48c6-b97c-13a73446b9a8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7421781, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVXC1ZSA/fastqc_report.html", "@id": "/quality-metrics-fastqc/7e9133cb-469d-48c6-b97c-13a73446b9a8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFFQAS2Y/@@download/4DNFIFFQAS2Y.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/84cf39c8-8627-474d-b64d-f948626272b7/4DNFIFFQAS2Y.fastq.gz", "@id": "/files-fastq/4DNFIFFQAS2Y/", "display_title": "4DNFIFFQAS2Y.fastq.gz", "md5sum": "4227eef39a6a2b33a6930d96b92b4905", "file_classification": "raw file", "upload_key": "84cf39c8-8627-474d-b64d-f948626272b7/4DNFIFFQAS2Y.fastq.gz", "accession": "4DNFIFFQAS2Y", "uuid": "84cf39c8-8627-474d-b64d-f948626272b7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 428030571, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c9b50b6f-0ef7-4734-900a-78f864856557", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 9122233, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFFQAS2Y/fastqc_report.html", "@id": "/quality-metrics-fastqc/c9b50b6f-0ef7-4734-900a-78f864856557/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIA4NV6Z7/@@download/4DNFIA4NV6Z7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7e329f4e-4b85-4abc-bd42-2af10d138148/4DNFIA4NV6Z7.fastq.gz", "@id": "/files-fastq/4DNFIA4NV6Z7/", "display_title": "4DNFIA4NV6Z7.fastq.gz", "md5sum": "0774d0cb169e3ddd38a26d68911c430d", "file_classification": "raw file", "upload_key": "7e329f4e-4b85-4abc-bd42-2af10d138148/4DNFIA4NV6Z7.fastq.gz", "accession": "4DNFIA4NV6Z7", "uuid": "7e329f4e-4b85-4abc-bd42-2af10d138148", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 410090848, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ef55b169-9d2c-419e-a234-3d54ec1bdd12", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8892023, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA4NV6Z7/fastqc_report.html", "@id": "/quality-metrics-fastqc/ef55b169-9d2c-419e-a234-3d54ec1bdd12/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQGK4LBK/@@download/4DNFIQGK4LBK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1503b2cd-b52a-4644-a7ca-29318cfe81e0/4DNFIQGK4LBK.fastq.gz", "@id": "/files-fastq/4DNFIQGK4LBK/", "display_title": "4DNFIQGK4LBK.fastq.gz", "md5sum": "35f84c75d73f5eb0a7958ff02b7f7bc3", "file_classification": "raw file", "upload_key": "1503b2cd-b52a-4644-a7ca-29318cfe81e0/4DNFIQGK4LBK.fastq.gz", "accession": "4DNFIQGK4LBK", "uuid": "1503b2cd-b52a-4644-a7ca-29318cfe81e0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 532742462, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3ba8af51-570c-48aa-a965-f825923d3903", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 11628388, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQGK4LBK/fastqc_report.html", "@id": "/quality-metrics-fastqc/3ba8af51-570c-48aa-a965-f825923d3903/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIS7H7TDJ/@@download/4DNFIS7H7TDJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6dcb8556-a117-48eb-8975-0e850d402448/4DNFIS7H7TDJ.fastq.gz", "@id": "/files-fastq/4DNFIS7H7TDJ/", "display_title": "4DNFIS7H7TDJ.fastq.gz", "md5sum": "4da08d73073eae6a31c73577340b4a29", "file_classification": "raw file", "upload_key": "6dcb8556-a117-48eb-8975-0e850d402448/4DNFIS7H7TDJ.fastq.gz", "accession": "4DNFIS7H7TDJ", "uuid": "6dcb8556-a117-48eb-8975-0e850d402448", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 388833019, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "75a7dace-9974-4a2d-9ccc-500c7e801421", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8233964, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIS7H7TDJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/75a7dace-9974-4a2d-9ccc-500c7e801421/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIU8ST9A/@@download/4DNFIIU8ST9A.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/19099ea7-4d37-494b-b575-070fd284c532/4DNFIIU8ST9A.fastq.gz", "@id": "/files-fastq/4DNFIIU8ST9A/", "display_title": "4DNFIIU8ST9A.fastq.gz", "md5sum": "cf87750e1c7b8edf15b2bd20a319325c", "file_classification": "raw file", "upload_key": "19099ea7-4d37-494b-b575-070fd284c532/4DNFIIU8ST9A.fastq.gz", "accession": "4DNFIIU8ST9A", "uuid": "19099ea7-4d37-494b-b575-070fd284c532", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 484275054, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b7f3f0f1-7490-415d-82db-c2701567b93c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 10282789, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIU8ST9A/fastqc_report.html", "@id": "/quality-metrics-fastqc/b7f3f0f1-7490-415d-82db-c2701567b93c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQFB5DDL/@@download/4DNFIQFB5DDL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c2e1d39-51f7-488a-bccb-6830fafa8a50/4DNFIQFB5DDL.fastq.gz", "@id": "/files-fastq/4DNFIQFB5DDL/", "display_title": "4DNFIQFB5DDL.fastq.gz", "md5sum": "a3a0257f40710040ae7864f3b91e3b98", "file_classification": "raw file", "upload_key": "0c2e1d39-51f7-488a-bccb-6830fafa8a50/4DNFIQFB5DDL.fastq.gz", "accession": "4DNFIQFB5DDL", "uuid": "0c2e1d39-51f7-488a-bccb-6830fafa8a50", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 401279523, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "96e278a3-b19f-4c68-a640-f2aec3e54f3e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8619153, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQFB5DDL/fastqc_report.html", "@id": "/quality-metrics-fastqc/96e278a3-b19f-4c68-a640-f2aec3e54f3e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIORYMXPT/@@download/4DNFIORYMXPT.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/21f43998-a520-4663-9a61-d6fdd5329d0a/4DNFIORYMXPT.fastq.gz", "@id": "/files-fastq/4DNFIORYMXPT/", "display_title": "4DNFIORYMXPT.fastq.gz", "md5sum": "fafeb6ef08c0c95849765f828a3874a8", "file_classification": "raw file", "upload_key": "21f43998-a520-4663-9a61-d6fdd5329d0a/4DNFIORYMXPT.fastq.gz", "accession": "4DNFIORYMXPT", "uuid": "21f43998-a520-4663-9a61-d6fdd5329d0a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 401229387, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cedf5799-faa0-4698-9f96-7f72e4912770", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 8490653, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIORYMXPT/fastqc_report.html", "@id": "/quality-metrics-fastqc/cedf5799-faa0-4698-9f96-7f72e4912770/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGPV8OIH/@@download/4DNFIGPV8OIH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bfa15108-b3d7-487f-8c81-d36c035ad326/4DNFIGPV8OIH.fastq.gz", "@id": "/files-fastq/4DNFIGPV8OIH/", "display_title": "4DNFIGPV8OIH.fastq.gz", "md5sum": "e9e56981efce632885f2a5a0a0451aae", "file_classification": "raw file", "upload_key": "bfa15108-b3d7-487f-8c81-d36c035ad326/4DNFIGPV8OIH.fastq.gz", "accession": "4DNFIGPV8OIH", "uuid": "bfa15108-b3d7-487f-8c81-d36c035ad326", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 476139321, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2b71894d-2281-42ea-83eb-0e7dd5fbb08d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 10133955, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGPV8OIH/fastqc_report.html", "@id": "/quality-metrics-fastqc/2b71894d-2281-42ea-83eb-0e7dd5fbb08d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXQU15ZS/@@download/4DNFIXQU15ZS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bbd350e7-4772-4662-b441-d93a31af2357/4DNFIXQU15ZS.fastq.gz", "@id": "/files-fastq/4DNFIXQU15ZS/", "display_title": "4DNFIXQU15ZS.fastq.gz", "md5sum": "280e8fb38b97db3c75b99a39e3b559e0", "file_classification": "raw file", "upload_key": "bbd350e7-4772-4662-b441-d93a31af2357/4DNFIXQU15ZS.fastq.gz", "accession": "4DNFIXQU15ZS", "uuid": "bbd350e7-4772-4662-b441-d93a31af2357", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 451535513, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4c86c904-ac8d-413c-a477-a8fcea71c3c8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 9757409, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXQU15ZS/fastqc_report.html", "@id": "/quality-metrics-fastqc/4c86c904-ac8d-413c-a477-a8fcea71c3c8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1UHUDBP/@@download/4DNFI1UHUDBP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8cd33eb8-771a-446f-8651-9df59951eccb/4DNFI1UHUDBP.fastq.gz", "@id": "/files-fastq/4DNFI1UHUDBP/", "display_title": "4DNFI1UHUDBP.fastq.gz", "md5sum": "fc9ec7fd29b3c2f5f415567b1d56b1a7", "file_classification": "raw file", "upload_key": "8cd33eb8-771a-446f-8651-9df59951eccb/4DNFI1UHUDBP.fastq.gz", "accession": "4DNFI1UHUDBP", "uuid": "8cd33eb8-771a-446f-8651-9df59951eccb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 205366656, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3bafbc85-d010-40fe-a17a-f2aa7fa09e5a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4232323, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1UHUDBP/fastqc_report.html", "@id": "/quality-metrics-fastqc/3bafbc85-d010-40fe-a17a-f2aa7fa09e5a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIAGRASOM/@@download/4DNFIAGRASOM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8f8489a2-66e6-4614-9f34-d31e1174c02c/4DNFIAGRASOM.fastq.gz", "@id": "/files-fastq/4DNFIAGRASOM/", "display_title": "4DNFIAGRASOM.fastq.gz", "md5sum": "ca9ac89cb96dc90215eb80fcb762143f", "file_classification": "raw file", "upload_key": "8f8489a2-66e6-4614-9f34-d31e1174c02c/4DNFIAGRASOM.fastq.gz", "accession": "4DNFIAGRASOM", "uuid": "8f8489a2-66e6-4614-9f34-d31e1174c02c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 237673170, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "14a48ef6-e7d7-47ac-8142-5ef48546172d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4937581, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAGRASOM/fastqc_report.html", "@id": "/quality-metrics-fastqc/14a48ef6-e7d7-47ac-8142-5ef48546172d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIP22ABIK/@@download/4DNFIP22ABIK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/942f7982-b6bf-4522-8d03-27c11750b5bc/4DNFIP22ABIK.fastq.gz", "@id": "/files-fastq/4DNFIP22ABIK/", "display_title": "4DNFIP22ABIK.fastq.gz", "md5sum": "d19ac4fd429a904a37e05676d2b2d1d2", "file_classification": "raw file", "upload_key": "942f7982-b6bf-4522-8d03-27c11750b5bc/4DNFIP22ABIK.fastq.gz", "accession": "4DNFIP22ABIK", "uuid": "942f7982-b6bf-4522-8d03-27c11750b5bc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 247091660, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7ca7c318-b177-4251-80f4-fad2a2bfd059", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5118803, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIP22ABIK/fastqc_report.html", "@id": "/quality-metrics-fastqc/7ca7c318-b177-4251-80f4-fad2a2bfd059/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9RN3AC4/@@download/4DNFI9RN3AC4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6b7cbe4d-ece0-4061-b93a-33fc6ea8b6f0/4DNFI9RN3AC4.fastq.gz", "@id": "/files-fastq/4DNFI9RN3AC4/", "display_title": "4DNFI9RN3AC4.fastq.gz", "md5sum": "63605460135fc96e78e64e658e058c3a", "file_classification": "raw file", "upload_key": "6b7cbe4d-ece0-4061-b93a-33fc6ea8b6f0/4DNFI9RN3AC4.fastq.gz", "accession": "4DNFI9RN3AC4", "uuid": "6b7cbe4d-ece0-4061-b93a-33fc6ea8b6f0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233623999, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3a8b74af-6c89-47a5-8e49-5c5d4b80837f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4873283, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9RN3AC4/fastqc_report.html", "@id": "/quality-metrics-fastqc/3a8b74af-6c89-47a5-8e49-5c5d4b80837f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMRCI99Q/@@download/4DNFIMRCI99Q.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f0ea088d-0405-49a7-aab2-dd7fae442312/4DNFIMRCI99Q.fastq.gz", "@id": "/files-fastq/4DNFIMRCI99Q/", "display_title": "4DNFIMRCI99Q.fastq.gz", "md5sum": "2ba1db35989e8119321838cc061914a2", "file_classification": "raw file", "upload_key": "f0ea088d-0405-49a7-aab2-dd7fae442312/4DNFIMRCI99Q.fastq.gz", "accession": "4DNFIMRCI99Q", "uuid": "f0ea088d-0405-49a7-aab2-dd7fae442312", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 253124741, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "674eddf9-43d2-40bc-89bd-edb3fb18a896", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5348939, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMRCI99Q/fastqc_report.html", "@id": "/quality-metrics-fastqc/674eddf9-43d2-40bc-89bd-edb3fb18a896/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB65VM1P/@@download/4DNFIB65VM1P.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d322eb66-2fd3-4427-b575-8749cfd83669/4DNFIB65VM1P.fastq.gz", "@id": "/files-fastq/4DNFIB65VM1P/", "display_title": "4DNFIB65VM1P.fastq.gz", "md5sum": "fc9e4a5afc56260443fa7ad4caf1b641", "file_classification": "raw file", "upload_key": "d322eb66-2fd3-4427-b575-8749cfd83669/4DNFIB65VM1P.fastq.gz", "accession": "4DNFIB65VM1P", "uuid": "d322eb66-2fd3-4427-b575-8749cfd83669", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 205926053, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "88fda83b-9d48-46a3-8d98-1c1d2cd0552b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4228774, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB65VM1P/fastqc_report.html", "@id": "/quality-metrics-fastqc/88fda83b-9d48-46a3-8d98-1c1d2cd0552b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMCNHU3X/@@download/4DNFIMCNHU3X.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5d10e1c3-5b54-44db-ae19-e0a09df4f397/4DNFIMCNHU3X.fastq.gz", "@id": "/files-fastq/4DNFIMCNHU3X/", "display_title": "4DNFIMCNHU3X.fastq.gz", "md5sum": "caf9768742b41ba870da88a6af827b6e", "file_classification": "raw file", "upload_key": "5d10e1c3-5b54-44db-ae19-e0a09df4f397/4DNFIMCNHU3X.fastq.gz", "accession": "4DNFIMCNHU3X", "uuid": "5d10e1c3-5b54-44db-ae19-e0a09df4f397", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 268888168, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a527d0c1-2d4e-40f1-8534-f18ad1a1e4ba", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5581925, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMCNHU3X/fastqc_report.html", "@id": "/quality-metrics-fastqc/a527d0c1-2d4e-40f1-8534-f18ad1a1e4ba/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXRDLVPU/@@download/4DNFIXRDLVPU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/44d0f7aa-649b-4ab9-89c4-8caa59f639c5/4DNFIXRDLVPU.fastq.gz", "@id": "/files-fastq/4DNFIXRDLVPU/", "display_title": "4DNFIXRDLVPU.fastq.gz", "md5sum": "a67ca91a209af03fd944ead92ce2ddcd", "file_classification": "raw file", "upload_key": "44d0f7aa-649b-4ab9-89c4-8caa59f639c5/4DNFIXRDLVPU.fastq.gz", "accession": "4DNFIXRDLVPU", "uuid": "44d0f7aa-649b-4ab9-89c4-8caa59f639c5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 263730860, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ea3e744b-7a4a-43c2-86c2-d8a3b13d0075", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5522857, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXRDLVPU/fastqc_report.html", "@id": "/quality-metrics-fastqc/ea3e744b-7a4a-43c2-86c2-d8a3b13d0075/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINI7BSOM/@@download/4DNFINI7BSOM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4c12934e-426a-4c99-9dec-5cdbd2e2515c/4DNFINI7BSOM.fastq.gz", "@id": "/files-fastq/4DNFINI7BSOM/", "display_title": "4DNFINI7BSOM.fastq.gz", "md5sum": "766fc79028cc0238638f8b20759c3867", "file_classification": "raw file", "upload_key": "4c12934e-426a-4c99-9dec-5cdbd2e2515c/4DNFINI7BSOM.fastq.gz", "accession": "4DNFINI7BSOM", "uuid": "4c12934e-426a-4c99-9dec-5cdbd2e2515c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 261468081, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fd338e12-4050-4f4d-b669-50324d7806ac", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5517178, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINI7BSOM/fastqc_report.html", "@id": "/quality-metrics-fastqc/fd338e12-4050-4f4d-b669-50324d7806ac/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFNKOF4R/@@download/4DNFIFNKOF4R.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/974be999-ca8b-4edf-8f09-1315f5296a55/4DNFIFNKOF4R.fastq.gz", "@id": "/files-fastq/4DNFIFNKOF4R/", "display_title": "4DNFIFNKOF4R.fastq.gz", "md5sum": "544a879ccab9a9e02669e6e19e42d41b", "file_classification": "raw file", "upload_key": "974be999-ca8b-4edf-8f09-1315f5296a55/4DNFIFNKOF4R.fastq.gz", "accession": "4DNFIFNKOF4R", "uuid": "974be999-ca8b-4edf-8f09-1315f5296a55", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 249420430, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6f294d68-4f26-4c98-a12a-b743acb80e05", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5308732, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFNKOF4R/fastqc_report.html", "@id": "/quality-metrics-fastqc/6f294d68-4f26-4c98-a12a-b743acb80e05/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXB6BCUO/@@download/4DNFIXB6BCUO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/83dd4343-71ae-4eba-bf55-afb9984aefe2/4DNFIXB6BCUO.fastq.gz", "@id": "/files-fastq/4DNFIXB6BCUO/", "display_title": "4DNFIXB6BCUO.fastq.gz", "md5sum": "de9da2d1f8713316d90920f8fef0b65c", "file_classification": "raw file", "upload_key": "83dd4343-71ae-4eba-bf55-afb9984aefe2/4DNFIXB6BCUO.fastq.gz", "accession": "4DNFIXB6BCUO", "uuid": "83dd4343-71ae-4eba-bf55-afb9984aefe2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 226861393, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "910526b5-450b-441c-aaf9-39d4f37159b4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4675577, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXB6BCUO/fastqc_report.html", "@id": "/quality-metrics-fastqc/910526b5-450b-441c-aaf9-39d4f37159b4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBNWH276/@@download/4DNFIBNWH276.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b0372faa-445f-4c95-a7a6-f170d56e16b7/4DNFIBNWH276.fastq.gz", "@id": "/files-fastq/4DNFIBNWH276/", "display_title": "4DNFIBNWH276.fastq.gz", "md5sum": "6ecd6c16576128159697af0ba689b4f4", "file_classification": "raw file", "upload_key": "b0372faa-445f-4c95-a7a6-f170d56e16b7/4DNFIBNWH276.fastq.gz", "accession": "4DNFIBNWH276", "uuid": "b0372faa-445f-4c95-a7a6-f170d56e16b7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 229632035, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "65c057ef-e3fc-4814-8533-43fdc146fbc8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4734078, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBNWH276/fastqc_report.html", "@id": "/quality-metrics-fastqc/65c057ef-e3fc-4814-8533-43fdc146fbc8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB3YV135/@@download/4DNFIB3YV135.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6513d6bc-3c4d-48d8-991b-1d96ea9287c6/4DNFIB3YV135.fastq.gz", "@id": "/files-fastq/4DNFIB3YV135/", "display_title": "4DNFIB3YV135.fastq.gz", "md5sum": "ed30016a1c78e01239fb923a74ceed8e", "file_classification": "raw file", "upload_key": "6513d6bc-3c4d-48d8-991b-1d96ea9287c6/4DNFIB3YV135.fastq.gz", "accession": "4DNFIB3YV135", "uuid": "6513d6bc-3c4d-48d8-991b-1d96ea9287c6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 252618253, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "01b927cb-3633-4c9e-90f2-32179b6309a9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5128145, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB3YV135/fastqc_report.html", "@id": "/quality-metrics-fastqc/01b927cb-3633-4c9e-90f2-32179b6309a9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB8SCISB/@@download/4DNFIB8SCISB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/fd844286-2933-4534-a7f5-b875efe197cc/4DNFIB8SCISB.fastq.gz", "@id": "/files-fastq/4DNFIB8SCISB/", "display_title": "4DNFIB8SCISB.fastq.gz", "md5sum": "c3f1981b3614242ab6d1b8c983890b6c", "file_classification": "raw file", "upload_key": "fd844286-2933-4534-a7f5-b875efe197cc/4DNFIB8SCISB.fastq.gz", "accession": "4DNFIB8SCISB", "uuid": "fd844286-2933-4534-a7f5-b875efe197cc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235621670, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bb756405-5019-47b0-9747-ac1386049b43", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4876401, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB8SCISB/fastqc_report.html", "@id": "/quality-metrics-fastqc/bb756405-5019-47b0-9747-ac1386049b43/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIU94AFCW/@@download/4DNFIU94AFCW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/333286fc-8df0-446e-b0d6-1a4b0891101e/4DNFIU94AFCW.fastq.gz", "@id": "/files-fastq/4DNFIU94AFCW/", "display_title": "4DNFIU94AFCW.fastq.gz", "md5sum": "d1ca9a51d365bd23c7ce6663d4009c5e", "file_classification": "raw file", "upload_key": "333286fc-8df0-446e-b0d6-1a4b0891101e/4DNFIU94AFCW.fastq.gz", "accession": "4DNFIU94AFCW", "uuid": "333286fc-8df0-446e-b0d6-1a4b0891101e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233052567, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7ced090e-d534-4f42-a477-f5466f799472", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4925920, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIU94AFCW/fastqc_report.html", "@id": "/quality-metrics-fastqc/7ced090e-d534-4f42-a477-f5466f799472/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIK2D6MCP/@@download/4DNFIK2D6MCP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bf572233-befc-40ec-83d8-f56e25e29fd0/4DNFIK2D6MCP.fastq.gz", "@id": "/files-fastq/4DNFIK2D6MCP/", "display_title": "4DNFIK2D6MCP.fastq.gz", "md5sum": "2b2f46663481b61fab0a1b205558ba28", "file_classification": "raw file", "upload_key": "bf572233-befc-40ec-83d8-f56e25e29fd0/4DNFIK2D6MCP.fastq.gz", "accession": "4DNFIK2D6MCP", "uuid": "bf572233-befc-40ec-83d8-f56e25e29fd0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233387396, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "03c93c63-6e74-4c55-931d-66044d6c6f7d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4822771, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK2D6MCP/fastqc_report.html", "@id": "/quality-metrics-fastqc/03c93c63-6e74-4c55-931d-66044d6c6f7d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1411QCC/@@download/4DNFI1411QCC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c7d0fa4-1e17-44f7-a72f-276d83cc2e0b/4DNFI1411QCC.fastq.gz", "@id": "/files-fastq/4DNFI1411QCC/", "display_title": "4DNFI1411QCC.fastq.gz", "md5sum": "354649739c7cec3f2ca48b1fa17cc670", "file_classification": "raw file", "upload_key": "0c7d0fa4-1e17-44f7-a72f-276d83cc2e0b/4DNFI1411QCC.fastq.gz", "accession": "4DNFI1411QCC", "uuid": "0c7d0fa4-1e17-44f7-a72f-276d83cc2e0b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 242291418, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7ed3bd86-1c13-4aea-a895-730ce5c94b7b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5021168, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1411QCC/fastqc_report.html", "@id": "/quality-metrics-fastqc/7ed3bd86-1c13-4aea-a895-730ce5c94b7b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIM83AJNH/@@download/4DNFIM83AJNH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7d2cf89b-3e43-47c9-afc0-190fa21d6ae5/4DNFIM83AJNH.fastq.gz", "@id": "/files-fastq/4DNFIM83AJNH/", "display_title": "4DNFIM83AJNH.fastq.gz", "md5sum": "9deefd0bdfa50bb88f7217d7b92afb5e", "file_classification": "raw file", "upload_key": "7d2cf89b-3e43-47c9-afc0-190fa21d6ae5/4DNFIM83AJNH.fastq.gz", "accession": "4DNFIM83AJNH", "uuid": "7d2cf89b-3e43-47c9-afc0-190fa21d6ae5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 249048855, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d34e26c9-bc5c-4613-9788-504dc6bdcb04", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5202790, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIM83AJNH/fastqc_report.html", "@id": "/quality-metrics-fastqc/d34e26c9-bc5c-4613-9788-504dc6bdcb04/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRDG2KGD/@@download/4DNFIRDG2KGD.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c950d6d8-8625-45af-bc88-8b9a75957b83/4DNFIRDG2KGD.fastq.gz", "@id": "/files-fastq/4DNFIRDG2KGD/", "display_title": "4DNFIRDG2KGD.fastq.gz", "md5sum": "ca0c6ebf009f84a7f9c87fdaee6f46d2", "file_classification": "raw file", "upload_key": "c950d6d8-8625-45af-bc88-8b9a75957b83/4DNFIRDG2KGD.fastq.gz", "accession": "4DNFIRDG2KGD", "uuid": "c950d6d8-8625-45af-bc88-8b9a75957b83", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 236011224, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4ac7183b-9852-43bd-8469-0c7d34889eff", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4982332, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRDG2KGD/fastqc_report.html", "@id": "/quality-metrics-fastqc/4ac7183b-9852-43bd-8469-0c7d34889eff/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZZTULUS/@@download/4DNFIZZTULUS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c39b0e74-7a72-40dd-8491-5a4e80e8caf1/4DNFIZZTULUS.fastq.gz", "@id": "/files-fastq/4DNFIZZTULUS/", "display_title": "4DNFIZZTULUS.fastq.gz", "md5sum": "49bda4754bf41f53e94b76f040b6e900", "file_classification": "raw file", "upload_key": "c39b0e74-7a72-40dd-8491-5a4e80e8caf1/4DNFIZZTULUS.fastq.gz", "accession": "4DNFIZZTULUS", "uuid": "c39b0e74-7a72-40dd-8491-5a4e80e8caf1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232688414, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0af77063-08cb-4a33-8c91-854562786a1b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4811429, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZZTULUS/fastqc_report.html", "@id": "/quality-metrics-fastqc/0af77063-08cb-4a33-8c91-854562786a1b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI916RP8G/@@download/4DNFI916RP8G.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0f93e422-7cb3-4ee4-b401-4b8518031e54/4DNFI916RP8G.fastq.gz", "@id": "/files-fastq/4DNFI916RP8G/", "display_title": "4DNFI916RP8G.fastq.gz", "md5sum": "dc1a7949667e22abe2d46f834db116a1", "file_classification": "raw file", "upload_key": "0f93e422-7cb3-4ee4-b401-4b8518031e54/4DNFI916RP8G.fastq.gz", "accession": "4DNFI916RP8G", "uuid": "0f93e422-7cb3-4ee4-b401-4b8518031e54", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 272798981, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "81e43365-f0a3-4b50-8fd7-faac876e4c4a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5659517, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI916RP8G/fastqc_report.html", "@id": "/quality-metrics-fastqc/81e43365-f0a3-4b50-8fd7-faac876e4c4a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6X7GJ7R/@@download/4DNFI6X7GJ7R.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2de73ed7-4e70-4405-9763-b9485b99b708/4DNFI6X7GJ7R.fastq.gz", "@id": "/files-fastq/4DNFI6X7GJ7R/", "display_title": "4DNFI6X7GJ7R.fastq.gz", "md5sum": "66ec8a68d3704e0b1d8502eeb74b94d7", "file_classification": "raw file", "upload_key": "2de73ed7-4e70-4405-9763-b9485b99b708/4DNFI6X7GJ7R.fastq.gz", "accession": "4DNFI6X7GJ7R", "uuid": "2de73ed7-4e70-4405-9763-b9485b99b708", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 81537205, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "45685773-d808-4ebe-88cd-471fdb40b283", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1529505, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6X7GJ7R/fastqc_report.html", "@id": "/quality-metrics-fastqc/45685773-d808-4ebe-88cd-471fdb40b283/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5PYQ3W7/@@download/4DNFI5PYQ3W7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/43eeb4d8-8422-47d6-bbda-bb704378a13b/4DNFI5PYQ3W7.fastq.gz", "@id": "/files-fastq/4DNFI5PYQ3W7/", "display_title": "4DNFI5PYQ3W7.fastq.gz", "md5sum": "ea735a4ca1b3cebff5d1eefa9709b3e9", "file_classification": "raw file", "upload_key": "43eeb4d8-8422-47d6-bbda-bb704378a13b/4DNFI5PYQ3W7.fastq.gz", "accession": "4DNFI5PYQ3W7", "uuid": "43eeb4d8-8422-47d6-bbda-bb704378a13b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 247900061, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "84ac4bae-b8ee-481d-823d-df5e9fc6a52f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5199375, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5PYQ3W7/fastqc_report.html", "@id": "/quality-metrics-fastqc/84ac4bae-b8ee-481d-823d-df5e9fc6a52f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2ZD4RGB/@@download/4DNFI2ZD4RGB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c50cb885-e16e-4e32-a2f4-f23e93a75fbc/4DNFI2ZD4RGB.fastq.gz", "@id": "/files-fastq/4DNFI2ZD4RGB/", "display_title": "4DNFI2ZD4RGB.fastq.gz", "md5sum": "c24e0b25d3b093fe4449d2526119303e", "file_classification": "raw file", "upload_key": "c50cb885-e16e-4e32-a2f4-f23e93a75fbc/4DNFI2ZD4RGB.fastq.gz", "accession": "4DNFI2ZD4RGB", "uuid": "c50cb885-e16e-4e32-a2f4-f23e93a75fbc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 207575500, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "97a7dce5-9d91-4652-82a4-a11803477754", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4258768, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2ZD4RGB/fastqc_report.html", "@id": "/quality-metrics-fastqc/97a7dce5-9d91-4652-82a4-a11803477754/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHPE5ZSM/@@download/4DNFIHPE5ZSM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/599d74b0-e112-4aa8-9e7c-ed818aebc4d8/4DNFIHPE5ZSM.fastq.gz", "@id": "/files-fastq/4DNFIHPE5ZSM/", "display_title": "4DNFIHPE5ZSM.fastq.gz", "md5sum": "baf2fa57b6140466ad2738b47bb14c91", "file_classification": "raw file", "upload_key": "599d74b0-e112-4aa8-9e7c-ed818aebc4d8/4DNFIHPE5ZSM.fastq.gz", "accession": "4DNFIHPE5ZSM", "uuid": "599d74b0-e112-4aa8-9e7c-ed818aebc4d8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 238336093, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a302b7bf-6d0c-4cbe-9dad-08fa49889d0e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4915325, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHPE5ZSM/fastqc_report.html", "@id": "/quality-metrics-fastqc/a302b7bf-6d0c-4cbe-9dad-08fa49889d0e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOY1BAUO/@@download/4DNFIOY1BAUO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c37d41f5-8c23-4692-97e0-66e7a903e956/4DNFIOY1BAUO.fastq.gz", "@id": "/files-fastq/4DNFIOY1BAUO/", "display_title": "4DNFIOY1BAUO.fastq.gz", "md5sum": "3a0702e7b50357c32ea1889563de397d", "file_classification": "raw file", "upload_key": "c37d41f5-8c23-4692-97e0-66e7a903e956/4DNFIOY1BAUO.fastq.gz", "accession": "4DNFIOY1BAUO", "uuid": "c37d41f5-8c23-4692-97e0-66e7a903e956", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 240270507, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3a702c6d-5731-426f-a164-d8bba2347c60", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5000548, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOY1BAUO/fastqc_report.html", "@id": "/quality-metrics-fastqc/3a702c6d-5731-426f-a164-d8bba2347c60/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBE6N4AZ/@@download/4DNFIBE6N4AZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8a8a673e-874d-407c-b36e-eeaee9eeaa6e/4DNFIBE6N4AZ.fastq.gz", "@id": "/files-fastq/4DNFIBE6N4AZ/", "display_title": "4DNFIBE6N4AZ.fastq.gz", "md5sum": "7f248b97c3eb8dbf870471c9d18754be", "file_classification": "raw file", "upload_key": "8a8a673e-874d-407c-b36e-eeaee9eeaa6e/4DNFIBE6N4AZ.fastq.gz", "accession": "4DNFIBE6N4AZ", "uuid": "8a8a673e-874d-407c-b36e-eeaee9eeaa6e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234063726, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "899c7711-c424-47be-b9c7-a1217ebd6110", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4903443, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBE6N4AZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/899c7711-c424-47be-b9c7-a1217ebd6110/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVXCQIMQ/@@download/4DNFIVXCQIMQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bc4fc2a3-6820-49ba-8e74-74c45263afa3/4DNFIVXCQIMQ.fastq.gz", "@id": "/files-fastq/4DNFIVXCQIMQ/", "display_title": "4DNFIVXCQIMQ.fastq.gz", "md5sum": "b45414c2e49d4714c03481691010e9ef", "file_classification": "raw file", "upload_key": "bc4fc2a3-6820-49ba-8e74-74c45263afa3/4DNFIVXCQIMQ.fastq.gz", "accession": "4DNFIVXCQIMQ", "uuid": "bc4fc2a3-6820-49ba-8e74-74c45263afa3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 227768459, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2ca2500d-0e89-4b55-90b0-a4c94af11882", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4672287, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVXCQIMQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/2ca2500d-0e89-4b55-90b0-a4c94af11882/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRWRPY1B/@@download/4DNFIRWRPY1B.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/62ef6727-ede5-4bba-b0ce-1737b310d1af/4DNFIRWRPY1B.fastq.gz", "@id": "/files-fastq/4DNFIRWRPY1B/", "display_title": "4DNFIRWRPY1B.fastq.gz", "md5sum": "d00de30f85031edf9a8605c884a48038", "file_classification": "raw file", "upload_key": "62ef6727-ede5-4bba-b0ce-1737b310d1af/4DNFIRWRPY1B.fastq.gz", "accession": "4DNFIRWRPY1B", "uuid": "62ef6727-ede5-4bba-b0ce-1737b310d1af", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 249667204, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6390158e-fd70-4848-9acd-1e07d523c601", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5161657, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRWRPY1B/fastqc_report.html", "@id": "/quality-metrics-fastqc/6390158e-fd70-4848-9acd-1e07d523c601/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQ8IQ8M1/@@download/4DNFIQ8IQ8M1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/636c16fa-c286-404b-89ee-5aae00406352/4DNFIQ8IQ8M1.fastq.gz", "@id": "/files-fastq/4DNFIQ8IQ8M1/", "display_title": "4DNFIQ8IQ8M1.fastq.gz", "md5sum": "7a1c8da0729ca12b5ad204415130912b", "file_classification": "raw file", "upload_key": "636c16fa-c286-404b-89ee-5aae00406352/4DNFIQ8IQ8M1.fastq.gz", "accession": "4DNFIQ8IQ8M1", "uuid": "636c16fa-c286-404b-89ee-5aae00406352", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235767348, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "faaad19e-8020-4a25-8ef0-22f81fac1d05", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4896259, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQ8IQ8M1/fastqc_report.html", "@id": "/quality-metrics-fastqc/faaad19e-8020-4a25-8ef0-22f81fac1d05/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWII7WOY/@@download/4DNFIWII7WOY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/780572b9-b20a-4b94-9998-14181c8d3322/4DNFIWII7WOY.fastq.gz", "@id": "/files-fastq/4DNFIWII7WOY/", "display_title": "4DNFIWII7WOY.fastq.gz", "md5sum": "2b44720575eeafe7dbb4f166ea49b14b", "file_classification": "raw file", "upload_key": "780572b9-b20a-4b94-9998-14181c8d3322/4DNFIWII7WOY.fastq.gz", "accession": "4DNFIWII7WOY", "uuid": "780572b9-b20a-4b94-9998-14181c8d3322", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 212158311, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3fbdccd0-0f07-410b-8207-63ac2c57a35e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4392510, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWII7WOY/fastqc_report.html", "@id": "/quality-metrics-fastqc/3fbdccd0-0f07-410b-8207-63ac2c57a35e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVSHEI46/@@download/4DNFIVSHEI46.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4b69f5af-38e5-4b99-a707-d27761e7ca21/4DNFIVSHEI46.fastq.gz", "@id": "/files-fastq/4DNFIVSHEI46/", "display_title": "4DNFIVSHEI46.fastq.gz", "md5sum": "6404c0f3f12110515d821393a9ef87eb", "file_classification": "raw file", "upload_key": "4b69f5af-38e5-4b99-a707-d27761e7ca21/4DNFIVSHEI46.fastq.gz", "accession": "4DNFIVSHEI46", "uuid": "4b69f5af-38e5-4b99-a707-d27761e7ca21", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 225820668, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dfa68539-c5e9-4c7e-ad19-c4dd60a77ef7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4613540, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVSHEI46/fastqc_report.html", "@id": "/quality-metrics-fastqc/dfa68539-c5e9-4c7e-ad19-c4dd60a77ef7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJ8GV1OM/@@download/4DNFIJ8GV1OM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7dec0abe-8720-421c-aec7-d2cfd9355b0c/4DNFIJ8GV1OM.fastq.gz", "@id": "/files-fastq/4DNFIJ8GV1OM/", "display_title": "4DNFIJ8GV1OM.fastq.gz", "md5sum": "f1349c18b34b727f283fd8479d065cec", "file_classification": "raw file", "upload_key": "7dec0abe-8720-421c-aec7-d2cfd9355b0c/4DNFIJ8GV1OM.fastq.gz", "accession": "4DNFIJ8GV1OM", "uuid": "7dec0abe-8720-421c-aec7-d2cfd9355b0c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 243584984, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "89e544c6-1816-4170-b2d2-c8f1ae461b1d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4985919, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ8GV1OM/fastqc_report.html", "@id": "/quality-metrics-fastqc/89e544c6-1816-4170-b2d2-c8f1ae461b1d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI347COE7/@@download/4DNFI347COE7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e38a6119-28e3-4b11-b43d-ed3960e78ed8/4DNFI347COE7.fastq.gz", "@id": "/files-fastq/4DNFI347COE7/", "display_title": "4DNFI347COE7.fastq.gz", "md5sum": "af0a176dbf02342d7f83ec0aea732841", "file_classification": "raw file", "upload_key": "e38a6119-28e3-4b11-b43d-ed3960e78ed8/4DNFI347COE7.fastq.gz", "accession": "4DNFI347COE7", "uuid": "e38a6119-28e3-4b11-b43d-ed3960e78ed8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 218542707, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6d385855-97cb-4c26-bc5a-97114db4dc4c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4536328, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI347COE7/fastqc_report.html", "@id": "/quality-metrics-fastqc/6d385855-97cb-4c26-bc5a-97114db4dc4c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIASB1HMR/@@download/4DNFIASB1HMR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8136a946-25fc-4094-a9bd-72b7c3d8962a/4DNFIASB1HMR.fastq.gz", "@id": "/files-fastq/4DNFIASB1HMR/", "display_title": "4DNFIASB1HMR.fastq.gz", "md5sum": "e079be0872c5769b8412db65401fd9fe", "file_classification": "raw file", "upload_key": "8136a946-25fc-4094-a9bd-72b7c3d8962a/4DNFIASB1HMR.fastq.gz", "accession": "4DNFIASB1HMR", "uuid": "8136a946-25fc-4094-a9bd-72b7c3d8962a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 220943457, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "403d0838-7989-4834-8998-6036fb63275a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4566704, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIASB1HMR/fastqc_report.html", "@id": "/quality-metrics-fastqc/403d0838-7989-4834-8998-6036fb63275a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDQRBAGQ/@@download/4DNFIDQRBAGQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/12fb9257-b908-4171-973b-374e065140a5/4DNFIDQRBAGQ.fastq.gz", "@id": "/files-fastq/4DNFIDQRBAGQ/", "display_title": "4DNFIDQRBAGQ.fastq.gz", "md5sum": "5c05ed4099d50790837a43f50783f890", "file_classification": "raw file", "upload_key": "12fb9257-b908-4171-973b-374e065140a5/4DNFIDQRBAGQ.fastq.gz", "accession": "4DNFIDQRBAGQ", "uuid": "12fb9257-b908-4171-973b-374e065140a5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 242149915, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e440b7c0-4c5d-43ff-99f2-a5beddf751da", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4947540, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDQRBAGQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/e440b7c0-4c5d-43ff-99f2-a5beddf751da/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVYJGSPD/@@download/4DNFIVYJGSPD.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/88454974-7342-44c2-922e-a15ec609b493/4DNFIVYJGSPD.fastq.gz", "@id": "/files-fastq/4DNFIVYJGSPD/", "display_title": "4DNFIVYJGSPD.fastq.gz", "md5sum": "b5feafff458398e7c837fe2fc4defb45", "file_classification": "raw file", "upload_key": "88454974-7342-44c2-922e-a15ec609b493/4DNFIVYJGSPD.fastq.gz", "accession": "4DNFIVYJGSPD", "uuid": "88454974-7342-44c2-922e-a15ec609b493", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234150531, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "486692b3-02db-450a-83a1-84bbf1c5dcb7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4828343, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVYJGSPD/fastqc_report.html", "@id": "/quality-metrics-fastqc/486692b3-02db-450a-83a1-84bbf1c5dcb7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIU3JLLVY/@@download/4DNFIU3JLLVY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/de352baa-1938-4b79-a070-17e7b5b43b0c/4DNFIU3JLLVY.fastq.gz", "@id": "/files-fastq/4DNFIU3JLLVY/", "display_title": "4DNFIU3JLLVY.fastq.gz", "md5sum": "c965081aa3c13cc6d5e4a360493e8654", "file_classification": "raw file", "upload_key": "de352baa-1938-4b79-a070-17e7b5b43b0c/4DNFIU3JLLVY.fastq.gz", "accession": "4DNFIU3JLLVY", "uuid": "de352baa-1938-4b79-a070-17e7b5b43b0c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 243440347, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8906e2f9-71bc-4387-86b3-993901f0e16a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4993493, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIU3JLLVY/fastqc_report.html", "@id": "/quality-metrics-fastqc/8906e2f9-71bc-4387-86b3-993901f0e16a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHW1IAB9/@@download/4DNFIHW1IAB9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b47d343c-8169-4ace-8e33-d7fcec2472bd/4DNFIHW1IAB9.fastq.gz", "@id": "/files-fastq/4DNFIHW1IAB9/", "display_title": "4DNFIHW1IAB9.fastq.gz", "md5sum": "65130468210bef7c35037af66b1a28e1", "file_classification": "raw file", "upload_key": "b47d343c-8169-4ace-8e33-d7fcec2472bd/4DNFIHW1IAB9.fastq.gz", "accession": "4DNFIHW1IAB9", "uuid": "b47d343c-8169-4ace-8e33-d7fcec2472bd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 216742021, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "86de00b0-a270-4653-801f-30f2c759ff8b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4500752, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHW1IAB9/fastqc_report.html", "@id": "/quality-metrics-fastqc/86de00b0-a270-4653-801f-30f2c759ff8b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXTNS3QM/@@download/4DNFIXTNS3QM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bba755a2-feef-4da9-8c54-f8252baa9b8b/4DNFIXTNS3QM.fastq.gz", "@id": "/files-fastq/4DNFIXTNS3QM/", "display_title": "4DNFIXTNS3QM.fastq.gz", "md5sum": "234b2eae996efebc038cd801d63a548c", "file_classification": "raw file", "upload_key": "bba755a2-feef-4da9-8c54-f8252baa9b8b/4DNFIXTNS3QM.fastq.gz", "accession": "4DNFIXTNS3QM", "uuid": "bba755a2-feef-4da9-8c54-f8252baa9b8b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235108955, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2010bb57-12d4-4202-a291-352cf04f6368", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4834217, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXTNS3QM/fastqc_report.html", "@id": "/quality-metrics-fastqc/2010bb57-12d4-4202-a291-352cf04f6368/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOIT7XMS/@@download/4DNFIOIT7XMS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/89120524-c4c7-4ea3-9f48-637bfb05804b/4DNFIOIT7XMS.fastq.gz", "@id": "/files-fastq/4DNFIOIT7XMS/", "display_title": "4DNFIOIT7XMS.fastq.gz", "md5sum": "3cb07a017d5332af6b6dcb8d0bcd318a", "file_classification": "raw file", "upload_key": "89120524-c4c7-4ea3-9f48-637bfb05804b/4DNFIOIT7XMS.fastq.gz", "accession": "4DNFIOIT7XMS", "uuid": "89120524-c4c7-4ea3-9f48-637bfb05804b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234481710, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4e837098-c813-4d45-a64e-3f8e703b983b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4811994, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOIT7XMS/fastqc_report.html", "@id": "/quality-metrics-fastqc/4e837098-c813-4d45-a64e-3f8e703b983b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5JLXJK8/@@download/4DNFI5JLXJK8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d2807866-89b9-478f-9280-060fa31b7f61/4DNFI5JLXJK8.fastq.gz", "@id": "/files-fastq/4DNFI5JLXJK8/", "display_title": "4DNFI5JLXJK8.fastq.gz", "md5sum": "583431979e744fd874af6d05d5030ea4", "file_classification": "raw file", "upload_key": "d2807866-89b9-478f-9280-060fa31b7f61/4DNFI5JLXJK8.fastq.gz", "accession": "4DNFI5JLXJK8", "uuid": "d2807866-89b9-478f-9280-060fa31b7f61", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 257993009, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "95304878-6081-43a3-bddb-dcd1dec9d723", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5404468, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5JLXJK8/fastqc_report.html", "@id": "/quality-metrics-fastqc/95304878-6081-43a3-bddb-dcd1dec9d723/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVPP32T6/@@download/4DNFIVPP32T6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8ed80160-9d8b-4c43-897b-a761de7b5931/4DNFIVPP32T6.fastq.gz", "@id": "/files-fastq/4DNFIVPP32T6/", "display_title": "4DNFIVPP32T6.fastq.gz", "md5sum": "c35a9fc67f5949b1d6256444863ad69d", "file_classification": "raw file", "upload_key": "8ed80160-9d8b-4c43-897b-a761de7b5931/4DNFIVPP32T6.fastq.gz", "accession": "4DNFIVPP32T6", "uuid": "8ed80160-9d8b-4c43-897b-a761de7b5931", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234317731, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eee0b204-2bc6-4341-9787-11e27fb73bc4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4874830, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVPP32T6/fastqc_report.html", "@id": "/quality-metrics-fastqc/eee0b204-2bc6-4341-9787-11e27fb73bc4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWJ3ZNN6/@@download/4DNFIWJ3ZNN6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/88a295fd-9879-4dcf-be97-fd136ad2d45a/4DNFIWJ3ZNN6.fastq.gz", "@id": "/files-fastq/4DNFIWJ3ZNN6/", "display_title": "4DNFIWJ3ZNN6.fastq.gz", "md5sum": "9784498fffc08ad61815aaf3efcf4971", "file_classification": "raw file", "upload_key": "88a295fd-9879-4dcf-be97-fd136ad2d45a/4DNFIWJ3ZNN6.fastq.gz", "accession": "4DNFIWJ3ZNN6", "uuid": "88a295fd-9879-4dcf-be97-fd136ad2d45a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 214312081, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "686da06f-cab1-4438-ac7c-3d73cecf8b9d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4385747, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWJ3ZNN6/fastqc_report.html", "@id": "/quality-metrics-fastqc/686da06f-cab1-4438-ac7c-3d73cecf8b9d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFII25VB8T/@@download/4DNFII25VB8T.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/66a6bf44-b52e-43f3-badd-8286fbaeea79/4DNFII25VB8T.fastq.gz", "@id": "/files-fastq/4DNFII25VB8T/", "display_title": "4DNFII25VB8T.fastq.gz", "md5sum": "135b1d66aba10713c00a2fb61020b048", "file_classification": "raw file", "upload_key": "66a6bf44-b52e-43f3-badd-8286fbaeea79/4DNFII25VB8T.fastq.gz", "accession": "4DNFII25VB8T", "uuid": "66a6bf44-b52e-43f3-badd-8286fbaeea79", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235234627, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2cc20761-f4d9-4b15-b8c9-890af0b50862", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4885509, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFII25VB8T/fastqc_report.html", "@id": "/quality-metrics-fastqc/2cc20761-f4d9-4b15-b8c9-890af0b50862/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIF9P6RU2/@@download/4DNFIF9P6RU2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/28a4e1c6-c072-4e86-bb58-b9fd75cb68fb/4DNFIF9P6RU2.fastq.gz", "@id": "/files-fastq/4DNFIF9P6RU2/", "display_title": "4DNFIF9P6RU2.fastq.gz", "md5sum": "d9ca84ae3d2335a0f2ccbd3f4eccfcab", "file_classification": "raw file", "upload_key": "28a4e1c6-c072-4e86-bb58-b9fd75cb68fb/4DNFIF9P6RU2.fastq.gz", "accession": "4DNFIF9P6RU2", "uuid": "28a4e1c6-c072-4e86-bb58-b9fd75cb68fb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 233961298, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "20f69025-ca5c-4e8f-955a-605ec0cba126", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4846678, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF9P6RU2/fastqc_report.html", "@id": "/quality-metrics-fastqc/20f69025-ca5c-4e8f-955a-605ec0cba126/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFZSH6UY/@@download/4DNFIFZSH6UY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4096ee7e-ce18-45f8-beff-e9afd333d32e/4DNFIFZSH6UY.fastq.gz", "@id": "/files-fastq/4DNFIFZSH6UY/", "display_title": "4DNFIFZSH6UY.fastq.gz", "md5sum": "24ef43798dc33f5438686e6e8b5604e2", "file_classification": "raw file", "upload_key": "4096ee7e-ce18-45f8-beff-e9afd333d32e/4DNFIFZSH6UY.fastq.gz", "accession": "4DNFIFZSH6UY", "uuid": "4096ee7e-ce18-45f8-beff-e9afd333d32e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230484482, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d2026681-20c2-4ce4-82e3-6c963660ac30", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4783004, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFZSH6UY/fastqc_report.html", "@id": "/quality-metrics-fastqc/d2026681-20c2-4ce4-82e3-6c963660ac30/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWQ8OX5V/@@download/4DNFIWQ8OX5V.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9fcc6968-d8f9-430e-9e19-088d8c37905a/4DNFIWQ8OX5V.fastq.gz", "@id": "/files-fastq/4DNFIWQ8OX5V/", "display_title": "4DNFIWQ8OX5V.fastq.gz", "md5sum": "817fe2359845413e39ee16683bb497f7", "file_classification": "raw file", "upload_key": "9fcc6968-d8f9-430e-9e19-088d8c37905a/4DNFIWQ8OX5V.fastq.gz", "accession": "4DNFIWQ8OX5V", "uuid": "9fcc6968-d8f9-430e-9e19-088d8c37905a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 235136094, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a40146fe-35b9-4d02-990b-b358242b8edb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4895264, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWQ8OX5V/fastqc_report.html", "@id": "/quality-metrics-fastqc/a40146fe-35b9-4d02-990b-b358242b8edb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIC1CWKK2/@@download/4DNFIC1CWKK2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cf59c21d-6ec8-4c35-8bf1-d8940eac8c96/4DNFIC1CWKK2.fastq.gz", "@id": "/files-fastq/4DNFIC1CWKK2/", "display_title": "4DNFIC1CWKK2.fastq.gz", "md5sum": "e71a6412671a27a4867e28ca61e8a7f2", "file_classification": "raw file", "upload_key": "cf59c21d-6ec8-4c35-8bf1-d8940eac8c96/4DNFIC1CWKK2.fastq.gz", "accession": "4DNFIC1CWKK2", "uuid": "cf59c21d-6ec8-4c35-8bf1-d8940eac8c96", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 236933183, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f08812b6-635a-4902-b7af-fd9af60f3d6e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4917243, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIC1CWKK2/fastqc_report.html", "@id": "/quality-metrics-fastqc/f08812b6-635a-4902-b7af-fd9af60f3d6e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHTYB9Q6/@@download/4DNFIHTYB9Q6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cf69da11-b56c-4320-9e66-d5a75495fd89/4DNFIHTYB9Q6.fastq.gz", "@id": "/files-fastq/4DNFIHTYB9Q6/", "display_title": "4DNFIHTYB9Q6.fastq.gz", "md5sum": "0f57545c0f6f22f3d8fe3d405b2b47fa", "file_classification": "raw file", "upload_key": "cf69da11-b56c-4320-9e66-d5a75495fd89/4DNFIHTYB9Q6.fastq.gz", "accession": "4DNFIHTYB9Q6", "uuid": "cf69da11-b56c-4320-9e66-d5a75495fd89", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234688261, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "46bbd834-3848-4918-9bca-a6d1d16079aa", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4893161, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHTYB9Q6/fastqc_report.html", "@id": "/quality-metrics-fastqc/46bbd834-3848-4918-9bca-a6d1d16079aa/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZXSU9DW/@@download/4DNFIZXSU9DW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e2759a15-649a-4b87-a632-d2fd8d1355a0/4DNFIZXSU9DW.fastq.gz", "@id": "/files-fastq/4DNFIZXSU9DW/", "display_title": "4DNFIZXSU9DW.fastq.gz", "md5sum": "03ac7833bb302f84788ef782e4f7e0c5", "file_classification": "raw file", "upload_key": "e2759a15-649a-4b87-a632-d2fd8d1355a0/4DNFIZXSU9DW.fastq.gz", "accession": "4DNFIZXSU9DW", "uuid": "e2759a15-649a-4b87-a632-d2fd8d1355a0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 238357312, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "78c9e926-e2b4-49df-9f88-ef5a14339880", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4951170, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZXSU9DW/fastqc_report.html", "@id": "/quality-metrics-fastqc/78c9e926-e2b4-49df-9f88-ef5a14339880/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICE6542C/@@download/4DNFICE6542C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2597aa53-dbc6-4c15-8d87-bc6644ee605b/4DNFICE6542C.fastq.gz", "@id": "/files-fastq/4DNFICE6542C/", "display_title": "4DNFICE6542C.fastq.gz", "md5sum": "3f4948eb4073e161350a4f785632c8af", "file_classification": "raw file", "upload_key": "2597aa53-dbc6-4c15-8d87-bc6644ee605b/4DNFICE6542C.fastq.gz", "accession": "4DNFICE6542C", "uuid": "2597aa53-dbc6-4c15-8d87-bc6644ee605b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 223332956, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "50fb92f4-bae1-4d6a-a773-6265c3bf3160", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4656140, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICE6542C/fastqc_report.html", "@id": "/quality-metrics-fastqc/50fb92f4-bae1-4d6a-a773-6265c3bf3160/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFKYVG9Y/@@download/4DNFIFKYVG9Y.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0b127400-f321-4557-b59a-d939b209d4ef/4DNFIFKYVG9Y.fastq.gz", "@id": "/files-fastq/4DNFIFKYVG9Y/", "display_title": "4DNFIFKYVG9Y.fastq.gz", "md5sum": "69d9569ae67d4b982cd97eb5d575a88c", "file_classification": "raw file", "upload_key": "0b127400-f321-4557-b59a-d939b209d4ef/4DNFIFKYVG9Y.fastq.gz", "accession": "4DNFIFKYVG9Y", "uuid": "0b127400-f321-4557-b59a-d939b209d4ef", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232225359, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "85a82310-0fdb-43bc-b134-bd2b7c69b1da", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4834296, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFKYVG9Y/fastqc_report.html", "@id": "/quality-metrics-fastqc/85a82310-0fdb-43bc-b134-bd2b7c69b1da/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIH7MYE7M/@@download/4DNFIH7MYE7M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3b0f6763-bafc-422c-bdcb-b8b6e1100616/4DNFIH7MYE7M.fastq.gz", "@id": "/files-fastq/4DNFIH7MYE7M/", "display_title": "4DNFIH7MYE7M.fastq.gz", "md5sum": "cf2eb42139070dbac992910024b54f49", "file_classification": "raw file", "upload_key": "3b0f6763-bafc-422c-bdcb-b8b6e1100616/4DNFIH7MYE7M.fastq.gz", "accession": "4DNFIH7MYE7M", "uuid": "3b0f6763-bafc-422c-bdcb-b8b6e1100616", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234701924, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cad453a1-08a9-4ebe-82c1-2515b8cf039f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4914744, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIH7MYE7M/fastqc_report.html", "@id": "/quality-metrics-fastqc/cad453a1-08a9-4ebe-82c1-2515b8cf039f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINF6Z7L2/@@download/4DNFINF6Z7L2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4d2d98ec-bdec-4f28-a728-54d0f3384bb0/4DNFINF6Z7L2.fastq.gz", "@id": "/files-fastq/4DNFINF6Z7L2/", "display_title": "4DNFINF6Z7L2.fastq.gz", "md5sum": "8cf3e9660b73129c3331291f2f942f8f", "file_classification": "raw file", "upload_key": "4d2d98ec-bdec-4f28-a728-54d0f3384bb0/4DNFINF6Z7L2.fastq.gz", "accession": "4DNFINF6Z7L2", "uuid": "4d2d98ec-bdec-4f28-a728-54d0f3384bb0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 237747749, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8942a9e0-5777-47ef-87c2-1aef23228a9c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4920735, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINF6Z7L2/fastqc_report.html", "@id": "/quality-metrics-fastqc/8942a9e0-5777-47ef-87c2-1aef23228a9c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7YVHXEF/@@download/4DNFI7YVHXEF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cd69028c-b472-4762-b22c-14d3b3c8498d/4DNFI7YVHXEF.fastq.gz", "@id": "/files-fastq/4DNFI7YVHXEF/", "display_title": "4DNFI7YVHXEF.fastq.gz", "md5sum": "3e6b65fa321ff19fb000c887d31878b4", "file_classification": "raw file", "upload_key": "cd69028c-b472-4762-b22c-14d3b3c8498d/4DNFI7YVHXEF.fastq.gz", "accession": "4DNFI7YVHXEF", "uuid": "cd69028c-b472-4762-b22c-14d3b3c8498d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234867347, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "76fa2093-fd56-4d33-8a6c-31600530de02", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4842782, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7YVHXEF/fastqc_report.html", "@id": "/quality-metrics-fastqc/76fa2093-fd56-4d33-8a6c-31600530de02/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6GTGD2C/@@download/4DNFI6GTGD2C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/62856da9-331a-42c8-9e8f-9163dadbf896/4DNFI6GTGD2C.fastq.gz", "@id": "/files-fastq/4DNFI6GTGD2C/", "display_title": "4DNFI6GTGD2C.fastq.gz", "md5sum": "ca7824524720fff311b39f73978a8e8c", "file_classification": "raw file", "upload_key": "62856da9-331a-42c8-9e8f-9163dadbf896/4DNFI6GTGD2C.fastq.gz", "accession": "4DNFI6GTGD2C", "uuid": "62856da9-331a-42c8-9e8f-9163dadbf896", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 237417605, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "540087fa-97ad-4b05-9d64-6594b50197bc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4897666, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6GTGD2C/fastqc_report.html", "@id": "/quality-metrics-fastqc/540087fa-97ad-4b05-9d64-6594b50197bc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIK1X2IMN/@@download/4DNFIK1X2IMN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d91886dc-badf-4a58-b7f0-72b75d2422a5/4DNFIK1X2IMN.fastq.gz", "@id": "/files-fastq/4DNFIK1X2IMN/", "display_title": "4DNFIK1X2IMN.fastq.gz", "md5sum": "54800de1a355e50a3a9f84cd85ae31dc", "file_classification": "raw file", "upload_key": "d91886dc-badf-4a58-b7f0-72b75d2422a5/4DNFIK1X2IMN.fastq.gz", "accession": "4DNFIK1X2IMN", "uuid": "d91886dc-badf-4a58-b7f0-72b75d2422a5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 212494675, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c450273d-769b-470b-8dc0-e88e0f19e908", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4401304, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK1X2IMN/fastqc_report.html", "@id": "/quality-metrics-fastqc/c450273d-769b-470b-8dc0-e88e0f19e908/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOB5OGT8/@@download/4DNFIOB5OGT8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1997dddf-cc19-497c-a964-3b94894a2c3f/4DNFIOB5OGT8.fastq.gz", "@id": "/files-fastq/4DNFIOB5OGT8/", "display_title": "4DNFIOB5OGT8.fastq.gz", "md5sum": "336ea4bac8bd681394516bef5749d53e", "file_classification": "raw file", "upload_key": "1997dddf-cc19-497c-a964-3b94894a2c3f/4DNFIOB5OGT8.fastq.gz", "accession": "4DNFIOB5OGT8", "uuid": "1997dddf-cc19-497c-a964-3b94894a2c3f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 218726511, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "65fc1e6c-d82b-4da6-b012-842f916e30bc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4481048, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOB5OGT8/fastqc_report.html", "@id": "/quality-metrics-fastqc/65fc1e6c-d82b-4da6-b012-842f916e30bc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVJ92D7U/@@download/4DNFIVJ92D7U.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/63c982ee-322d-4b4b-ae65-0551c75633ee/4DNFIVJ92D7U.fastq.gz", "@id": "/files-fastq/4DNFIVJ92D7U/", "display_title": "4DNFIVJ92D7U.fastq.gz", "md5sum": "0258fb115aef780576c4fb183813117f", "file_classification": "raw file", "upload_key": "63c982ee-322d-4b4b-ae65-0551c75633ee/4DNFIVJ92D7U.fastq.gz", "accession": "4DNFIVJ92D7U", "uuid": "63c982ee-322d-4b4b-ae65-0551c75633ee", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234085546, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "444cebf8-9641-455c-8e34-a6b7cd76aff7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4896531, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVJ92D7U/fastqc_report.html", "@id": "/quality-metrics-fastqc/444cebf8-9641-455c-8e34-a6b7cd76aff7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFII6RFPU4/@@download/4DNFII6RFPU4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1a31b36c-37d9-46e4-85e5-d120233437a3/4DNFII6RFPU4.fastq.gz", "@id": "/files-fastq/4DNFII6RFPU4/", "display_title": "4DNFII6RFPU4.fastq.gz", "md5sum": "8153627b229c976fbd19c569e28810fb", "file_classification": "raw file", "upload_key": "1a31b36c-37d9-46e4-85e5-d120233437a3/4DNFII6RFPU4.fastq.gz", "accession": "4DNFII6RFPU4", "uuid": "1a31b36c-37d9-46e4-85e5-d120233437a3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 185847481, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c03beb93-8978-46fe-8325-60ddfc76a968", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3769262, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFII6RFPU4/fastqc_report.html", "@id": "/quality-metrics-fastqc/c03beb93-8978-46fe-8325-60ddfc76a968/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIL26CSEH/@@download/4DNFIL26CSEH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8821d954-b68c-4f43-a99c-09a5fa456ceb/4DNFIL26CSEH.fastq.gz", "@id": "/files-fastq/4DNFIL26CSEH/", "display_title": "4DNFIL26CSEH.fastq.gz", "md5sum": "82c2c3e2d3c193e844ee397d8dba92b2", "file_classification": "raw file", "upload_key": "8821d954-b68c-4f43-a99c-09a5fa456ceb/4DNFIL26CSEH.fastq.gz", "accession": "4DNFIL26CSEH", "uuid": "8821d954-b68c-4f43-a99c-09a5fa456ceb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 224265881, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bc13fa75-3092-47b5-90cb-f5c92a9cf371", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4651379, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIL26CSEH/fastqc_report.html", "@id": "/quality-metrics-fastqc/bc13fa75-3092-47b5-90cb-f5c92a9cf371/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIL26ZDPF/@@download/4DNFIL26ZDPF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f6aae23e-77b6-49ac-9ba3-63d1add0798f/4DNFIL26ZDPF.fastq.gz", "@id": "/files-fastq/4DNFIL26ZDPF/", "display_title": "4DNFIL26ZDPF.fastq.gz", "md5sum": "a76091ab4b310b35761c7b43ca6934db", "file_classification": "raw file", "upload_key": "f6aae23e-77b6-49ac-9ba3-63d1add0798f/4DNFIL26ZDPF.fastq.gz", "accession": "4DNFIL26ZDPF", "uuid": "f6aae23e-77b6-49ac-9ba3-63d1add0798f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 225184327, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "647df39d-fae1-4821-9431-1065dc998620", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4700909, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIL26ZDPF/fastqc_report.html", "@id": "/quality-metrics-fastqc/647df39d-fae1-4821-9431-1065dc998620/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9DW6Z4H/@@download/4DNFI9DW6Z4H.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/99b21249-5974-4373-944f-79d6bac9f301/4DNFI9DW6Z4H.fastq.gz", "@id": "/files-fastq/4DNFI9DW6Z4H/", "display_title": "4DNFI9DW6Z4H.fastq.gz", "md5sum": "66edeacc200922cdebe3bff1e6861359", "file_classification": "raw file", "upload_key": "99b21249-5974-4373-944f-79d6bac9f301/4DNFI9DW6Z4H.fastq.gz", "accession": "4DNFI9DW6Z4H", "uuid": "99b21249-5974-4373-944f-79d6bac9f301", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 252087323, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d91a41c8-d67e-46ce-a029-16e097c18f67", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5478406, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9DW6Z4H/fastqc_report.html", "@id": "/quality-metrics-fastqc/d91a41c8-d67e-46ce-a029-16e097c18f67/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIII7PHD/@@download/4DNFIIII7PHD.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8e6b95fc-8e41-464e-b221-25cba79f7442/4DNFIIII7PHD.fastq.gz", "@id": "/files-fastq/4DNFIIII7PHD/", "display_title": "4DNFIIII7PHD.fastq.gz", "md5sum": "2892819aacc5d1317e95a146a4b14136", "file_classification": "raw file", "upload_key": "8e6b95fc-8e41-464e-b221-25cba79f7442/4DNFIIII7PHD.fastq.gz", "accession": "4DNFIIII7PHD", "uuid": "8e6b95fc-8e41-464e-b221-25cba79f7442", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 606654643, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "64182e9b-87ed-4958-af76-e7806f1b1361", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 13301916, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIII7PHD/fastqc_report.html", "@id": "/quality-metrics-fastqc/64182e9b-87ed-4958-af76-e7806f1b1361/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5UO9781/@@download/4DNFI5UO9781.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7bd9e030-fa92-4df1-a4b9-92a52359920f/4DNFI5UO9781.fastq.gz", "@id": "/files-fastq/4DNFI5UO9781/", "display_title": "4DNFI5UO9781.fastq.gz", "md5sum": "4b1c1a5cb1dba965a6f0bd6af56d08a3", "file_classification": "raw file", "upload_key": "7bd9e030-fa92-4df1-a4b9-92a52359920f/4DNFI5UO9781.fastq.gz", "accession": "4DNFI5UO9781", "uuid": "7bd9e030-fa92-4df1-a4b9-92a52359920f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 222419659, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8ad5938b-30a0-4960-b808-90bb9c9f5501", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4828289, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5UO9781/fastqc_report.html", "@id": "/quality-metrics-fastqc/8ad5938b-30a0-4960-b808-90bb9c9f5501/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKXUI2BI/@@download/4DNFIKXUI2BI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/54f657f0-953e-43f5-bccb-67daabc13fe4/4DNFIKXUI2BI.fastq.gz", "@id": "/files-fastq/4DNFIKXUI2BI/", "display_title": "4DNFIKXUI2BI.fastq.gz", "md5sum": "a7168db365bac66bae9c2d141c3e5390", "file_classification": "raw file", "upload_key": "54f657f0-953e-43f5-bccb-67daabc13fe4/4DNFIKXUI2BI.fastq.gz", "accession": "4DNFIKXUI2BI", "uuid": "54f657f0-953e-43f5-bccb-67daabc13fe4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 583411581, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8e7e20ea-adf9-4a32-a47e-f029674185c1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 12826031, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKXUI2BI/fastqc_report.html", "@id": "/quality-metrics-fastqc/8e7e20ea-adf9-4a32-a47e-f029674185c1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXNQNZQA/@@download/4DNFIXNQNZQA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2f13fd23-588f-40c3-9055-f5438f15b5b1/4DNFIXNQNZQA.fastq.gz", "@id": "/files-fastq/4DNFIXNQNZQA/", "display_title": "4DNFIXNQNZQA.fastq.gz", "md5sum": "c4d9c00fe9a2664e0d0b99c9db377318", "file_classification": "raw file", "upload_key": "2f13fd23-588f-40c3-9055-f5438f15b5b1/4DNFIXNQNZQA.fastq.gz", "accession": "4DNFIXNQNZQA", "uuid": "2f13fd23-588f-40c3-9055-f5438f15b5b1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 257776872, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2372cd7e-d49f-4f36-a955-3719d8f5e451", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5633957, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXNQNZQA/fastqc_report.html", "@id": "/quality-metrics-fastqc/2372cd7e-d49f-4f36-a955-3719d8f5e451/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIXHBQDJD/@@download/4DNFIXHBQDJD.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/de55184a-3691-4c15-b85a-474af418007d/4DNFIXHBQDJD.fastq.gz", "@id": "/files-fastq/4DNFIXHBQDJD/", "display_title": "4DNFIXHBQDJD.fastq.gz", "md5sum": "b50fa67a89f3d9eee28acfaba85ee1c9", "file_classification": "raw file", "upload_key": "de55184a-3691-4c15-b85a-474af418007d/4DNFIXHBQDJD.fastq.gz", "accession": "4DNFIXHBQDJD", "uuid": "de55184a-3691-4c15-b85a-474af418007d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 205722075, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d93a9eee-5c55-4a0e-a310-edda34d52065", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4521403, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXHBQDJD/fastqc_report.html", "@id": "/quality-metrics-fastqc/d93a9eee-5c55-4a0e-a310-edda34d52065/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIX3WWJZB/@@download/4DNFIX3WWJZB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9a31226b-b42c-42ae-9076-c631b72a8c5c/4DNFIX3WWJZB.fastq.gz", "@id": "/files-fastq/4DNFIX3WWJZB/", "display_title": "4DNFIX3WWJZB.fastq.gz", "md5sum": "f281a95c131bc2cc3310b7804ea00f3d", "file_classification": "raw file", "upload_key": "9a31226b-b42c-42ae-9076-c631b72a8c5c/4DNFIX3WWJZB.fastq.gz", "accession": "4DNFIX3WWJZB", "uuid": "9a31226b-b42c-42ae-9076-c631b72a8c5c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 262292003, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a2771297-5d84-41c4-a5b3-8c27f0571bdc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5701892, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX3WWJZB/fastqc_report.html", "@id": "/quality-metrics-fastqc/a2771297-5d84-41c4-a5b3-8c27f0571bdc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIEGGNMRB/@@download/4DNFIEGGNMRB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a96c3a86-f67d-45d3-8ce3-6fe34b5c838c/4DNFIEGGNMRB.fastq.gz", "@id": "/files-fastq/4DNFIEGGNMRB/", "display_title": "4DNFIEGGNMRB.fastq.gz", "md5sum": "fbeec9350b8d186e7f1c2f461ac8c331", "file_classification": "raw file", "upload_key": "a96c3a86-f67d-45d3-8ce3-6fe34b5c838c/4DNFIEGGNMRB.fastq.gz", "accession": "4DNFIEGGNMRB", "uuid": "a96c3a86-f67d-45d3-8ce3-6fe34b5c838c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 594045433, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "206fabda-a386-4c77-a537-651d26040683", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 13151419, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEGGNMRB/fastqc_report.html", "@id": "/quality-metrics-fastqc/206fabda-a386-4c77-a537-651d26040683/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYO4ALNW/@@download/4DNFIYO4ALNW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0064924d-633e-42bd-9513-8b1a6e3a053b/4DNFIYO4ALNW.fastq.gz", "@id": "/files-fastq/4DNFIYO4ALNW/", "display_title": "4DNFIYO4ALNW.fastq.gz", "md5sum": "a1d0027910fd8c5815cbc5714eab23ef", "file_classification": "raw file", "upload_key": "0064924d-633e-42bd-9513-8b1a6e3a053b/4DNFIYO4ALNW.fastq.gz", "accession": "4DNFIYO4ALNW", "uuid": "0064924d-633e-42bd-9513-8b1a6e3a053b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 285153126, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fc5f488f-10bd-4cbe-a30b-e48acae8dc1f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6243972, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYO4ALNW/fastqc_report.html", "@id": "/quality-metrics-fastqc/fc5f488f-10bd-4cbe-a30b-e48acae8dc1f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2J3RMDG/@@download/4DNFI2J3RMDG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b3bd7db9-afad-45d2-bf7b-1d78c3f8629a/4DNFI2J3RMDG.fastq.gz", "@id": "/files-fastq/4DNFI2J3RMDG/", "display_title": "4DNFI2J3RMDG.fastq.gz", "md5sum": "db478fc01877184f3f83aff9187ad64b", "file_classification": "raw file", "upload_key": "b3bd7db9-afad-45d2-bf7b-1d78c3f8629a/4DNFI2J3RMDG.fastq.gz", "accession": "4DNFI2J3RMDG", "uuid": "b3bd7db9-afad-45d2-bf7b-1d78c3f8629a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 277183710, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0fbd5509-fbe9-44db-bf1c-e6cc6d8a8a85", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6064971, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2J3RMDG/fastqc_report.html", "@id": "/quality-metrics-fastqc/0fbd5509-fbe9-44db-bf1c-e6cc6d8a8a85/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILU6DCPL/@@download/4DNFILU6DCPL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/83f34a30-7e5c-42ec-b96f-3eb2d97d5005/4DNFILU6DCPL.fastq.gz", "@id": "/files-fastq/4DNFILU6DCPL/", "display_title": "4DNFILU6DCPL.fastq.gz", "md5sum": "ea3b5538da2a9bb828ad7a45631566e0", "file_classification": "raw file", "upload_key": "83f34a30-7e5c-42ec-b96f-3eb2d97d5005/4DNFILU6DCPL.fastq.gz", "accession": "4DNFILU6DCPL", "uuid": "83f34a30-7e5c-42ec-b96f-3eb2d97d5005", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 275837103, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dce4aa31-2219-4344-839d-94f66b2e9a5b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6065585, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILU6DCPL/fastqc_report.html", "@id": "/quality-metrics-fastqc/dce4aa31-2219-4344-839d-94f66b2e9a5b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5OOG164/@@download/4DNFI5OOG164.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bddf3982-7ee7-4f00-8294-f95f37baabf0/4DNFI5OOG164.fastq.gz", "@id": "/files-fastq/4DNFI5OOG164/", "display_title": "4DNFI5OOG164.fastq.gz", "md5sum": "64b2686fcdef7ee527b9cb373fa488ee", "file_classification": "raw file", "upload_key": "bddf3982-7ee7-4f00-8294-f95f37baabf0/4DNFI5OOG164.fastq.gz", "accession": "4DNFI5OOG164", "uuid": "bddf3982-7ee7-4f00-8294-f95f37baabf0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 187391674, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f9b9c29f-49cd-47da-82be-a8fbd195d4a5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4128681, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5OOG164/fastqc_report.html", "@id": "/quality-metrics-fastqc/f9b9c29f-49cd-47da-82be-a8fbd195d4a5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWL46KZD/@@download/4DNFIWL46KZD.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/209cff61-68a4-4f4c-973a-9f119474409e/4DNFIWL46KZD.fastq.gz", "@id": "/files-fastq/4DNFIWL46KZD/", "display_title": "4DNFIWL46KZD.fastq.gz", "md5sum": "4ca6357c5f8897cb4a2a845744bd7876", "file_classification": "raw file", "upload_key": "209cff61-68a4-4f4c-973a-9f119474409e/4DNFIWL46KZD.fastq.gz", "accession": "4DNFIWL46KZD", "uuid": "209cff61-68a4-4f4c-973a-9f119474409e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 297749315, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7e563533-4779-4f67-9ef7-04ee56fc9342", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6441786, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWL46KZD/fastqc_report.html", "@id": "/quality-metrics-fastqc/7e563533-4779-4f67-9ef7-04ee56fc9342/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7K555BK/@@download/4DNFI7K555BK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/1cdac013-0cee-4b39-b427-e28f9015df7b/4DNFI7K555BK.fastq.gz", "@id": "/files-fastq/4DNFI7K555BK/", "display_title": "4DNFI7K555BK.fastq.gz", "md5sum": "f414630a9a9306ea954000ec034eadbb", "file_classification": "raw file", "upload_key": "1cdac013-0cee-4b39-b427-e28f9015df7b/4DNFI7K555BK.fastq.gz", "accession": "4DNFI7K555BK", "uuid": "1cdac013-0cee-4b39-b427-e28f9015df7b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 303019488, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9ce4d639-cdf1-42b6-abc9-ef60fb119752", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6624675, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7K555BK/fastqc_report.html", "@id": "/quality-metrics-fastqc/9ce4d639-cdf1-42b6-abc9-ef60fb119752/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITRQWC8Q/@@download/4DNFITRQWC8Q.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8b5cac76-f8be-4f5e-9937-8cd52e0c1232/4DNFITRQWC8Q.fastq.gz", "@id": "/files-fastq/4DNFITRQWC8Q/", "display_title": "4DNFITRQWC8Q.fastq.gz", "md5sum": "a6be77f83b8781c49b99aabe4b5657c3", "file_classification": "raw file", "upload_key": "8b5cac76-f8be-4f5e-9937-8cd52e0c1232/4DNFITRQWC8Q.fastq.gz", "accession": "4DNFITRQWC8Q", "uuid": "8b5cac76-f8be-4f5e-9937-8cd52e0c1232", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 307041140, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "60d2cfb1-d6ea-436e-ae21-afcdd1eb86e0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6656194, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITRQWC8Q/fastqc_report.html", "@id": "/quality-metrics-fastqc/60d2cfb1-d6ea-436e-ae21-afcdd1eb86e0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIB5N281C/@@download/4DNFIB5N281C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/270e73f7-f27f-46a8-8cc4-6ef033eba6d1/4DNFIB5N281C.fastq.gz", "@id": "/files-fastq/4DNFIB5N281C/", "display_title": "4DNFIB5N281C.fastq.gz", "md5sum": "d97bf356b77fa2876be3b41f36bdcb6d", "file_classification": "raw file", "upload_key": "270e73f7-f27f-46a8-8cc4-6ef033eba6d1/4DNFIB5N281C.fastq.gz", "accession": "4DNFIB5N281C", "uuid": "270e73f7-f27f-46a8-8cc4-6ef033eba6d1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 269646538, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9235fac3-8ef3-429b-84db-f34344d1779a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5844392, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIB5N281C/fastqc_report.html", "@id": "/quality-metrics-fastqc/9235fac3-8ef3-429b-84db-f34344d1779a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFVZN6BF/@@download/4DNFIFVZN6BF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0b01944f-5376-4302-abe8-916daa045ace/4DNFIFVZN6BF.fastq.gz", "@id": "/files-fastq/4DNFIFVZN6BF/", "display_title": "4DNFIFVZN6BF.fastq.gz", "md5sum": "7ead0af02f35f947d1710b902835dd70", "file_classification": "raw file", "upload_key": "0b01944f-5376-4302-abe8-916daa045ace/4DNFIFVZN6BF.fastq.gz", "accession": "4DNFIFVZN6BF", "uuid": "0b01944f-5376-4302-abe8-916daa045ace", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 302991364, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3e63f983-35b3-46d6-b15c-3868b995a7b7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6596227, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFVZN6BF/fastqc_report.html", "@id": "/quality-metrics-fastqc/3e63f983-35b3-46d6-b15c-3868b995a7b7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIHLV2ZJ2/@@download/4DNFIHLV2ZJ2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3ab553c1-527a-4fd5-ac3d-53abee8309aa/4DNFIHLV2ZJ2.fastq.gz", "@id": "/files-fastq/4DNFIHLV2ZJ2/", "display_title": "4DNFIHLV2ZJ2.fastq.gz", "md5sum": "b087fb637d2786f5949a1f09d2dbb995", "file_classification": "raw file", "upload_key": "3ab553c1-527a-4fd5-ac3d-53abee8309aa/4DNFIHLV2ZJ2.fastq.gz", "accession": "4DNFIHLV2ZJ2", "uuid": "3ab553c1-527a-4fd5-ac3d-53abee8309aa", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 241657244, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e196d1b4-3a32-49ad-b292-a24fb08e3353", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5290907, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHLV2ZJ2/fastqc_report.html", "@id": "/quality-metrics-fastqc/e196d1b4-3a32-49ad-b292-a24fb08e3353/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRTRI1AJ/@@download/4DNFIRTRI1AJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b019744c-c9a3-49a6-ad03-aaef5a7621d1/4DNFIRTRI1AJ.fastq.gz", "@id": "/files-fastq/4DNFIRTRI1AJ/", "display_title": "4DNFIRTRI1AJ.fastq.gz", "md5sum": "094f18ef4498a429f82ae2e1e30eab2a", "file_classification": "raw file", "upload_key": "b019744c-c9a3-49a6-ad03-aaef5a7621d1/4DNFIRTRI1AJ.fastq.gz", "accession": "4DNFIRTRI1AJ", "uuid": "b019744c-c9a3-49a6-ad03-aaef5a7621d1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 220769918, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "76d63d23-0322-4996-9a70-49ee39bee38f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4754558, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRTRI1AJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/76d63d23-0322-4996-9a70-49ee39bee38f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICQ6VPRZ/@@download/4DNFICQ6VPRZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5c905adb-abda-4bfb-ba8a-3f139a5b1ee3/4DNFICQ6VPRZ.fastq.gz", "@id": "/files-fastq/4DNFICQ6VPRZ/", "display_title": "4DNFICQ6VPRZ.fastq.gz", "md5sum": "9374f1c20c0de117f891476e11902bd8", "file_classification": "raw file", "upload_key": "5c905adb-abda-4bfb-ba8a-3f139a5b1ee3/4DNFICQ6VPRZ.fastq.gz", "accession": "4DNFICQ6VPRZ", "uuid": "5c905adb-abda-4bfb-ba8a-3f139a5b1ee3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 221021911, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ef120b56-f2ae-4862-8e38-db3537dc5138", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4760303, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICQ6VPRZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/ef120b56-f2ae-4862-8e38-db3537dc5138/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINEGD3ZU/@@download/4DNFINEGD3ZU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/34002e98-17b1-49d6-849d-c840a7a8647b/4DNFINEGD3ZU.fastq.gz", "@id": "/files-fastq/4DNFINEGD3ZU/", "display_title": "4DNFINEGD3ZU.fastq.gz", "md5sum": "5f833e281c4dd2c329290b36af90100b", "file_classification": "raw file", "upload_key": "34002e98-17b1-49d6-849d-c840a7a8647b/4DNFINEGD3ZU.fastq.gz", "accession": "4DNFINEGD3ZU", "uuid": "34002e98-17b1-49d6-849d-c840a7a8647b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 458816331, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d68899c2-a423-40e3-a9bb-81eee4bac500", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 9930288, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINEGD3ZU/fastqc_report.html", "@id": "/quality-metrics-fastqc/d68899c2-a423-40e3-a9bb-81eee4bac500/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIX4RMJE9/@@download/4DNFIX4RMJE9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/95bd5f6a-f6a8-4ace-af3f-67e7ce80af78/4DNFIX4RMJE9.fastq.gz", "@id": "/files-fastq/4DNFIX4RMJE9/", "display_title": "4DNFIX4RMJE9.fastq.gz", "md5sum": "16c1464117f1f6edb8b362b4441b35de", "file_classification": "raw file", "upload_key": "95bd5f6a-f6a8-4ace-af3f-67e7ce80af78/4DNFIX4RMJE9.fastq.gz", "accession": "4DNFIX4RMJE9", "uuid": "95bd5f6a-f6a8-4ace-af3f-67e7ce80af78", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 494789321, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bf265296-3940-4ab6-aadc-0ebb05c7454c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 10731355, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX4RMJE9/fastqc_report.html", "@id": "/quality-metrics-fastqc/bf265296-3940-4ab6-aadc-0ebb05c7454c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3925KR2/@@download/4DNFI3925KR2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/3ea20e8a-2407-44fb-b784-499e89dddaf1/4DNFI3925KR2.fastq.gz", "@id": "/files-fastq/4DNFI3925KR2/", "display_title": "4DNFI3925KR2.fastq.gz", "md5sum": "ffbaef36c7f8bc82831aa74900d453e7", "file_classification": "raw file", "upload_key": "3ea20e8a-2407-44fb-b784-499e89dddaf1/4DNFI3925KR2.fastq.gz", "accession": "4DNFI3925KR2", "uuid": "3ea20e8a-2407-44fb-b784-499e89dddaf1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 214774568, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "948ef175-940c-42fc-8cdd-9ab455e0bda7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4650564, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3925KR2/fastqc_report.html", "@id": "/quality-metrics-fastqc/948ef175-940c-42fc-8cdd-9ab455e0bda7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI14N7SBY/@@download/4DNFI14N7SBY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/43b5d3c2-ec05-454d-9316-dff8122e78af/4DNFI14N7SBY.fastq.gz", "@id": "/files-fastq/4DNFI14N7SBY/", "display_title": "4DNFI14N7SBY.fastq.gz", "md5sum": "806ed867c39a333c2182375f8ae49779", "file_classification": "raw file", "upload_key": "43b5d3c2-ec05-454d-9316-dff8122e78af/4DNFI14N7SBY.fastq.gz", "accession": "4DNFI14N7SBY", "uuid": "43b5d3c2-ec05-454d-9316-dff8122e78af", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 181488227, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "39e41da9-1458-41be-be9f-5b4df727bebe", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3930682, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI14N7SBY/fastqc_report.html", "@id": "/quality-metrics-fastqc/39e41da9-1458-41be-be9f-5b4df727bebe/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISCEHDCK/@@download/4DNFISCEHDCK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4ae62923-abb3-4504-8d08-787faf88360b/4DNFISCEHDCK.fastq.gz", "@id": "/files-fastq/4DNFISCEHDCK/", "display_title": "4DNFISCEHDCK.fastq.gz", "md5sum": "e49c211ed3f82885175f0612f69bc0a8", "file_classification": "raw file", "upload_key": "4ae62923-abb3-4504-8d08-787faf88360b/4DNFISCEHDCK.fastq.gz", "accession": "4DNFISCEHDCK", "uuid": "4ae62923-abb3-4504-8d08-787faf88360b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 334245648, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "23ecf842-c34a-4ab2-bef7-f24fbf4199f4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7339482, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISCEHDCK/fastqc_report.html", "@id": "/quality-metrics-fastqc/23ecf842-c34a-4ab2-bef7-f24fbf4199f4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYSKKZR3/@@download/4DNFIYSKKZR3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/54e8daa1-66d6-40cc-85e1-e35a0a32fd94/4DNFIYSKKZR3.fastq.gz", "@id": "/files-fastq/4DNFIYSKKZR3/", "display_title": "4DNFIYSKKZR3.fastq.gz", "md5sum": "214377cc84855f90747afb82496c01bb", "file_classification": "raw file", "upload_key": "54e8daa1-66d6-40cc-85e1-e35a0a32fd94/4DNFIYSKKZR3.fastq.gz", "accession": "4DNFIYSKKZR3", "uuid": "54e8daa1-66d6-40cc-85e1-e35a0a32fd94", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 283582370, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9f36df7a-346b-435e-a172-68b8d2b0ea02", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6194068, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYSKKZR3/fastqc_report.html", "@id": "/quality-metrics-fastqc/9f36df7a-346b-435e-a172-68b8d2b0ea02/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISA66FC4/@@download/4DNFISA66FC4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b74555b1-e32e-48e2-a404-961c3418bf9a/4DNFISA66FC4.fastq.gz", "@id": "/files-fastq/4DNFISA66FC4/", "display_title": "4DNFISA66FC4.fastq.gz", "md5sum": "6cc9464b09752edfad2885221829c4b5", "file_classification": "raw file", "upload_key": "b74555b1-e32e-48e2-a404-961c3418bf9a/4DNFISA66FC4.fastq.gz", "accession": "4DNFISA66FC4", "uuid": "b74555b1-e32e-48e2-a404-961c3418bf9a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 236147140, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fb6803fd-31c4-4f08-951d-45f070b30d8f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5081533, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISA66FC4/fastqc_report.html", "@id": "/quality-metrics-fastqc/fb6803fd-31c4-4f08-951d-45f070b30d8f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI466NR7T/@@download/4DNFI466NR7T.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/28a61fc9-f562-486e-ba6d-6783c16ac0ba/4DNFI466NR7T.fastq.gz", "@id": "/files-fastq/4DNFI466NR7T/", "display_title": "4DNFI466NR7T.fastq.gz", "md5sum": "aae958c2875550036f0ce427ba05cfb7", "file_classification": "raw file", "upload_key": "28a61fc9-f562-486e-ba6d-6783c16ac0ba/4DNFI466NR7T.fastq.gz", "accession": "4DNFI466NR7T", "uuid": "28a61fc9-f562-486e-ba6d-6783c16ac0ba", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 247900152, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a86c9918-5102-4cd9-b0a6-d66de055987e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5375896, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI466NR7T/fastqc_report.html", "@id": "/quality-metrics-fastqc/a86c9918-5102-4cd9-b0a6-d66de055987e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFINXLG1HT/@@download/4DNFINXLG1HT.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/69a2bf65-82da-4adb-91ff-f2a2b45b966d/4DNFINXLG1HT.fastq.gz", "@id": "/files-fastq/4DNFINXLG1HT/", "display_title": "4DNFINXLG1HT.fastq.gz", "md5sum": "a77ad43e65ba816d905977e5bc534633", "file_classification": "raw file", "upload_key": "69a2bf65-82da-4adb-91ff-f2a2b45b966d/4DNFINXLG1HT.fastq.gz", "accession": "4DNFINXLG1HT", "uuid": "69a2bf65-82da-4adb-91ff-f2a2b45b966d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264160968, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3a9e6253-9b12-4008-9870-d1430df0963a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5776663, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINXLG1HT/fastqc_report.html", "@id": "/quality-metrics-fastqc/3a9e6253-9b12-4008-9870-d1430df0963a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVTUYDNO/@@download/4DNFIVTUYDNO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f325a157-0280-49b4-af80-a353122aba58/4DNFIVTUYDNO.fastq.gz", "@id": "/files-fastq/4DNFIVTUYDNO/", "display_title": "4DNFIVTUYDNO.fastq.gz", "md5sum": "d742a97daa6208e31e363dca7e3ad709", "file_classification": "raw file", "upload_key": "f325a157-0280-49b4-af80-a353122aba58/4DNFIVTUYDNO.fastq.gz", "accession": "4DNFIVTUYDNO", "uuid": "f325a157-0280-49b4-af80-a353122aba58", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 207277421, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "571748e6-d93b-49f4-943e-49182c3f3e8b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4545253, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVTUYDNO/fastqc_report.html", "@id": "/quality-metrics-fastqc/571748e6-d93b-49f4-943e-49182c3f3e8b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRQY171N/@@download/4DNFIRQY171N.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/50eed090-47ad-41b6-bb37-604ca4976328/4DNFIRQY171N.fastq.gz", "@id": "/files-fastq/4DNFIRQY171N/", "display_title": "4DNFIRQY171N.fastq.gz", "md5sum": "55d1bb3e27154f1da3620079420127d2", "file_classification": "raw file", "upload_key": "50eed090-47ad-41b6-bb37-604ca4976328/4DNFIRQY171N.fastq.gz", "accession": "4DNFIRQY171N", "uuid": "50eed090-47ad-41b6-bb37-604ca4976328", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 297088264, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c5f6940d-e719-4d52-903c-9394eda7adff", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6597444, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRQY171N/fastqc_report.html", "@id": "/quality-metrics-fastqc/c5f6940d-e719-4d52-903c-9394eda7adff/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZISXG89/@@download/4DNFIZISXG89.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/886b04ea-a3d3-4d08-a993-7a450d56cd2e/4DNFIZISXG89.fastq.gz", "@id": "/files-fastq/4DNFIZISXG89/", "display_title": "4DNFIZISXG89.fastq.gz", "md5sum": "68354f8969eeb8f74298046064a627f5", "file_classification": "raw file", "upload_key": "886b04ea-a3d3-4d08-a993-7a450d56cd2e/4DNFIZISXG89.fastq.gz", "accession": "4DNFIZISXG89", "uuid": "886b04ea-a3d3-4d08-a993-7a450d56cd2e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 280762760, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8655389f-dd16-4d92-bb63-80afac3c2b8f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6153630, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZISXG89/fastqc_report.html", "@id": "/quality-metrics-fastqc/8655389f-dd16-4d92-bb63-80afac3c2b8f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISZKWLSS/@@download/4DNFISZKWLSS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b337fc61-b8be-4174-9418-06b55f116d7a/4DNFISZKWLSS.fastq.gz", "@id": "/files-fastq/4DNFISZKWLSS/", "display_title": "4DNFISZKWLSS.fastq.gz", "md5sum": "a6e3bdd14265c02d82ec9c4a754d5e7d", "file_classification": "raw file", "upload_key": "b337fc61-b8be-4174-9418-06b55f116d7a/4DNFISZKWLSS.fastq.gz", "accession": "4DNFISZKWLSS", "uuid": "b337fc61-b8be-4174-9418-06b55f116d7a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 277027866, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b2140b6d-f04f-492e-b6c0-b18a7b4eee67", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6053475, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISZKWLSS/fastqc_report.html", "@id": "/quality-metrics-fastqc/b2140b6d-f04f-492e-b6c0-b18a7b4eee67/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIS2VALO7/@@download/4DNFIS2VALO7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a4ed70f4-8a4a-403b-9357-f9f3ec877e4c/4DNFIS2VALO7.fastq.gz", "@id": "/files-fastq/4DNFIS2VALO7/", "display_title": "4DNFIS2VALO7.fastq.gz", "md5sum": "17cf968251dbf1a4ccde1d5686add6d3", "file_classification": "raw file", "upload_key": "a4ed70f4-8a4a-403b-9357-f9f3ec877e4c/4DNFIS2VALO7.fastq.gz", "accession": "4DNFIS2VALO7", "uuid": "a4ed70f4-8a4a-403b-9357-f9f3ec877e4c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264575481, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "97dc124f-ea0a-493a-b790-39b6deed8d94", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5802535, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIS2VALO7/fastqc_report.html", "@id": "/quality-metrics-fastqc/97dc124f-ea0a-493a-b790-39b6deed8d94/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJN29Z2O/@@download/4DNFIJN29Z2O.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ff1d7879-1e61-40fc-b4b6-873e95fe53ad/4DNFIJN29Z2O.fastq.gz", "@id": "/files-fastq/4DNFIJN29Z2O/", "display_title": "4DNFIJN29Z2O.fastq.gz", "md5sum": "0e4e3c4152d002a58d4ff105d02a027a", "file_classification": "raw file", "upload_key": "ff1d7879-1e61-40fc-b4b6-873e95fe53ad/4DNFIJN29Z2O.fastq.gz", "accession": "4DNFIJN29Z2O", "uuid": "ff1d7879-1e61-40fc-b4b6-873e95fe53ad", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 284436483, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d48ae8a7-e14b-48da-a6dd-30f1e1036d04", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6265732, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJN29Z2O/fastqc_report.html", "@id": "/quality-metrics-fastqc/d48ae8a7-e14b-48da-a6dd-30f1e1036d04/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISQQPQNZ/@@download/4DNFISQQPQNZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f8874229-5aba-446d-8fc0-717b3d47d8c2/4DNFISQQPQNZ.fastq.gz", "@id": "/files-fastq/4DNFISQQPQNZ/", "display_title": "4DNFISQQPQNZ.fastq.gz", "md5sum": "0a2a09791798ef46f4f910a836a989bc", "file_classification": "raw file", "upload_key": "f8874229-5aba-446d-8fc0-717b3d47d8c2/4DNFISQQPQNZ.fastq.gz", "accession": "4DNFISQQPQNZ", "uuid": "f8874229-5aba-446d-8fc0-717b3d47d8c2", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 225615979, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b655309e-c6c8-41f8-bd6a-5bd66900b3eb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4989327, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISQQPQNZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/b655309e-c6c8-41f8-bd6a-5bd66900b3eb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPOLE78D/@@download/4DNFIPOLE78D.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9c246fd2-3514-4df3-9014-d97f4fc4cbdf/4DNFIPOLE78D.fastq.gz", "@id": "/files-fastq/4DNFIPOLE78D/", "display_title": "4DNFIPOLE78D.fastq.gz", "md5sum": "cdac2a3e62d9bb37f13e60fe8f153ee0", "file_classification": "raw file", "upload_key": "9c246fd2-3514-4df3-9014-d97f4fc4cbdf/4DNFIPOLE78D.fastq.gz", "accession": "4DNFIPOLE78D", "uuid": "9c246fd2-3514-4df3-9014-d97f4fc4cbdf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 273718815, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "24d0276c-09f8-43af-8ffe-d983b72fc2fc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5999363, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPOLE78D/fastqc_report.html", "@id": "/quality-metrics-fastqc/24d0276c-09f8-43af-8ffe-d983b72fc2fc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRRTRW7F/@@download/4DNFIRRTRW7F.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2beced9b-0406-42ef-b39a-1f9e91617493/4DNFIRRTRW7F.fastq.gz", "@id": "/files-fastq/4DNFIRRTRW7F/", "display_title": "4DNFIRRTRW7F.fastq.gz", "md5sum": "f28d0e51adff7da82364eb72b06bcdf9", "file_classification": "raw file", "upload_key": "2beced9b-0406-42ef-b39a-1f9e91617493/4DNFIRRTRW7F.fastq.gz", "accession": "4DNFIRRTRW7F", "uuid": "2beced9b-0406-42ef-b39a-1f9e91617493", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 295734875, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "70e7feac-2dab-4263-9d83-dc4ff660ef18", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6488205, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRRTRW7F/fastqc_report.html", "@id": "/quality-metrics-fastqc/70e7feac-2dab-4263-9d83-dc4ff660ef18/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIATV9BTH/@@download/4DNFIATV9BTH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0114eac2-3ad5-45d4-bdc2-e7730099c15e/4DNFIATV9BTH.fastq.gz", "@id": "/files-fastq/4DNFIATV9BTH/", "display_title": "4DNFIATV9BTH.fastq.gz", "md5sum": "b7bd6ab7ca52849db9e171450977f1e8", "file_classification": "raw file", "upload_key": "0114eac2-3ad5-45d4-bdc2-e7730099c15e/4DNFIATV9BTH.fastq.gz", "accession": "4DNFIATV9BTH", "uuid": "0114eac2-3ad5-45d4-bdc2-e7730099c15e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 163769904, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b2401798-d458-49c4-ab86-cd679ba27be0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3351879, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIATV9BTH/fastqc_report.html", "@id": "/quality-metrics-fastqc/b2401798-d458-49c4-ab86-cd679ba27be0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIX1EHJWF/@@download/4DNFIX1EHJWF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4e0a4332-7d7b-481a-97a4-536ab68ff459/4DNFIX1EHJWF.fastq.gz", "@id": "/files-fastq/4DNFIX1EHJWF/", "display_title": "4DNFIX1EHJWF.fastq.gz", "md5sum": "97f61d4c0c3b1e0cb0f2f038ad678890", "file_classification": "raw file", "upload_key": "4e0a4332-7d7b-481a-97a4-536ab68ff459/4DNFIX1EHJWF.fastq.gz", "accession": "4DNFIX1EHJWF", "uuid": "4e0a4332-7d7b-481a-97a4-536ab68ff459", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 267608279, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bd968122-28fa-414b-a126-b36830d93e92", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5860552, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX1EHJWF/fastqc_report.html", "@id": "/quality-metrics-fastqc/bd968122-28fa-414b-a126-b36830d93e92/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI487CPTH/@@download/4DNFI487CPTH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/62050d7d-d912-4492-b69e-3daf26fb614a/4DNFI487CPTH.fastq.gz", "@id": "/files-fastq/4DNFI487CPTH/", "display_title": "4DNFI487CPTH.fastq.gz", "md5sum": "50aa49597e51126fa0be264f0f582155", "file_classification": "raw file", "upload_key": "62050d7d-d912-4492-b69e-3daf26fb614a/4DNFI487CPTH.fastq.gz", "accession": "4DNFI487CPTH", "uuid": "62050d7d-d912-4492-b69e-3daf26fb614a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 275219560, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cf808726-be79-4095-b0f3-3037d6a1242c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6062207, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI487CPTH/fastqc_report.html", "@id": "/quality-metrics-fastqc/cf808726-be79-4095-b0f3-3037d6a1242c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPAYHAMJ/@@download/4DNFIPAYHAMJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/963247eb-f657-44d3-ba67-ea0f62fe1912/4DNFIPAYHAMJ.fastq.gz", "@id": "/files-fastq/4DNFIPAYHAMJ/", "display_title": "4DNFIPAYHAMJ.fastq.gz", "md5sum": "cdaf7accac2d4e9e07b94b0fbd4a561e", "file_classification": "raw file", "upload_key": "963247eb-f657-44d3-ba67-ea0f62fe1912/4DNFIPAYHAMJ.fastq.gz", "accession": "4DNFIPAYHAMJ", "uuid": "963247eb-f657-44d3-ba67-ea0f62fe1912", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 179833894, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "df8fd71a-2b0b-4170-88ac-1513503cc4b7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4001091, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPAYHAMJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/df8fd71a-2b0b-4170-88ac-1513503cc4b7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGCCG31N/@@download/4DNFIGCCG31N.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d75ec6ce-5d7a-4bf6-b8a0-b60ed75f36b6/4DNFIGCCG31N.fastq.gz", "@id": "/files-fastq/4DNFIGCCG31N/", "display_title": "4DNFIGCCG31N.fastq.gz", "md5sum": "c4e9400dd5f0cf867f9a59fc58478122", "file_classification": "raw file", "upload_key": "d75ec6ce-5d7a-4bf6-b8a0-b60ed75f36b6/4DNFIGCCG31N.fastq.gz", "accession": "4DNFIGCCG31N", "uuid": "d75ec6ce-5d7a-4bf6-b8a0-b60ed75f36b6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 277887925, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d67d3a58-a4d9-4e4c-a126-d86b9be874cb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6119593, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGCCG31N/fastqc_report.html", "@id": "/quality-metrics-fastqc/d67d3a58-a4d9-4e4c-a126-d86b9be874cb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIE7AG217/@@download/4DNFIE7AG217.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/15c16107-beee-4b2a-96a5-576cf622aa44/4DNFIE7AG217.fastq.gz", "@id": "/files-fastq/4DNFIE7AG217/", "display_title": "4DNFIE7AG217.fastq.gz", "md5sum": "cf410ad0550ad2e6a1f5487dcab80f4b", "file_classification": "raw file", "upload_key": "15c16107-beee-4b2a-96a5-576cf622aa44/4DNFIE7AG217.fastq.gz", "accession": "4DNFIE7AG217", "uuid": "15c16107-beee-4b2a-96a5-576cf622aa44", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 272440369, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "961a7e97-4f39-4424-86d6-0df8b3f36584", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5965221, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIE7AG217/fastqc_report.html", "@id": "/quality-metrics-fastqc/961a7e97-4f39-4424-86d6-0df8b3f36584/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMB7KUTJ/@@download/4DNFIMB7KUTJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f631e91e-79f5-4868-8406-818206f3ea98/4DNFIMB7KUTJ.fastq.gz", "@id": "/files-fastq/4DNFIMB7KUTJ/", "display_title": "4DNFIMB7KUTJ.fastq.gz", "md5sum": "ae624eb56d1182862ae81c28ab49e87b", "file_classification": "raw file", "upload_key": "f631e91e-79f5-4868-8406-818206f3ea98/4DNFIMB7KUTJ.fastq.gz", "accession": "4DNFIMB7KUTJ", "uuid": "f631e91e-79f5-4868-8406-818206f3ea98", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 267442744, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e80830d5-05ed-446b-9b50-229b83bb1f9b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5875028, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMB7KUTJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/e80830d5-05ed-446b-9b50-229b83bb1f9b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI116MYRZ/@@download/4DNFI116MYRZ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/593dd895-4cff-4d15-8716-2df70835c03f/4DNFI116MYRZ.fastq.gz", "@id": "/files-fastq/4DNFI116MYRZ/", "display_title": "4DNFI116MYRZ.fastq.gz", "md5sum": "7414d76f399e3e7be85e9d39fe5ea6e5", "file_classification": "raw file", "upload_key": "593dd895-4cff-4d15-8716-2df70835c03f/4DNFI116MYRZ.fastq.gz", "accession": "4DNFI116MYRZ", "uuid": "593dd895-4cff-4d15-8716-2df70835c03f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 268188321, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e49ce38a-7d73-45fd-a22a-835da2181a9b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5889915, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI116MYRZ/fastqc_report.html", "@id": "/quality-metrics-fastqc/e49ce38a-7d73-45fd-a22a-835da2181a9b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJGQJP7F/@@download/4DNFIJGQJP7F.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/28df6b1e-da18-449d-a57e-831b3abb2a6e/4DNFIJGQJP7F.fastq.gz", "@id": "/files-fastq/4DNFIJGQJP7F/", "display_title": "4DNFIJGQJP7F.fastq.gz", "md5sum": "2b50b9d6f310235a1bb6194ea01a8d33", "file_classification": "raw file", "upload_key": "28df6b1e-da18-449d-a57e-831b3abb2a6e/4DNFIJGQJP7F.fastq.gz", "accession": "4DNFIJGQJP7F", "uuid": "28df6b1e-da18-449d-a57e-831b3abb2a6e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264176495, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3262efa9-7d05-4761-abaf-9dcd189c3c34", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5781412, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJGQJP7F/fastqc_report.html", "@id": "/quality-metrics-fastqc/3262efa9-7d05-4761-abaf-9dcd189c3c34/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQXOTRTC/@@download/4DNFIQXOTRTC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/38e441ac-34e5-4fb0-824e-88285da5463d/4DNFIQXOTRTC.fastq.gz", "@id": "/files-fastq/4DNFIQXOTRTC/", "display_title": "4DNFIQXOTRTC.fastq.gz", "md5sum": "38e1b2111be05221c401b72bd39a6e71", "file_classification": "raw file", "upload_key": "38e441ac-34e5-4fb0-824e-88285da5463d/4DNFIQXOTRTC.fastq.gz", "accession": "4DNFIQXOTRTC", "uuid": "38e441ac-34e5-4fb0-824e-88285da5463d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 240712519, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "26131afa-b96a-44bc-8a8f-ca1d44c53602", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5320878, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQXOTRTC/fastqc_report.html", "@id": "/quality-metrics-fastqc/26131afa-b96a-44bc-8a8f-ca1d44c53602/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQLEPA7I/@@download/4DNFIQLEPA7I.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/45305c71-e433-40f2-a825-fbe8a1508b91/4DNFIQLEPA7I.fastq.gz", "@id": "/files-fastq/4DNFIQLEPA7I/", "display_title": "4DNFIQLEPA7I.fastq.gz", "md5sum": "7cb4b71913536becfa7aec0b099b3918", "file_classification": "raw file", "upload_key": "45305c71-e433-40f2-a825-fbe8a1508b91/4DNFIQLEPA7I.fastq.gz", "accession": "4DNFIQLEPA7I", "uuid": "45305c71-e433-40f2-a825-fbe8a1508b91", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 234487443, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cb660c12-860d-4150-99a7-7701c7828c8a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4791015, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQLEPA7I/fastqc_report.html", "@id": "/quality-metrics-fastqc/cb660c12-860d-4150-99a7-7701c7828c8a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYJNDOJJ/@@download/4DNFIYJNDOJJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/329c56be-73ec-4f88-8c56-5911258c4b6a/4DNFIYJNDOJJ.fastq.gz", "@id": "/files-fastq/4DNFIYJNDOJJ/", "display_title": "4DNFIYJNDOJJ.fastq.gz", "md5sum": "b920380ccaa63ae8b8ae5acf7d49288f", "file_classification": "raw file", "upload_key": "329c56be-73ec-4f88-8c56-5911258c4b6a/4DNFIYJNDOJJ.fastq.gz", "accession": "4DNFIYJNDOJJ", "uuid": "329c56be-73ec-4f88-8c56-5911258c4b6a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 286268941, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8a3b232d-1941-4f0e-abf8-d978ee662c0e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5698321, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYJNDOJJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/8a3b232d-1941-4f0e-abf8-d978ee662c0e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICQL6E87/@@download/4DNFICQL6E87.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9e6f8560-b7ec-403d-89b1-cd237d80a92c/4DNFICQL6E87.fastq.gz", "@id": "/files-fastq/4DNFICQL6E87/", "display_title": "4DNFICQL6E87.fastq.gz", "md5sum": "598834ace123a77e623728c3aa411270", "file_classification": "raw file", "upload_key": "9e6f8560-b7ec-403d-89b1-cd237d80a92c/4DNFICQL6E87.fastq.gz", "accession": "4DNFICQL6E87", "uuid": "9e6f8560-b7ec-403d-89b1-cd237d80a92c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 339283733, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "301d9144-d62e-4db9-8fda-261e8301f6e1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 7171723, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICQL6E87/fastqc_report.html", "@id": "/quality-metrics-fastqc/301d9144-d62e-4db9-8fda-261e8301f6e1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7B2X8XH/@@download/4DNFI7B2X8XH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e420188b-9d7b-4f7c-92ed-5da39f1fad5a/4DNFI7B2X8XH.fastq.gz", "@id": "/files-fastq/4DNFI7B2X8XH/", "display_title": "4DNFI7B2X8XH.fastq.gz", "md5sum": "9d394c207e838b8c690ef95792a859be", "file_classification": "raw file", "upload_key": "e420188b-9d7b-4f7c-92ed-5da39f1fad5a/4DNFI7B2X8XH.fastq.gz", "accession": "4DNFI7B2X8XH", "uuid": "e420188b-9d7b-4f7c-92ed-5da39f1fad5a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 115990519, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "da1808b9-8597-4368-8104-94474fc59bc4", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2256568, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7B2X8XH/fastqc_report.html", "@id": "/quality-metrics-fastqc/da1808b9-8597-4368-8104-94474fc59bc4/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVDJVKYU/@@download/4DNFIVDJVKYU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a68d448a-31f8-407e-8062-70859e53102b/4DNFIVDJVKYU.fastq.gz", "@id": "/files-fastq/4DNFIVDJVKYU/", "display_title": "4DNFIVDJVKYU.fastq.gz", "md5sum": "391083417a2ba66d9894e83da3618347", "file_classification": "raw file", "upload_key": "a68d448a-31f8-407e-8062-70859e53102b/4DNFIVDJVKYU.fastq.gz", "accession": "4DNFIVDJVKYU", "uuid": "a68d448a-31f8-407e-8062-70859e53102b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 283949248, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "225a4c31-341e-4f0d-878d-2e13ed7ec894", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5675064, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVDJVKYU/fastqc_report.html", "@id": "/quality-metrics-fastqc/225a4c31-341e-4f0d-878d-2e13ed7ec894/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVI76BFW/@@download/4DNFIVI76BFW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/855d6c86-195a-4a1a-89cb-bf121ac371cb/4DNFIVI76BFW.fastq.gz", "@id": "/files-fastq/4DNFIVI76BFW/", "display_title": "4DNFIVI76BFW.fastq.gz", "md5sum": "0aaed3b7544b7e2584f9e807a49ec588", "file_classification": "raw file", "upload_key": "855d6c86-195a-4a1a-89cb-bf121ac371cb/4DNFIVI76BFW.fastq.gz", "accession": "4DNFIVI76BFW", "uuid": "855d6c86-195a-4a1a-89cb-bf121ac371cb", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 299000934, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "a6d262f0-1682-47da-8d76-4242ef260762", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6058290, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVI76BFW/fastqc_report.html", "@id": "/quality-metrics-fastqc/a6d262f0-1682-47da-8d76-4242ef260762/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYFYR83M/@@download/4DNFIYFYR83M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d251ccff-c80e-4167-86d4-dda845a85564/4DNFIYFYR83M.fastq.gz", "@id": "/files-fastq/4DNFIYFYR83M/", "display_title": "4DNFIYFYR83M.fastq.gz", "md5sum": "d1b7dafa856259d5ebfd272cad4bf70d", "file_classification": "raw file", "upload_key": "d251ccff-c80e-4167-86d4-dda845a85564/4DNFIYFYR83M.fastq.gz", "accession": "4DNFIYFYR83M", "uuid": "d251ccff-c80e-4167-86d4-dda845a85564", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 279910497, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1f0da4de-2cf2-444e-aa62-df1d9ddf46ab", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5568241, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYFYR83M/fastqc_report.html", "@id": "/quality-metrics-fastqc/1f0da4de-2cf2-444e-aa62-df1d9ddf46ab/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI47OFEYH/@@download/4DNFI47OFEYH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8aa9d3d4-17a7-4eba-99bb-dfc6ce0fbad5/4DNFI47OFEYH.fastq.gz", "@id": "/files-fastq/4DNFI47OFEYH/", "display_title": "4DNFI47OFEYH.fastq.gz", "md5sum": "a8da00a79d64bac92efff56d88839560", "file_classification": "raw file", "upload_key": "8aa9d3d4-17a7-4eba-99bb-dfc6ce0fbad5/4DNFI47OFEYH.fastq.gz", "accession": "4DNFI47OFEYH", "uuid": "8aa9d3d4-17a7-4eba-99bb-dfc6ce0fbad5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264712427, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "16855314-5e37-4a8e-aa33-47a2b5d32e00", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5256805, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI47OFEYH/fastqc_report.html", "@id": "/quality-metrics-fastqc/16855314-5e37-4a8e-aa33-47a2b5d32e00/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVXVUJRT/@@download/4DNFIVXVUJRT.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e5ea1e44-dfb7-4372-93ee-f9bdc2e34b71/4DNFIVXVUJRT.fastq.gz", "@id": "/files-fastq/4DNFIVXVUJRT/", "display_title": "4DNFIVXVUJRT.fastq.gz", "md5sum": "59bc810d571723cad38897dc505c26d0", "file_classification": "raw file", "upload_key": "e5ea1e44-dfb7-4372-93ee-f9bdc2e34b71/4DNFIVXVUJRT.fastq.gz", "accession": "4DNFIVXVUJRT", "uuid": "e5ea1e44-dfb7-4372-93ee-f9bdc2e34b71", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 225359883, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7f6a6701-aeee-412d-b7bf-de7176e958ca", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4433011, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVXVUJRT/fastqc_report.html", "@id": "/quality-metrics-fastqc/7f6a6701-aeee-412d-b7bf-de7176e958ca/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5FCMMJV/@@download/4DNFI5FCMMJV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7f0fdb48-0b49-43ae-ac98-dafc1018aab4/4DNFI5FCMMJV.fastq.gz", "@id": "/files-fastq/4DNFI5FCMMJV/", "display_title": "4DNFI5FCMMJV.fastq.gz", "md5sum": "c23a4764bba08d178850aa5ff2e6deb9", "file_classification": "raw file", "upload_key": "7f0fdb48-0b49-43ae-ac98-dafc1018aab4/4DNFI5FCMMJV.fastq.gz", "accession": "4DNFI5FCMMJV", "uuid": "7f0fdb48-0b49-43ae-ac98-dafc1018aab4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 275173048, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "128f9cdd-209f-460b-9f8b-640bacaf552d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5453540, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5FCMMJV/fastqc_report.html", "@id": "/quality-metrics-fastqc/128f9cdd-209f-460b-9f8b-640bacaf552d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3TF2BX7/@@download/4DNFI3TF2BX7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/05b0d1e4-122c-488a-9df0-82fbb41386d4/4DNFI3TF2BX7.fastq.gz", "@id": "/files-fastq/4DNFI3TF2BX7/", "display_title": "4DNFI3TF2BX7.fastq.gz", "md5sum": "ee04fbc9c851af01dc04a54309328447", "file_classification": "raw file", "upload_key": "05b0d1e4-122c-488a-9df0-82fbb41386d4/4DNFI3TF2BX7.fastq.gz", "accession": "4DNFI3TF2BX7", "uuid": "05b0d1e4-122c-488a-9df0-82fbb41386d4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 265723491, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "eef62dce-5f64-4586-bc18-064131ecb0eb", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5230292, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3TF2BX7/fastqc_report.html", "@id": "/quality-metrics-fastqc/eef62dce-5f64-4586-bc18-064131ecb0eb/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILMUW438/@@download/4DNFILMUW438.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/56d36535-2e1c-44ff-99ab-cc25c28e6928/4DNFILMUW438.fastq.gz", "@id": "/files-fastq/4DNFILMUW438/", "display_title": "4DNFILMUW438.fastq.gz", "md5sum": "17cee012993758faaedeae60bd281c4d", "file_classification": "raw file", "upload_key": "56d36535-2e1c-44ff-99ab-cc25c28e6928/4DNFILMUW438.fastq.gz", "accession": "4DNFILMUW438", "uuid": "56d36535-2e1c-44ff-99ab-cc25c28e6928", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 298219067, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f8976a64-f602-49c7-8851-f6ca22fb3058", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5987029, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILMUW438/fastqc_report.html", "@id": "/quality-metrics-fastqc/f8976a64-f602-49c7-8851-f6ca22fb3058/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIA1C973G/@@download/4DNFIA1C973G.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8169853d-45c5-45cb-85ba-45b805995d81/4DNFIA1C973G.fastq.gz", "@id": "/files-fastq/4DNFIA1C973G/", "display_title": "4DNFIA1C973G.fastq.gz", "md5sum": "77ca30475ed1c85575174b9f6fb973fd", "file_classification": "raw file", "upload_key": "8169853d-45c5-45cb-85ba-45b805995d81/4DNFIA1C973G.fastq.gz", "accession": "4DNFIA1C973G", "uuid": "8169853d-45c5-45cb-85ba-45b805995d81", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 291722897, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8326c949-a507-4633-a895-0d71295602a2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5747169, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA1C973G/fastqc_report.html", "@id": "/quality-metrics-fastqc/8326c949-a507-4633-a895-0d71295602a2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZ3F2EIP/@@download/4DNFIZ3F2EIP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e91998a8-574b-401f-9c1d-05856c68df29/4DNFIZ3F2EIP.fastq.gz", "@id": "/files-fastq/4DNFIZ3F2EIP/", "display_title": "4DNFIZ3F2EIP.fastq.gz", "md5sum": "7bba145840cfbad03bfced8250f6cbe0", "file_classification": "raw file", "upload_key": "e91998a8-574b-401f-9c1d-05856c68df29/4DNFIZ3F2EIP.fastq.gz", "accession": "4DNFIZ3F2EIP", "uuid": "e91998a8-574b-401f-9c1d-05856c68df29", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 303586836, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "cedd5164-0b21-4644-b8e2-54ebd338d5f8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6014433, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZ3F2EIP/fastqc_report.html", "@id": "/quality-metrics-fastqc/cedd5164-0b21-4644-b8e2-54ebd338d5f8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKWIR6EC/@@download/4DNFIKWIR6EC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2c99e9ce-ec4d-40f2-8e76-cf5c7951fbd5/4DNFIKWIR6EC.fastq.gz", "@id": "/files-fastq/4DNFIKWIR6EC/", "display_title": "4DNFIKWIR6EC.fastq.gz", "md5sum": "9fb721244b7cfd338b2c298c43140308", "file_classification": "raw file", "upload_key": "2c99e9ce-ec4d-40f2-8e76-cf5c7951fbd5/4DNFIKWIR6EC.fastq.gz", "accession": "4DNFIKWIR6EC", "uuid": "2c99e9ce-ec4d-40f2-8e76-cf5c7951fbd5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 280931797, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9d6ea7eb-8068-45ff-9b77-9856ca241973", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5610256, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKWIR6EC/fastqc_report.html", "@id": "/quality-metrics-fastqc/9d6ea7eb-8068-45ff-9b77-9856ca241973/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISBD4G1M/@@download/4DNFISBD4G1M.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e21382d8-642a-474e-b9c5-00240c96bb08/4DNFISBD4G1M.fastq.gz", "@id": "/files-fastq/4DNFISBD4G1M/", "display_title": "4DNFISBD4G1M.fastq.gz", "md5sum": "6c0e96fcff1600009096c06193cf8ea7", "file_classification": "raw file", "upload_key": "e21382d8-642a-474e-b9c5-00240c96bb08/4DNFISBD4G1M.fastq.gz", "accession": "4DNFISBD4G1M", "uuid": "e21382d8-642a-474e-b9c5-00240c96bb08", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 209556739, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "93a68c3c-cddd-4cff-ad03-465baca5d482", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4169683, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISBD4G1M/fastqc_report.html", "@id": "/quality-metrics-fastqc/93a68c3c-cddd-4cff-ad03-465baca5d482/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILTWFXEB/@@download/4DNFILTWFXEB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/af093a87-611b-46d3-b2a4-423539069623/4DNFILTWFXEB.fastq.gz", "@id": "/files-fastq/4DNFILTWFXEB/", "display_title": "4DNFILTWFXEB.fastq.gz", "md5sum": "a6c24e6a3f51d274ea8b9a1274964f85", "file_classification": "raw file", "upload_key": "af093a87-611b-46d3-b2a4-423539069623/4DNFILTWFXEB.fastq.gz", "accession": "4DNFILTWFXEB", "uuid": "af093a87-611b-46d3-b2a4-423539069623", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232401462, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "41ec781b-177a-4d1b-966c-e0c577b7ef59", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4646228, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILTWFXEB/fastqc_report.html", "@id": "/quality-metrics-fastqc/41ec781b-177a-4d1b-966c-e0c577b7ef59/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3N41L5R/@@download/4DNFI3N41L5R.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/8735306a-80ca-4b94-80e2-5b5bbf91f54b/4DNFI3N41L5R.fastq.gz", "@id": "/files-fastq/4DNFI3N41L5R/", "display_title": "4DNFI3N41L5R.fastq.gz", "md5sum": "1533a149d4b7c8dcf3d0fbfe03b34fbc", "file_classification": "raw file", "upload_key": "8735306a-80ca-4b94-80e2-5b5bbf91f54b/4DNFI3N41L5R.fastq.gz", "accession": "4DNFI3N41L5R", "uuid": "8735306a-80ca-4b94-80e2-5b5bbf91f54b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 313407067, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "23e4a2f1-124c-4aec-b2d7-dbff671275ac", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6325007, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3N41L5R/fastqc_report.html", "@id": "/quality-metrics-fastqc/23e4a2f1-124c-4aec-b2d7-dbff671275ac/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITKYTB8H/@@download/4DNFITKYTB8H.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/af43152f-3c7b-442c-8094-98b4e2b4d1d6/4DNFITKYTB8H.fastq.gz", "@id": "/files-fastq/4DNFITKYTB8H/", "display_title": "4DNFITKYTB8H.fastq.gz", "md5sum": "98e1c80d0675863dc7367eef2b3dfc88", "file_classification": "raw file", "upload_key": "af43152f-3c7b-442c-8094-98b4e2b4d1d6/4DNFITKYTB8H.fastq.gz", "accession": "4DNFITKYTB8H", "uuid": "af43152f-3c7b-442c-8094-98b4e2b4d1d6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 259810244, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "87d1c9b5-66c4-4050-b9d7-7a667476a61b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5191558, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITKYTB8H/fastqc_report.html", "@id": "/quality-metrics-fastqc/87d1c9b5-66c4-4050-b9d7-7a667476a61b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIKAT5RFG/@@download/4DNFIKAT5RFG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c242853a-5865-43e4-9eb8-89293679c901/4DNFIKAT5RFG.fastq.gz", "@id": "/files-fastq/4DNFIKAT5RFG/", "display_title": "4DNFIKAT5RFG.fastq.gz", "md5sum": "a117c52daefc6bae09b70d0a4674aae5", "file_classification": "raw file", "upload_key": "c242853a-5865-43e4-9eb8-89293679c901/4DNFIKAT5RFG.fastq.gz", "accession": "4DNFIKAT5RFG", "uuid": "c242853a-5865-43e4-9eb8-89293679c901", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230178420, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b8ce51e8-bed4-427a-ad84-1f8533ab7295", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4631437, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKAT5RFG/fastqc_report.html", "@id": "/quality-metrics-fastqc/b8ce51e8-bed4-427a-ad84-1f8533ab7295/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJH2436L/@@download/4DNFIJH2436L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/95210490-2686-4e42-80fa-2551f6268846/4DNFIJH2436L.fastq.gz", "@id": "/files-fastq/4DNFIJH2436L/", "display_title": "4DNFIJH2436L.fastq.gz", "md5sum": "423f38a2c7b2f2b8d62b94064fa10328", "file_classification": "raw file", "upload_key": "95210490-2686-4e42-80fa-2551f6268846/4DNFIJH2436L.fastq.gz", "accession": "4DNFIJH2436L", "uuid": "95210490-2686-4e42-80fa-2551f6268846", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264811094, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fe72469d-fd33-449e-b4e0-9bb6b3fbe520", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5297550, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJH2436L/fastqc_report.html", "@id": "/quality-metrics-fastqc/fe72469d-fd33-449e-b4e0-9bb6b3fbe520/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIW8QTJ65/@@download/4DNFIW8QTJ65.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/18c4387c-6334-4a12-bb80-bbd8e9b487be/4DNFIW8QTJ65.fastq.gz", "@id": "/files-fastq/4DNFIW8QTJ65/", "display_title": "4DNFIW8QTJ65.fastq.gz", "md5sum": "634d2f9a190f0b13beb4798b055cd3b7", "file_classification": "raw file", "upload_key": "18c4387c-6334-4a12-bb80-bbd8e9b487be/4DNFIW8QTJ65.fastq.gz", "accession": "4DNFIW8QTJ65", "uuid": "18c4387c-6334-4a12-bb80-bbd8e9b487be", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 288177926, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "46224c8e-ceb0-429b-8eda-d6a3c69c9707", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5725711, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW8QTJ65/fastqc_report.html", "@id": "/quality-metrics-fastqc/46224c8e-ceb0-429b-8eda-d6a3c69c9707/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGTFG1YK/@@download/4DNFIGTFG1YK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c58f44b2-8f1f-469c-b2a3-9e33afcefaaf/4DNFIGTFG1YK.fastq.gz", "@id": "/files-fastq/4DNFIGTFG1YK/", "display_title": "4DNFIGTFG1YK.fastq.gz", "md5sum": "8811facd8c45e93bf7d0092e12778d6a", "file_classification": "raw file", "upload_key": "c58f44b2-8f1f-469c-b2a3-9e33afcefaaf/4DNFIGTFG1YK.fastq.gz", "accession": "4DNFIGTFG1YK", "uuid": "c58f44b2-8f1f-469c-b2a3-9e33afcefaaf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 260247761, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "25d205d4-15c0-446e-99e8-8c77f912623a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5123847, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGTFG1YK/fastqc_report.html", "@id": "/quality-metrics-fastqc/25d205d4-15c0-446e-99e8-8c77f912623a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIRY3V89T/@@download/4DNFIRY3V89T.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/09d79338-20d4-46f9-9ee9-7f3b5a8d12ca/4DNFIRY3V89T.fastq.gz", "@id": "/files-fastq/4DNFIRY3V89T/", "display_title": "4DNFIRY3V89T.fastq.gz", "md5sum": "c482da10e5e84999b25d2d1516b29aff", "file_classification": "raw file", "upload_key": "09d79338-20d4-46f9-9ee9-7f3b5a8d12ca/4DNFIRY3V89T.fastq.gz", "accession": "4DNFIRY3V89T", "uuid": "09d79338-20d4-46f9-9ee9-7f3b5a8d12ca", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 277133730, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "465320c2-ceb0-452f-8bb7-aacbff4a3b0e", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5572455, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRY3V89T/fastqc_report.html", "@id": "/quality-metrics-fastqc/465320c2-ceb0-452f-8bb7-aacbff4a3b0e/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3GKAAEV/@@download/4DNFI3GKAAEV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/15e2abc2-ce26-433b-96c0-7adb06f7413f/4DNFI3GKAAEV.fastq.gz", "@id": "/files-fastq/4DNFI3GKAAEV/", "display_title": "4DNFI3GKAAEV.fastq.gz", "md5sum": "aa0f75ba0d874834315d52e208e3e81a", "file_classification": "raw file", "upload_key": "15e2abc2-ce26-433b-96c0-7adb06f7413f/4DNFI3GKAAEV.fastq.gz", "accession": "4DNFI3GKAAEV", "uuid": "15e2abc2-ce26-433b-96c0-7adb06f7413f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 285047231, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e73250a0-c682-491e-b2fb-a9734a9832a7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5605569, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3GKAAEV/fastqc_report.html", "@id": "/quality-metrics-fastqc/e73250a0-c682-491e-b2fb-a9734a9832a7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIEDF561X/@@download/4DNFIEDF561X.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/66eef1e1-e2fa-4c46-849b-aa69ae54a754/4DNFIEDF561X.fastq.gz", "@id": "/files-fastq/4DNFIEDF561X/", "display_title": "4DNFIEDF561X.fastq.gz", "md5sum": "054c9ee6a20fd25fad2459b256f92309", "file_classification": "raw file", "upload_key": "66eef1e1-e2fa-4c46-849b-aa69ae54a754/4DNFIEDF561X.fastq.gz", "accession": "4DNFIEDF561X", "uuid": "66eef1e1-e2fa-4c46-849b-aa69ae54a754", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 269042935, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "79b871f8-6c73-48ea-99c3-491b997cf632", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5300277, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEDF561X/fastqc_report.html", "@id": "/quality-metrics-fastqc/79b871f8-6c73-48ea-99c3-491b997cf632/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJM67K4G/@@download/4DNFIJM67K4G.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4e67176e-961e-47c1-9efa-fbc4ea9e8fdf/4DNFIJM67K4G.fastq.gz", "@id": "/files-fastq/4DNFIJM67K4G/", "display_title": "4DNFIJM67K4G.fastq.gz", "md5sum": "ed4fee380d8f948bd91711db2edccedf", "file_classification": "raw file", "upload_key": "4e67176e-961e-47c1-9efa-fbc4ea9e8fdf/4DNFIJM67K4G.fastq.gz", "accession": "4DNFIJM67K4G", "uuid": "4e67176e-961e-47c1-9efa-fbc4ea9e8fdf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 60514681, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "50c8d75f-4400-4e09-a069-7dc45bf59c7b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1663826, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJM67K4G/fastqc_report.html", "@id": "/quality-metrics-fastqc/50c8d75f-4400-4e09-a069-7dc45bf59c7b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI8334HO9/@@download/4DNFI8334HO9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b754ee18-22cc-40b7-8de0-f9feabd9f8c6/4DNFI8334HO9.fastq.gz", "@id": "/files-fastq/4DNFI8334HO9/", "display_title": "4DNFI8334HO9.fastq.gz", "md5sum": "5e224d5d90d3da10117ee17d33ecadb1", "file_classification": "raw file", "upload_key": "b754ee18-22cc-40b7-8de0-f9feabd9f8c6/4DNFI8334HO9.fastq.gz", "accession": "4DNFI8334HO9", "uuid": "b754ee18-22cc-40b7-8de0-f9feabd9f8c6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230002392, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c9bbce76-2578-4c13-9492-55cec2236b63", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4665362, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8334HO9/fastqc_report.html", "@id": "/quality-metrics-fastqc/c9bbce76-2578-4c13-9492-55cec2236b63/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFPRZPVB/@@download/4DNFIFPRZPVB.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f3e54f87-1040-41ff-b30b-dfeadc37d4fa/4DNFIFPRZPVB.fastq.gz", "@id": "/files-fastq/4DNFIFPRZPVB/", "display_title": "4DNFIFPRZPVB.fastq.gz", "md5sum": "2f446654dcdf847f315b72aa38f25f8a", "file_classification": "raw file", "upload_key": "f3e54f87-1040-41ff-b30b-dfeadc37d4fa/4DNFIFPRZPVB.fastq.gz", "accession": "4DNFIFPRZPVB", "uuid": "f3e54f87-1040-41ff-b30b-dfeadc37d4fa", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264321593, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e074dfd7-1088-405a-81b3-9ebe6f4fa1a1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5366546, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFPRZPVB/fastqc_report.html", "@id": "/quality-metrics-fastqc/e074dfd7-1088-405a-81b3-9ebe6f4fa1a1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3O9EMX9/@@download/4DNFI3O9EMX9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d7255719-026a-42ab-9917-997e7991c848/4DNFI3O9EMX9.fastq.gz", "@id": "/files-fastq/4DNFI3O9EMX9/", "display_title": "4DNFI3O9EMX9.fastq.gz", "md5sum": "c719a5c552eb51adc8698cd3b5483689", "file_classification": "raw file", "upload_key": "d7255719-026a-42ab-9917-997e7991c848/4DNFI3O9EMX9.fastq.gz", "accession": "4DNFI3O9EMX9", "uuid": "d7255719-026a-42ab-9917-997e7991c848", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 237059705, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ed77b7ba-d998-4282-a46e-78808aa27570", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4727406, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3O9EMX9/fastqc_report.html", "@id": "/quality-metrics-fastqc/ed77b7ba-d998-4282-a46e-78808aa27570/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1ERU6ET/@@download/4DNFI1ERU6ET.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/571fb620-2ceb-4c35-a359-6d8b802cf537/4DNFI1ERU6ET.fastq.gz", "@id": "/files-fastq/4DNFI1ERU6ET/", "display_title": "4DNFI1ERU6ET.fastq.gz", "md5sum": "b789d20c8e03add5247f40083edf76cd", "file_classification": "raw file", "upload_key": "571fb620-2ceb-4c35-a359-6d8b802cf537/4DNFI1ERU6ET.fastq.gz", "accession": "4DNFI1ERU6ET", "uuid": "571fb620-2ceb-4c35-a359-6d8b802cf537", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 210959788, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ec18cc3b-a418-453d-a761-bc4d1f478ca6", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4072169, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1ERU6ET/fastqc_report.html", "@id": "/quality-metrics-fastqc/ec18cc3b-a418-453d-a761-bc4d1f478ca6/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI7SAPALW/@@download/4DNFI7SAPALW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b38fd67f-31ef-49e2-918f-831d88f9c8c6/4DNFI7SAPALW.fastq.gz", "@id": "/files-fastq/4DNFI7SAPALW/", "display_title": "4DNFI7SAPALW.fastq.gz", "md5sum": "a5ba169b3afb52bc3b8448caaf57cdc6", "file_classification": "raw file", "upload_key": "b38fd67f-31ef-49e2-918f-831d88f9c8c6/4DNFI7SAPALW.fastq.gz", "accession": "4DNFI7SAPALW", "uuid": "b38fd67f-31ef-49e2-918f-831d88f9c8c6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 259096549, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dc229155-9347-4526-97ba-a56dd3033f1b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5145267, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI7SAPALW/fastqc_report.html", "@id": "/quality-metrics-fastqc/dc229155-9347-4526-97ba-a56dd3033f1b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIA59D7ZR/@@download/4DNFIA59D7ZR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0c8a15ca-4b99-48c2-8c98-cb4bfaf050b6/4DNFIA59D7ZR.fastq.gz", "@id": "/files-fastq/4DNFIA59D7ZR/", "display_title": "4DNFIA59D7ZR.fastq.gz", "md5sum": "e36645e326e9e6746760c64c517b824e", "file_classification": "raw file", "upload_key": "0c8a15ca-4b99-48c2-8c98-cb4bfaf050b6/4DNFIA59D7ZR.fastq.gz", "accession": "4DNFIA59D7ZR", "uuid": "0c8a15ca-4b99-48c2-8c98-cb4bfaf050b6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 250151269, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "991a0283-8179-42b7-8bc5-2c0e5710ffdf", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4935167, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA59D7ZR/fastqc_report.html", "@id": "/quality-metrics-fastqc/991a0283-8179-42b7-8bc5-2c0e5710ffdf/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIEHAKFWJ/@@download/4DNFIEHAKFWJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/aa823100-f3ec-4f59-a054-40608c5239c0/4DNFIEHAKFWJ.fastq.gz", "@id": "/files-fastq/4DNFIEHAKFWJ/", "display_title": "4DNFIEHAKFWJ.fastq.gz", "md5sum": "cd7b43e4a2ba200aed6cd6fcd8a59edd", "file_classification": "raw file", "upload_key": "aa823100-f3ec-4f59-a054-40608c5239c0/4DNFIEHAKFWJ.fastq.gz", "accession": "4DNFIEHAKFWJ", "uuid": "aa823100-f3ec-4f59-a054-40608c5239c0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 279602387, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "667060da-d4e3-4fbe-ab6e-141e56f7baf5", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5581983, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEHAKFWJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/667060da-d4e3-4fbe-ab6e-141e56f7baf5/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIX1DB5F3/@@download/4DNFIX1DB5F3.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/56538ed5-65f1-456c-8a5f-a885a518a11d/4DNFIX1DB5F3.fastq.gz", "@id": "/files-fastq/4DNFIX1DB5F3/", "display_title": "4DNFIX1DB5F3.fastq.gz", "md5sum": "1dde58d0b3c542649ff54faa0abc75eb", "file_classification": "raw file", "upload_key": "56538ed5-65f1-456c-8a5f-a885a518a11d/4DNFIX1DB5F3.fastq.gz", "accession": "4DNFIX1DB5F3", "uuid": "56538ed5-65f1-456c-8a5f-a885a518a11d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 228052141, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "6fe51c14-f67c-49e1-ac38-21354420896c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4457885, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIX1DB5F3/fastqc_report.html", "@id": "/quality-metrics-fastqc/6fe51c14-f67c-49e1-ac38-21354420896c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIT12LQ2R/@@download/4DNFIT12LQ2R.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/53e98357-bd02-44e2-aa7a-05b594b39c13/4DNFIT12LQ2R.fastq.gz", "@id": "/files-fastq/4DNFIT12LQ2R/", "display_title": "4DNFIT12LQ2R.fastq.gz", "md5sum": "977f59667f238c9306ff922ad2ca5393", "file_classification": "raw file", "upload_key": "53e98357-bd02-44e2-aa7a-05b594b39c13/4DNFIT12LQ2R.fastq.gz", "accession": "4DNFIT12LQ2R", "uuid": "53e98357-bd02-44e2-aa7a-05b594b39c13", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 303120316, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "366f98de-4a57-4560-83f1-1d58345c92b1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6022530, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT12LQ2R/fastqc_report.html", "@id": "/quality-metrics-fastqc/366f98de-4a57-4560-83f1-1d58345c92b1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITERRW8L/@@download/4DNFITERRW8L.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6e26079f-fb68-4adc-98a9-8af08e6ab858/4DNFITERRW8L.fastq.gz", "@id": "/files-fastq/4DNFITERRW8L/", "display_title": "4DNFITERRW8L.fastq.gz", "md5sum": "c74168d7ee636737ce7d7090f681fadc", "file_classification": "raw file", "upload_key": "6e26079f-fb68-4adc-98a9-8af08e6ab858/4DNFITERRW8L.fastq.gz", "accession": "4DNFITERRW8L", "uuid": "6e26079f-fb68-4adc-98a9-8af08e6ab858", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 253984506, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7c26fce6-5d4d-4bc7-a5a8-03ac2c87e723", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5040243, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITERRW8L/fastqc_report.html", "@id": "/quality-metrics-fastqc/7c26fce6-5d4d-4bc7-a5a8-03ac2c87e723/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIFJ6ICO9/@@download/4DNFIFJ6ICO9.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a44cc0eb-3909-4e55-91f3-87bb14f2a5cc/4DNFIFJ6ICO9.fastq.gz", "@id": "/files-fastq/4DNFIFJ6ICO9/", "display_title": "4DNFIFJ6ICO9.fastq.gz", "md5sum": "ccd8e063554e771b281e2e4db2d90b29", "file_classification": "raw file", "upload_key": "a44cc0eb-3909-4e55-91f3-87bb14f2a5cc/4DNFIFJ6ICO9.fastq.gz", "accession": "4DNFIFJ6ICO9", "uuid": "a44cc0eb-3909-4e55-91f3-87bb14f2a5cc", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 260517611, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "385bf5cb-8375-44d4-a04f-6e3ccae09419", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5178995, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFJ6ICO9/fastqc_report.html", "@id": "/quality-metrics-fastqc/385bf5cb-8375-44d4-a04f-6e3ccae09419/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPVQKWTO/@@download/4DNFIPVQKWTO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/660db6d6-3cf0-4382-bc66-c3931b3e4e52/4DNFIPVQKWTO.fastq.gz", "@id": "/files-fastq/4DNFIPVQKWTO/", "display_title": "4DNFIPVQKWTO.fastq.gz", "md5sum": "b89b43a673acc98db9ec0660d6618a09", "file_classification": "raw file", "upload_key": "660db6d6-3cf0-4382-bc66-c3931b3e4e52/4DNFIPVQKWTO.fastq.gz", "accession": "4DNFIPVQKWTO", "uuid": "660db6d6-3cf0-4382-bc66-c3931b3e4e52", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 105649057, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2e2453f6-eac0-46a2-84b3-0423b2ed4f0c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2941494, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPVQKWTO/fastqc_report.html", "@id": "/quality-metrics-fastqc/2e2453f6-eac0-46a2-84b3-0423b2ed4f0c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIR81GZL/@@download/4DNFIIR81GZL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/cfd0cee9-94f0-4afe-86bf-4a0b9715f63e/4DNFIIR81GZL.fastq.gz", "@id": "/files-fastq/4DNFIIR81GZL/", "display_title": "4DNFIIR81GZL.fastq.gz", "md5sum": "e7e83504caca4b667a482b2be1020ea0", "file_classification": "raw file", "upload_key": "cfd0cee9-94f0-4afe-86bf-4a0b9715f63e/4DNFIIR81GZL.fastq.gz", "accession": "4DNFIIR81GZL", "uuid": "cfd0cee9-94f0-4afe-86bf-4a0b9715f63e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264986016, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8a3f5005-7002-481d-9734-9c46bd7993e9", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5385559, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIR81GZL/fastqc_report.html", "@id": "/quality-metrics-fastqc/8a3f5005-7002-481d-9734-9c46bd7993e9/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYUAGSDU/@@download/4DNFIYUAGSDU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b3c2e1c1-5f6f-43eb-8f00-c984a90363a5/4DNFIYUAGSDU.fastq.gz", "@id": "/files-fastq/4DNFIYUAGSDU/", "display_title": "4DNFIYUAGSDU.fastq.gz", "md5sum": "4e93951e45e446314e5cf058a385578a", "file_classification": "raw file", "upload_key": "b3c2e1c1-5f6f-43eb-8f00-c984a90363a5/4DNFIYUAGSDU.fastq.gz", "accession": "4DNFIYUAGSDU", "uuid": "b3c2e1c1-5f6f-43eb-8f00-c984a90363a5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 272839842, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8fe62cb1-0a60-45d7-89a2-4a5599374419", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5513989, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYUAGSDU/fastqc_report.html", "@id": "/quality-metrics-fastqc/8fe62cb1-0a60-45d7-89a2-4a5599374419/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIYOVWJXM/@@download/4DNFIYOVWJXM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/080f4e60-5d1a-417e-bfd2-1a714b122b11/4DNFIYOVWJXM.fastq.gz", "@id": "/files-fastq/4DNFIYOVWJXM/", "display_title": "4DNFIYOVWJXM.fastq.gz", "md5sum": "34d2ce564183638eaa44ecef7de71dad", "file_classification": "raw file", "upload_key": "080f4e60-5d1a-417e-bfd2-1a714b122b11/4DNFIYOVWJXM.fastq.gz", "accession": "4DNFIYOVWJXM", "uuid": "080f4e60-5d1a-417e-bfd2-1a714b122b11", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 279609980, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0c199e9e-4ef8-47ea-ae52-e0e5ebe7c197", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5608492, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYOVWJXM/fastqc_report.html", "@id": "/quality-metrics-fastqc/0c199e9e-4ef8-47ea-ae52-e0e5ebe7c197/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1GFBGTQ/@@download/4DNFI1GFBGTQ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d8935bbc-c21e-4d6b-83d7-04cc6d125faf/4DNFI1GFBGTQ.fastq.gz", "@id": "/files-fastq/4DNFI1GFBGTQ/", "display_title": "4DNFI1GFBGTQ.fastq.gz", "md5sum": "d6b15dd516a8faef3e2f27d51c460cff", "file_classification": "raw file", "upload_key": "d8935bbc-c21e-4d6b-83d7-04cc6d125faf/4DNFI1GFBGTQ.fastq.gz", "accession": "4DNFI1GFBGTQ", "uuid": "d8935bbc-c21e-4d6b-83d7-04cc6d125faf", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 288173927, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "73049d52-59a1-43f3-b4dd-5f1602b02f8a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5839211, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1GFBGTQ/fastqc_report.html", "@id": "/quality-metrics-fastqc/73049d52-59a1-43f3-b4dd-5f1602b02f8a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBRJ94F1/@@download/4DNFIBRJ94F1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/08bfc10d-7802-4c40-8f71-451aa0ae207b/4DNFIBRJ94F1.fastq.gz", "@id": "/files-fastq/4DNFIBRJ94F1/", "display_title": "4DNFIBRJ94F1.fastq.gz", "md5sum": "affb8336667791c74363e1b14ecb0e9b", "file_classification": "raw file", "upload_key": "08bfc10d-7802-4c40-8f71-451aa0ae207b/4DNFIBRJ94F1.fastq.gz", "accession": "4DNFIBRJ94F1", "uuid": "08bfc10d-7802-4c40-8f71-451aa0ae207b", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264560858, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e6d82882-bba6-4633-bf80-3657a1ec6359", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5363759, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBRJ94F1/fastqc_report.html", "@id": "/quality-metrics-fastqc/e6d82882-bba6-4633-bf80-3657a1ec6359/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI8DCWWE2/@@download/4DNFI8DCWWE2.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/128000b1-2476-4479-953b-53c65b105bae/4DNFI8DCWWE2.fastq.gz", "@id": "/files-fastq/4DNFI8DCWWE2/", "display_title": "4DNFI8DCWWE2.fastq.gz", "md5sum": "c6cec04cb88b6e6085587f2368de4104", "file_classification": "raw file", "upload_key": "128000b1-2476-4479-953b-53c65b105bae/4DNFI8DCWWE2.fastq.gz", "accession": "4DNFI8DCWWE2", "uuid": "128000b1-2476-4479-953b-53c65b105bae", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 247858144, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "18471a14-6f9d-4701-8c14-db8f27b8caf7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4988635, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8DCWWE2/fastqc_report.html", "@id": "/quality-metrics-fastqc/18471a14-6f9d-4701-8c14-db8f27b8caf7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQUPHEJY/@@download/4DNFIQUPHEJY.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d7eefa9e-78cc-4ecd-92bd-5769d0635e18/4DNFIQUPHEJY.fastq.gz", "@id": "/files-fastq/4DNFIQUPHEJY/", "display_title": "4DNFIQUPHEJY.fastq.gz", "md5sum": "8e8e148cbabf7c637ad77ccdb5fddf46", "file_classification": "raw file", "upload_key": "d7eefa9e-78cc-4ecd-92bd-5769d0635e18/4DNFIQUPHEJY.fastq.gz", "accession": "4DNFIQUPHEJY", "uuid": "d7eefa9e-78cc-4ecd-92bd-5769d0635e18", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 264139661, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1af17a69-11bd-4b1f-86e7-2c335e6afbbc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5310488, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQUPHEJY/fastqc_report.html", "@id": "/quality-metrics-fastqc/1af17a69-11bd-4b1f-86e7-2c335e6afbbc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1SZYKIR/@@download/4DNFI1SZYKIR.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/32bd0241-01d3-4075-ad60-24c1977ab8a3/4DNFI1SZYKIR.fastq.gz", "@id": "/files-fastq/4DNFI1SZYKIR/", "display_title": "4DNFI1SZYKIR.fastq.gz", "md5sum": "a1e8979741e9710b3779dee39c233e28", "file_classification": "raw file", "upload_key": "32bd0241-01d3-4075-ad60-24c1977ab8a3/4DNFI1SZYKIR.fastq.gz", "accession": "4DNFI1SZYKIR", "uuid": "32bd0241-01d3-4075-ad60-24c1977ab8a3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 259306675, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "fe69cce3-cfb7-4e14-a742-773d95d4e2f8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5119482, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1SZYKIR/fastqc_report.html", "@id": "/quality-metrics-fastqc/fe69cce3-cfb7-4e14-a742-773d95d4e2f8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOS33Z8B/@@download/4DNFIOS33Z8B.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/baeab5d3-cdf8-4140-b890-542bf9847a2f/4DNFIOS33Z8B.fastq.gz", "@id": "/files-fastq/4DNFIOS33Z8B/", "display_title": "4DNFIOS33Z8B.fastq.gz", "md5sum": "b61b5993579862283342787dd20a5795", "file_classification": "raw file", "upload_key": "baeab5d3-cdf8-4140-b890-542bf9847a2f/4DNFIOS33Z8B.fastq.gz", "accession": "4DNFIOS33Z8B", "uuid": "baeab5d3-cdf8-4140-b890-542bf9847a2f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 263106111, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "1b0c5733-0e2f-4b86-a23a-6e5c1e29745f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5257696, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOS33Z8B/fastqc_report.html", "@id": "/quality-metrics-fastqc/1b0c5733-0e2f-4b86-a23a-6e5c1e29745f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMD8WQTM/@@download/4DNFIMD8WQTM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f7133b4f-e566-4525-a910-1c5bf6f2d30e/4DNFIMD8WQTM.fastq.gz", "@id": "/files-fastq/4DNFIMD8WQTM/", "display_title": "4DNFIMD8WQTM.fastq.gz", "md5sum": "853dbf8e5a58263e0adc06b5879d83b9", "file_classification": "raw file", "upload_key": "f7133b4f-e566-4525-a910-1c5bf6f2d30e/4DNFIMD8WQTM.fastq.gz", "accession": "4DNFIMD8WQTM", "uuid": "f7133b4f-e566-4525-a910-1c5bf6f2d30e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 278180838, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2de16319-49cb-464e-8178-5fb656e16696", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5530599, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMD8WQTM/fastqc_report.html", "@id": "/quality-metrics-fastqc/2de16319-49cb-464e-8178-5fb656e16696/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIK62Z3B8/@@download/4DNFIK62Z3B8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/edaf34fe-610a-4277-9226-45e25608ab16/4DNFIK62Z3B8.fastq.gz", "@id": "/files-fastq/4DNFIK62Z3B8/", "display_title": "4DNFIK62Z3B8.fastq.gz", "md5sum": "107434af5c7b69dc040108e4f4b29bf9", "file_classification": "raw file", "upload_key": "edaf34fe-610a-4277-9226-45e25608ab16/4DNFIK62Z3B8.fastq.gz", "accession": "4DNFIK62Z3B8", "uuid": "edaf34fe-610a-4277-9226-45e25608ab16", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 262864850, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4aa5a26b-d3ff-4d94-bd15-b95968e9b66d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5242422, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK62Z3B8/fastqc_report.html", "@id": "/quality-metrics-fastqc/4aa5a26b-d3ff-4d94-bd15-b95968e9b66d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5K47I9B/@@download/4DNFI5K47I9B.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/58c47720-ea85-470a-9b7c-8ff22562bbc6/4DNFI5K47I9B.fastq.gz", "@id": "/files-fastq/4DNFI5K47I9B/", "display_title": "4DNFI5K47I9B.fastq.gz", "md5sum": "1cf50c011d283842f064deff813c2666", "file_classification": "raw file", "upload_key": "58c47720-ea85-470a-9b7c-8ff22562bbc6/4DNFI5K47I9B.fastq.gz", "accession": "4DNFI5K47I9B", "uuid": "58c47720-ea85-470a-9b7c-8ff22562bbc6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 253633210, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8ae072c6-ace9-4ca3-a96c-5f9b8989fa31", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5068084, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5K47I9B/fastqc_report.html", "@id": "/quality-metrics-fastqc/8ae072c6-ace9-4ca3-a96c-5f9b8989fa31/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9WAHI28/@@download/4DNFI9WAHI28.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/96ba60e5-5e4d-482a-997f-4a4edd71b4ce/4DNFI9WAHI28.fastq.gz", "@id": "/files-fastq/4DNFI9WAHI28/", "display_title": "4DNFI9WAHI28.fastq.gz", "md5sum": "92431b2585831669d063cadce6d0129e", "file_classification": "raw file", "upload_key": "96ba60e5-5e4d-482a-997f-4a4edd71b4ce/4DNFI9WAHI28.fastq.gz", "accession": "4DNFI9WAHI28", "uuid": "96ba60e5-5e4d-482a-997f-4a4edd71b4ce", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 198731765, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "87a5aa2e-e658-42eb-bd1f-77752dfe7eb1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3952305, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9WAHI28/fastqc_report.html", "@id": "/quality-metrics-fastqc/87a5aa2e-e658-42eb-bd1f-77752dfe7eb1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1V4K22J/@@download/4DNFI1V4K22J.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/567068c8-aa89-45e7-a7a0-8950c00c30dd/4DNFI1V4K22J.fastq.gz", "@id": "/files-fastq/4DNFI1V4K22J/", "display_title": "4DNFI1V4K22J.fastq.gz", "md5sum": "ddbbf00bc9f833292ab76d04ec64373c", "file_classification": "raw file", "upload_key": "567068c8-aa89-45e7-a7a0-8950c00c30dd/4DNFI1V4K22J.fastq.gz", "accession": "4DNFI1V4K22J", "uuid": "567068c8-aa89-45e7-a7a0-8950c00c30dd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 244051519, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0ce69ae2-a1b6-49e2-a788-8e415349e97d", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4876035, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1V4K22J/fastqc_report.html", "@id": "/quality-metrics-fastqc/0ce69ae2-a1b6-49e2-a788-8e415349e97d/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDBIWANH/@@download/4DNFIDBIWANH.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/968f48b7-4faf-4fe1-9241-c1d82f86305f/4DNFIDBIWANH.fastq.gz", "@id": "/files-fastq/4DNFIDBIWANH/", "display_title": "4DNFIDBIWANH.fastq.gz", "md5sum": "0571f384033790893015893e8db2ff05", "file_classification": "raw file", "upload_key": "968f48b7-4faf-4fe1-9241-c1d82f86305f/4DNFIDBIWANH.fastq.gz", "accession": "4DNFIDBIWANH", "uuid": "968f48b7-4faf-4fe1-9241-c1d82f86305f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 272990375, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3bafa61b-dab4-443a-aae5-77c9e86d7f3f", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5570023, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDBIWANH/fastqc_report.html", "@id": "/quality-metrics-fastqc/3bafa61b-dab4-443a-aae5-77c9e86d7f3f/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI9C4MOUI/@@download/4DNFI9C4MOUI.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0195930d-8ad9-4469-8d43-ea75b8a348f5/4DNFI9C4MOUI.fastq.gz", "@id": "/files-fastq/4DNFI9C4MOUI/", "display_title": "4DNFI9C4MOUI.fastq.gz", "md5sum": "d39cfb361f236c3beba712bb2ded3a1d", "file_classification": "raw file", "upload_key": "0195930d-8ad9-4469-8d43-ea75b8a348f5/4DNFI9C4MOUI.fastq.gz", "accession": "4DNFI9C4MOUI", "uuid": "0195930d-8ad9-4469-8d43-ea75b8a348f5", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 72084739, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2d93736b-5df5-410e-bc86-bfbe037f2b80", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1302287, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9C4MOUI/fastqc_report.html", "@id": "/quality-metrics-fastqc/2d93736b-5df5-410e-bc86-bfbe037f2b80/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIIW9V5VL/@@download/4DNFIIW9V5VL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/82622fbf-b458-4a2e-9e32-c4c573a5f1cd/4DNFIIW9V5VL.fastq.gz", "@id": "/files-fastq/4DNFIIW9V5VL/", "display_title": "4DNFIIW9V5VL.fastq.gz", "md5sum": "b8a11c81bce0d658ef918e8f64c8197a", "file_classification": "raw file", "upload_key": "82622fbf-b458-4a2e-9e32-c4c573a5f1cd/4DNFIIW9V5VL.fastq.gz", "accession": "4DNFIIW9V5VL", "uuid": "82622fbf-b458-4a2e-9e32-c4c573a5f1cd", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 232583022, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "249ba67b-a3e6-40ec-aedf-30f61eb281e8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4653393, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIW9V5VL/fastqc_report.html", "@id": "/quality-metrics-fastqc/249ba67b-a3e6-40ec-aedf-30f61eb281e8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGOSTXE6/@@download/4DNFIGOSTXE6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/ba1a2269-9eb5-45fc-b163-840dfe313589/4DNFIGOSTXE6.fastq.gz", "@id": "/files-fastq/4DNFIGOSTXE6/", "display_title": "4DNFIGOSTXE6.fastq.gz", "md5sum": "6df320dd1cf9981e9b5a09c4429eb0b6", "file_classification": "raw file", "upload_key": "ba1a2269-9eb5-45fc-b163-840dfe313589/4DNFIGOSTXE6.fastq.gz", "accession": "4DNFIGOSTXE6", "uuid": "ba1a2269-9eb5-45fc-b163-840dfe313589", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 267237914, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8e03ecd5-9d9c-4a4d-91c9-38b002fb679a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5386588, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGOSTXE6/fastqc_report.html", "@id": "/quality-metrics-fastqc/8e03ecd5-9d9c-4a4d-91c9-38b002fb679a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI98G869X/@@download/4DNFI98G869X.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/628a17a3-adc2-477a-b2a2-f33e935cad6a/4DNFI98G869X.fastq.gz", "@id": "/files-fastq/4DNFI98G869X/", "display_title": "4DNFI98G869X.fastq.gz", "md5sum": "57c5ca594ce2f86e22e95343e485c6c9", "file_classification": "raw file", "upload_key": "628a17a3-adc2-477a-b2a2-f33e935cad6a/4DNFI98G869X.fastq.gz", "accession": "4DNFI98G869X", "uuid": "628a17a3-adc2-477a-b2a2-f33e935cad6a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 282844488, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "ae639e05-9524-4fcc-bde2-1fda385c1993", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5707969, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI98G869X/fastqc_report.html", "@id": "/quality-metrics-fastqc/ae639e05-9524-4fcc-bde2-1fda385c1993/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISU5WSUX/@@download/4DNFISU5WSUX.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b30c4fe1-63e5-4c8a-8a67-3edc74996cd7/4DNFISU5WSUX.fastq.gz", "@id": "/files-fastq/4DNFISU5WSUX/", "display_title": "4DNFISU5WSUX.fastq.gz", "md5sum": "706481f2cb72e9fe8069f5adb59237c8", "file_classification": "raw file", "upload_key": "b30c4fe1-63e5-4c8a-8a67-3edc74996cd7/4DNFISU5WSUX.fastq.gz", "accession": "4DNFISU5WSUX", "uuid": "b30c4fe1-63e5-4c8a-8a67-3edc74996cd7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 228188090, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "24c5f4cd-b679-4d2e-adda-901cd4d2d68a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4580080, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISU5WSUX/fastqc_report.html", "@id": "/quality-metrics-fastqc/24c5f4cd-b679-4d2e-adda-901cd4d2d68a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZKBIAFS/@@download/4DNFIZKBIAFS.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/46250f93-d345-440f-bbe5-711f7feb313f/4DNFIZKBIAFS.fastq.gz", "@id": "/files-fastq/4DNFIZKBIAFS/", "display_title": "4DNFIZKBIAFS.fastq.gz", "md5sum": "b7c7e59efae40f613630cf27a79c3120", "file_classification": "raw file", "upload_key": "46250f93-d345-440f-bbe5-711f7feb313f/4DNFIZKBIAFS.fastq.gz", "accession": "4DNFIZKBIAFS", "uuid": "46250f93-d345-440f-bbe5-711f7feb313f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 287880759, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "70d59d2a-8670-46dc-a740-8c80970e10b0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5768293, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZKBIAFS/fastqc_report.html", "@id": "/quality-metrics-fastqc/70d59d2a-8670-46dc-a740-8c80970e10b0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBO89W1C/@@download/4DNFIBO89W1C.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b9a28c62-2da4-4429-af77-31981a756302/4DNFIBO89W1C.fastq.gz", "@id": "/files-fastq/4DNFIBO89W1C/", "display_title": "4DNFIBO89W1C.fastq.gz", "md5sum": "23c58ff1882ad4e1869feb05ccd7de32", "file_classification": "raw file", "upload_key": "b9a28c62-2da4-4429-af77-31981a756302/4DNFIBO89W1C.fastq.gz", "accession": "4DNFIBO89W1C", "uuid": "b9a28c62-2da4-4429-af77-31981a756302", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 288574837, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0b1fb22c-ddc9-4acc-a730-66c28102a8fe", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5785984, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBO89W1C/fastqc_report.html", "@id": "/quality-metrics-fastqc/0b1fb22c-ddc9-4acc-a730-66c28102a8fe/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI5RE91YF/@@download/4DNFI5RE91YF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b5bf0987-b14b-4760-8935-805e2ddb9c30/4DNFI5RE91YF.fastq.gz", "@id": "/files-fastq/4DNFI5RE91YF/", "display_title": "4DNFI5RE91YF.fastq.gz", "md5sum": "9f459a2f28fd99d6319ddf95d2d92326", "file_classification": "raw file", "upload_key": "b5bf0987-b14b-4760-8935-805e2ddb9c30/4DNFI5RE91YF.fastq.gz", "accession": "4DNFI5RE91YF", "uuid": "b5bf0987-b14b-4760-8935-805e2ddb9c30", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 304106005, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d18f5012-6b26-421d-8b2f-64cee2da1ce0", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5993909, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5RE91YF/fastqc_report.html", "@id": "/quality-metrics-fastqc/d18f5012-6b26-421d-8b2f-64cee2da1ce0/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIVMZUTYU/@@download/4DNFIVMZUTYU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/761f8d29-30cf-40b0-b064-3ef49e240d4f/4DNFIVMZUTYU.fastq.gz", "@id": "/files-fastq/4DNFIVMZUTYU/", "display_title": "4DNFIVMZUTYU.fastq.gz", "md5sum": "b9d6baa42ac30b4909b015f7282d9704", "file_classification": "raw file", "upload_key": "761f8d29-30cf-40b0-b064-3ef49e240d4f/4DNFIVMZUTYU.fastq.gz", "accession": "4DNFIVMZUTYU", "uuid": "761f8d29-30cf-40b0-b064-3ef49e240d4f", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 65631198, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7c488e9a-dacc-4929-878d-ce45179887fc", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1802901, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVMZUTYU/fastqc_report.html", "@id": "/quality-metrics-fastqc/7c488e9a-dacc-4929-878d-ce45179887fc/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISD11CZO/@@download/4DNFISD11CZO.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/9bf8d006-ba60-4391-bae5-bd2d1e89e489/4DNFISD11CZO.fastq.gz", "@id": "/files-fastq/4DNFISD11CZO/", "display_title": "4DNFISD11CZO.fastq.gz", "md5sum": "92ffb7be911d74a2bf989c43751d6400", "file_classification": "raw file", "upload_key": "9bf8d006-ba60-4391-bae5-bd2d1e89e489/4DNFISD11CZO.fastq.gz", "accession": "4DNFISD11CZO", "uuid": "9bf8d006-ba60-4391-bae5-bd2d1e89e489", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230075327, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "99821904-bd29-4d8c-9ee7-4970d676bf95", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4526726, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISD11CZO/fastqc_report.html", "@id": "/quality-metrics-fastqc/99821904-bd29-4d8c-9ee7-4970d676bf95/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBSS1RVU/@@download/4DNFIBSS1RVU.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7e0edd55-dbc2-4949-9510-cae982bf999a/4DNFIBSS1RVU.fastq.gz", "@id": "/files-fastq/4DNFIBSS1RVU/", "display_title": "4DNFIBSS1RVU.fastq.gz", "md5sum": "603d3cff61aaf3fe434ebb7e73a943cf", "file_classification": "raw file", "upload_key": "7e0edd55-dbc2-4949-9510-cae982bf999a/4DNFIBSS1RVU.fastq.gz", "accession": "4DNFIBSS1RVU", "uuid": "7e0edd55-dbc2-4949-9510-cae982bf999a", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 282356908, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "94b566e9-3adf-4e6f-b2b5-9c5d6c0d1bfa", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5694043, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBSS1RVU/fastqc_report.html", "@id": "/quality-metrics-fastqc/94b566e9-3adf-4e6f-b2b5-9c5d6c0d1bfa/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFILKLVGML/@@download/4DNFILKLVGML.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7f3c0194-1097-49d6-93dc-dac36cce0f30/4DNFILKLVGML.fastq.gz", "@id": "/files-fastq/4DNFILKLVGML/", "display_title": "4DNFILKLVGML.fastq.gz", "md5sum": "167a6b2e76022ad8eadfdbcd6c6e997f", "file_classification": "raw file", "upload_key": "7f3c0194-1097-49d6-93dc-dac36cce0f30/4DNFILKLVGML.fastq.gz", "accession": "4DNFILKLVGML", "uuid": "7f3c0194-1097-49d6-93dc-dac36cce0f30", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 278869403, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "8c590e70-a533-4152-8553-4b3e70918723", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5585257, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILKLVGML/fastqc_report.html", "@id": "/quality-metrics-fastqc/8c590e70-a533-4152-8553-4b3e70918723/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIDSZ6JT4/@@download/4DNFIDSZ6JT4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7ed0459b-1ce7-48ac-8be6-f838e9624e20/4DNFIDSZ6JT4.fastq.gz", "@id": "/files-fastq/4DNFIDSZ6JT4/", "display_title": "4DNFIDSZ6JT4.fastq.gz", "md5sum": "561642bd27327bf21cbe50392cfa6368", "file_classification": "raw file", "upload_key": "7ed0459b-1ce7-48ac-8be6-f838e9624e20/4DNFIDSZ6JT4.fastq.gz", "accession": "4DNFIDSZ6JT4", "uuid": "7ed0459b-1ce7-48ac-8be6-f838e9624e20", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 284706691, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "3020a37e-a3b6-402a-a28c-65315d8bb28c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5700210, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIDSZ6JT4/fastqc_report.html", "@id": "/quality-metrics-fastqc/3020a37e-a3b6-402a-a28c-65315d8bb28c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIA1V6GRG/@@download/4DNFIA1V6GRG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e4ab8d20-9997-4483-9a83-d8f5c640c2ab/4DNFIA1V6GRG.fastq.gz", "@id": "/files-fastq/4DNFIA1V6GRG/", "display_title": "4DNFIA1V6GRG.fastq.gz", "md5sum": "16f28ddabaecd04e08a48633e412a624", "file_classification": "raw file", "upload_key": "e4ab8d20-9997-4483-9a83-d8f5c640c2ab/4DNFIA1V6GRG.fastq.gz", "accession": "4DNFIA1V6GRG", "uuid": "e4ab8d20-9997-4483-9a83-d8f5c640c2ab", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 318810389, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "73e6df39-f9e3-44be-a8e7-1a5dec0f01ce", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6433228, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA1V6GRG/fastqc_report.html", "@id": "/quality-metrics-fastqc/73e6df39-f9e3-44be-a8e7-1a5dec0f01ce/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6WENV1N/@@download/4DNFI6WENV1N.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f73e1b7e-1a9f-4887-998c-46c8d13e3959/4DNFI6WENV1N.fastq.gz", "@id": "/files-fastq/4DNFI6WENV1N/", "display_title": "4DNFI6WENV1N.fastq.gz", "md5sum": "67d067f9a99cd9a1049f0b244a451576", "file_classification": "raw file", "upload_key": "f73e1b7e-1a9f-4887-998c-46c8d13e3959/4DNFI6WENV1N.fastq.gz", "accession": "4DNFI6WENV1N", "uuid": "f73e1b7e-1a9f-4887-998c-46c8d13e3959", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 253008267, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "755a3b5e-922d-4096-b4f0-fdf881e0a384", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5040595, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6WENV1N/fastqc_report.html", "@id": "/quality-metrics-fastqc/755a3b5e-922d-4096-b4f0-fdf881e0a384/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIGTU7783/@@download/4DNFIGTU7783.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e73093ef-6f8d-4acb-9b67-a72654d5ddf0/4DNFIGTU7783.fastq.gz", "@id": "/files-fastq/4DNFIGTU7783/", "display_title": "4DNFIGTU7783.fastq.gz", "md5sum": "a2dd61cfc661e0ccda51065378cf2a27", "file_classification": "raw file", "upload_key": "e73093ef-6f8d-4acb-9b67-a72654d5ddf0/4DNFIGTU7783.fastq.gz", "accession": "4DNFIGTU7783", "uuid": "e73093ef-6f8d-4acb-9b67-a72654d5ddf0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 258675347, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "475b5d73-4069-4bad-a6dd-8ecddafc40a7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5220134, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIGTU7783/fastqc_report.html", "@id": "/quality-metrics-fastqc/475b5d73-4069-4bad-a6dd-8ecddafc40a7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIQ8PGAJP/@@download/4DNFIQ8PGAJP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5eaf443d-30f9-4ecc-9981-0450608f76de/4DNFIQ8PGAJP.fastq.gz", "@id": "/files-fastq/4DNFIQ8PGAJP/", "display_title": "4DNFIQ8PGAJP.fastq.gz", "md5sum": "dd3b765e5104b69dac213da31aff45e8", "file_classification": "raw file", "upload_key": "5eaf443d-30f9-4ecc-9981-0450608f76de/4DNFIQ8PGAJP.fastq.gz", "accession": "4DNFIQ8PGAJP", "uuid": "5eaf443d-30f9-4ecc-9981-0450608f76de", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 230081642, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "39d9a6fd-591e-431a-bae6-575462aeded7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4523354, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQ8PGAJP/fastqc_report.html", "@id": "/quality-metrics-fastqc/39d9a6fd-591e-431a-bae6-575462aeded7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIOMZNNIM/@@download/4DNFIOMZNNIM.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/6af5d4a5-c67e-4f91-abf7-9e73b617aa78/4DNFIOMZNNIM.fastq.gz", "@id": "/files-fastq/4DNFIOMZNNIM/", "display_title": "4DNFIOMZNNIM.fastq.gz", "md5sum": "7d5f348bb09bf35b6de78d3ebeb85693", "file_classification": "raw file", "upload_key": "6af5d4a5-c67e-4f91-abf7-9e73b617aa78/4DNFIOMZNNIM.fastq.gz", "accession": "4DNFIOMZNNIM", "uuid": "6af5d4a5-c67e-4f91-abf7-9e73b617aa78", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 299213104, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "de856c6e-453e-4560-80a7-e5b366cd4d08", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 6022791, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOMZNNIM/fastqc_report.html", "@id": "/quality-metrics-fastqc/de856c6e-453e-4560-80a7-e5b366cd4d08/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIJ8O952Z/@@download/4DNFIJ8O952Z.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/adac3592-9e8f-4ba0-b563-116d06ea50aa/4DNFIJ8O952Z.fastq.gz", "@id": "/files-fastq/4DNFIJ8O952Z/", "display_title": "4DNFIJ8O952Z.fastq.gz", "md5sum": "536489f4ff2e408efdc5be92e9acdbd0", "file_classification": "raw file", "upload_key": "adac3592-9e8f-4ba0-b563-116d06ea50aa/4DNFIJ8O952Z.fastq.gz", "accession": "4DNFIJ8O952Z", "uuid": "adac3592-9e8f-4ba0-b563-116d06ea50aa", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 271835500, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5d159efc-91aa-435a-a0b1-6a78d35bc962", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5468850, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ8O952Z/fastqc_report.html", "@id": "/quality-metrics-fastqc/5d159efc-91aa-435a-a0b1-6a78d35bc962/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICLQZ3UF/@@download/4DNFICLQZ3UF.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/98e6fba0-8de3-42c9-9d2c-66b94d07514e/4DNFICLQZ3UF.fastq.gz", "@id": "/files-fastq/4DNFICLQZ3UF/", "display_title": "4DNFICLQZ3UF.fastq.gz", "md5sum": "d7a3f11a4df84e998c37ed379ef5c471", "file_classification": "raw file", "upload_key": "98e6fba0-8de3-42c9-9d2c-66b94d07514e/4DNFICLQZ3UF.fastq.gz", "accession": "4DNFICLQZ3UF", "uuid": "98e6fba0-8de3-42c9-9d2c-66b94d07514e", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 273754528, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "45dc5ffb-c86f-45cd-b735-1cbf96f52a91", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5452224, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICLQZ3UF/fastqc_report.html", "@id": "/quality-metrics-fastqc/45dc5ffb-c86f-45cd-b735-1cbf96f52a91/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIWKGVKBW/@@download/4DNFIWKGVKBW.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/5e9d1bd9-4edf-42ba-8050-0484f97d9fd0/4DNFIWKGVKBW.fastq.gz", "@id": "/files-fastq/4DNFIWKGVKBW/", "display_title": "4DNFIWKGVKBW.fastq.gz", "md5sum": "52607a9ecf5c4fe4fa94c263ed51d4ab", "file_classification": "raw file", "upload_key": "5e9d1bd9-4edf-42ba-8050-0484f97d9fd0/4DNFIWKGVKBW.fastq.gz", "accession": "4DNFIWKGVKBW", "uuid": "5e9d1bd9-4edf-42ba-8050-0484f97d9fd0", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 285016555, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "0a89ea33-80fa-46df-9460-b155c734fc2b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5702503, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWKGVKBW/fastqc_report.html", "@id": "/quality-metrics-fastqc/0a89ea33-80fa-46df-9460-b155c734fc2b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIG1O2CDG/@@download/4DNFIG1O2CDG.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/bbf02d6e-e49b-4a3b-81d8-65d8695b5c14/4DNFIG1O2CDG.fastq.gz", "@id": "/files-fastq/4DNFIG1O2CDG/", "display_title": "4DNFIG1O2CDG.fastq.gz", "md5sum": "d9db3d214cc4388a49abc8e4a1ff000c", "file_classification": "raw file", "upload_key": "bbf02d6e-e49b-4a3b-81d8-65d8695b5c14/4DNFIG1O2CDG.fastq.gz", "accession": "4DNFIG1O2CDG", "uuid": "bbf02d6e-e49b-4a3b-81d8-65d8695b5c14", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 209894363, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "287e0eaa-3472-4b0e-8bbc-5801bc0e0b7b", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4239770, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIG1O2CDG/fastqc_report.html", "@id": "/quality-metrics-fastqc/287e0eaa-3472-4b0e-8bbc-5801bc0e0b7b/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI6SNLD3W/@@download/4DNFI6SNLD3W.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a14aff9c-0b60-45be-b902-5a79d2476c15/4DNFI6SNLD3W.fastq.gz", "@id": "/files-fastq/4DNFI6SNLD3W/", "display_title": "4DNFI6SNLD3W.fastq.gz", "md5sum": "4e29374f6ceeb8de44e4e85e69ed043f", "file_classification": "raw file", "upload_key": "a14aff9c-0b60-45be-b902-5a79d2476c15/4DNFI6SNLD3W.fastq.gz", "accession": "4DNFI6SNLD3W", "uuid": "a14aff9c-0b60-45be-b902-5a79d2476c15", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 220257938, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "36ccc8be-90eb-4675-89a0-b34c367d3051", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4356346, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6SNLD3W/fastqc_report.html", "@id": "/quality-metrics-fastqc/36ccc8be-90eb-4675-89a0-b34c367d3051/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI8BX8YA7/@@download/4DNFI8BX8YA7.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c6d0b96b-e59c-49a5-b67d-a771bbb3c123/4DNFI8BX8YA7.fastq.gz", "@id": "/files-fastq/4DNFI8BX8YA7/", "display_title": "4DNFI8BX8YA7.fastq.gz", "md5sum": "3137a114f3f301e588216183657f6b1b", "file_classification": "raw file", "upload_key": "c6d0b96b-e59c-49a5-b67d-a771bbb3c123/4DNFI8BX8YA7.fastq.gz", "accession": "4DNFI8BX8YA7", "uuid": "c6d0b96b-e59c-49a5-b67d-a771bbb3c123", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 223612721, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "f4e9d631-df52-49b5-b47f-2aa5169a2f77", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4422188, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI8BX8YA7/fastqc_report.html", "@id": "/quality-metrics-fastqc/f4e9d631-df52-49b5-b47f-2aa5169a2f77/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI29W9PQN/@@download/4DNFI29W9PQN.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/7fe8108b-1420-40e4-99a3-2e3b46b8fb9d/4DNFI29W9PQN.fastq.gz", "@id": "/files-fastq/4DNFI29W9PQN/", "display_title": "4DNFI29W9PQN.fastq.gz", "md5sum": "e2075289e3fb733f26c455fee9419894", "file_classification": "raw file", "upload_key": "7fe8108b-1420-40e4-99a3-2e3b46b8fb9d/4DNFI29W9PQN.fastq.gz", "accession": "4DNFI29W9PQN", "uuid": "7fe8108b-1420-40e4-99a3-2e3b46b8fb9d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 229326489, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "7fc80789-9f92-49d5-b9fe-04ba928c8b3c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4569778, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI29W9PQN/fastqc_report.html", "@id": "/quality-metrics-fastqc/7fc80789-9f92-49d5-b9fe-04ba928c8b3c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIK3T1GUA/@@download/4DNFIK3T1GUA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/77ce4846-cb88-4bd7-b947-a9b22ebce5e1/4DNFIK3T1GUA.fastq.gz", "@id": "/files-fastq/4DNFIK3T1GUA/", "display_title": "4DNFIK3T1GUA.fastq.gz", "md5sum": "20ce0df42dd83d5b2c4a06d94dc6b9b9", "file_classification": "raw file", "upload_key": "77ce4846-cb88-4bd7-b947-a9b22ebce5e1/4DNFIK3T1GUA.fastq.gz", "accession": "4DNFIK3T1GUA", "uuid": "77ce4846-cb88-4bd7-b947-a9b22ebce5e1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 205781945, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "2c4acd1b-4082-44b8-8285-bf501ab59ba2", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4111432, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK3T1GUA/fastqc_report.html", "@id": "/quality-metrics-fastqc/2c4acd1b-4082-44b8-8285-bf501ab59ba2/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFING1R3L8/@@download/4DNFING1R3L8.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b80aebf4-aebd-4e03-9867-014669d920f7/4DNFING1R3L8.fastq.gz", "@id": "/files-fastq/4DNFING1R3L8/", "display_title": "4DNFING1R3L8.fastq.gz", "md5sum": "b0616228d7e76f14af171a41579235c4", "file_classification": "raw file", "upload_key": "b80aebf4-aebd-4e03-9867-014669d920f7/4DNFING1R3L8.fastq.gz", "accession": "4DNFING1R3L8", "uuid": "b80aebf4-aebd-4e03-9867-014669d920f7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 262203605, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b35dd32b-6f19-4485-ac11-1bb467a47ee1", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5204091, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFING1R3L8/fastqc_report.html", "@id": "/quality-metrics-fastqc/b35dd32b-6f19-4485-ac11-1bb467a47ee1/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI2IF9NA1/@@download/4DNFI2IF9NA1.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/b9c9d375-55c4-4788-b0ca-02524b8b3676/4DNFI2IF9NA1.fastq.gz", "@id": "/files-fastq/4DNFI2IF9NA1/", "display_title": "4DNFI2IF9NA1.fastq.gz", "md5sum": "5303b53aaad146a96ed9bc89c3311870", "file_classification": "raw file", "upload_key": "b9c9d375-55c4-4788-b0ca-02524b8b3676/4DNFI2IF9NA1.fastq.gz", "accession": "4DNFI2IF9NA1", "uuid": "b9c9d375-55c4-4788-b0ca-02524b8b3676", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 260800203, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "083ab606-60c6-4d1f-aa38-516a7766e299", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5220379, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2IF9NA1/fastqc_report.html", "@id": "/quality-metrics-fastqc/083ab606-60c6-4d1f-aa38-516a7766e299/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIBCKWXGJ/@@download/4DNFIBCKWXGJ.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/2a0fe9d9-287e-41f0-8cb9-7a63d82aaba1/4DNFIBCKWXGJ.fastq.gz", "@id": "/files-fastq/4DNFIBCKWXGJ/", "display_title": "4DNFIBCKWXGJ.fastq.gz", "md5sum": "53538793b215e8a1dc1b47589ae9228a", "file_classification": "raw file", "upload_key": "2a0fe9d9-287e-41f0-8cb9-7a63d82aaba1/4DNFIBCKWXGJ.fastq.gz", "accession": "4DNFIBCKWXGJ", "uuid": "2a0fe9d9-287e-41f0-8cb9-7a63d82aaba1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 260947997, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "bf37816f-da4d-436c-90e6-20c757258761", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5176355, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIBCKWXGJ/fastqc_report.html", "@id": "/quality-metrics-fastqc/bf37816f-da4d-436c-90e6-20c757258761/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI92M1WM6/@@download/4DNFI92M1WM6.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/48ea3dd2-bb04-472d-a3db-cc3c8bd12cb4/4DNFI92M1WM6.fastq.gz", "@id": "/files-fastq/4DNFI92M1WM6/", "display_title": "4DNFI92M1WM6.fastq.gz", "md5sum": "3562351787374badb73ab767afbebe23", "file_classification": "raw file", "upload_key": "48ea3dd2-bb04-472d-a3db-cc3c8bd12cb4/4DNFI92M1WM6.fastq.gz", "accession": "4DNFI92M1WM6", "uuid": "48ea3dd2-bb04-472d-a3db-cc3c8bd12cb4", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 278467442, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c4a5cd88-6fe8-4599-ba8e-15514f10cf01", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5578777, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI92M1WM6/fastqc_report.html", "@id": "/quality-metrics-fastqc/c4a5cd88-6fe8-4599-ba8e-15514f10cf01/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZSA681P/@@download/4DNFIZSA681P.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/e2fb2a76-874b-4c2d-be0b-e7c2ce2031f6/4DNFIZSA681P.fastq.gz", "@id": "/files-fastq/4DNFIZSA681P/", "display_title": "4DNFIZSA681P.fastq.gz", "md5sum": "1d4c42c3b85c02fd40630520e739a20c", "file_classification": "raw file", "upload_key": "e2fb2a76-874b-4c2d-be0b-e7c2ce2031f6/4DNFIZSA681P.fastq.gz", "accession": "4DNFIZSA681P", "uuid": "e2fb2a76-874b-4c2d-be0b-e7c2ce2031f6", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 252387928, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "d34ffdfc-a443-4dc4-9ecf-e472e77106b8", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4874633, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZSA681P/fastqc_report.html", "@id": "/quality-metrics-fastqc/d34ffdfc-a443-4dc4-9ecf-e472e77106b8/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIMLJH4RV/@@download/4DNFIMLJH4RV.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4d01905f-7e5f-4513-b03e-da9d1c1499ad/4DNFIMLJH4RV.fastq.gz", "@id": "/files-fastq/4DNFIMLJH4RV/", "display_title": "4DNFIMLJH4RV.fastq.gz", "md5sum": "640d1cf4555414b67a7fd04bd8c85be9", "file_classification": "raw file", "upload_key": "4d01905f-7e5f-4513-b03e-da9d1c1499ad/4DNFIMLJH4RV.fastq.gz", "accession": "4DNFIMLJH4RV", "uuid": "4d01905f-7e5f-4513-b03e-da9d1c1499ad", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 248901739, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "aea91169-5db8-46e9-af57-55b236fa5a20", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4911468, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMLJH4RV/fastqc_report.html", "@id": "/quality-metrics-fastqc/aea91169-5db8-46e9-af57-55b236fa5a20/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIZHE6171/@@download/4DNFIZHE6171.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/522d20ee-d7f3-41c8-9a16-f081b245e304/4DNFIZHE6171.fastq.gz", "@id": "/files-fastq/4DNFIZHE6171/", "display_title": "4DNFIZHE6171.fastq.gz", "md5sum": "1fa11461ce83a72c176a520f23448e6c", "file_classification": "raw file", "upload_key": "522d20ee-d7f3-41c8-9a16-f081b245e304/4DNFIZHE6171.fastq.gz", "accession": "4DNFIZHE6171", "uuid": "522d20ee-d7f3-41c8-9a16-f081b245e304", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 116016378, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "9e9f04a4-3ff3-4801-abf5-c6eaa438af7c", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 2434848, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZHE6171/fastqc_report.html", "@id": "/quality-metrics-fastqc/9e9f04a4-3ff3-4801-abf5-c6eaa438af7c/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIR3RK5UK/@@download/4DNFIR3RK5UK.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/eed29c61-06e6-4d53-b118-476d329b666c/4DNFIR3RK5UK.fastq.gz", "@id": "/files-fastq/4DNFIR3RK5UK/", "display_title": "4DNFIR3RK5UK.fastq.gz", "md5sum": "04ca74427ad86d83992336922bc4c302", "file_classification": "raw file", "upload_key": "eed29c61-06e6-4d53-b118-476d329b666c/4DNFIR3RK5UK.fastq.gz", "accession": "4DNFIR3RK5UK", "uuid": "eed29c61-06e6-4d53-b118-476d329b666c", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 178668449, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "e2becee9-276a-440f-85fe-3df9183016e7", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3588317, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR3RK5UK/fastqc_report.html", "@id": "/quality-metrics-fastqc/e2becee9-276a-440f-85fe-3df9183016e7/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITMQZH1Q/@@download/4DNFITMQZH1Q.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/4bcc2370-8636-49f7-a940-cea9734b13a8/4DNFITMQZH1Q.fastq.gz", "@id": "/files-fastq/4DNFITMQZH1Q/", "display_title": "4DNFITMQZH1Q.fastq.gz", "md5sum": "a0465d32359f71e1aaddb75be1de8e7c", "file_classification": "raw file", "upload_key": "4bcc2370-8636-49f7-a940-cea9734b13a8/4DNFITMQZH1Q.fastq.gz", "accession": "4DNFITMQZH1Q", "uuid": "4bcc2370-8636-49f7-a940-cea9734b13a8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 180731267, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "dd524a01-1210-49a5-ab1d-19f488bf4519", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3503996, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITMQZH1Q/fastqc_report.html", "@id": "/quality-metrics-fastqc/dd524a01-1210-49a5-ab1d-19f488bf4519/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFICI93MQC/@@download/4DNFICI93MQC.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0de63ace-8054-48ce-8f91-09dba8cfde35/4DNFICI93MQC.fastq.gz", "@id": "/files-fastq/4DNFICI93MQC/", "display_title": "4DNFICI93MQC.fastq.gz", "md5sum": "f838d90ad1e3e358b25b480621fe61be", "file_classification": "raw file", "upload_key": "0de63ace-8054-48ce-8f91-09dba8cfde35/4DNFICI93MQC.fastq.gz", "accession": "4DNFICI93MQC", "uuid": "0de63ace-8054-48ce-8f91-09dba8cfde35", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 246521454, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "90b78751-bf36-4642-af31-8b9a4f836027", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4917213, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICI93MQC/fastqc_report.html", "@id": "/quality-metrics-fastqc/90b78751-bf36-4642-af31-8b9a4f836027/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI1UNVKAA/@@download/4DNFI1UNVKAA.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/f208c3ea-bacc-4f4d-9058-dcbcc76db355/4DNFI1UNVKAA.fastq.gz", "@id": "/files-fastq/4DNFI1UNVKAA/", "display_title": "4DNFI1UNVKAA.fastq.gz", "md5sum": "ca6dc77e5e23f62b29f28491d912608f", "file_classification": "raw file", "upload_key": "f208c3ea-bacc-4f4d-9058-dcbcc76db355/4DNFI1UNVKAA.fastq.gz", "accession": "4DNFI1UNVKAA", "uuid": "f208c3ea-bacc-4f4d-9058-dcbcc76db355", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 202719134, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "df88ec67-c474-4fa0-83ed-55fc9d6f0879", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3948803, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1UNVKAA/fastqc_report.html", "@id": "/quality-metrics-fastqc/df88ec67-c474-4fa0-83ed-55fc9d6f0879/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFITSZ8GX4/@@download/4DNFITSZ8GX4.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/630b8982-1aea-4fcf-856f-dae82d48afd1/4DNFITSZ8GX4.fastq.gz", "@id": "/files-fastq/4DNFITSZ8GX4/", "display_title": "4DNFITSZ8GX4.fastq.gz", "md5sum": "e4ef6445cb5ad98990fd8aae974b518f", "file_classification": "raw file", "upload_key": "630b8982-1aea-4fcf-856f-dae82d48afd1/4DNFITSZ8GX4.fastq.gz", "accession": "4DNFITSZ8GX4", "uuid": "630b8982-1aea-4fcf-856f-dae82d48afd1", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 196824463, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "23c45bbe-ffb6-462b-aace-d096087de442", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 3914243, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFITSZ8GX4/fastqc_report.html", "@id": "/quality-metrics-fastqc/23c45bbe-ffb6-462b-aace-d096087de442/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFIPHQORPP/@@download/4DNFIPHQORPP.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/a87f1dc1-16d9-467e-bbb5-ed52b3a5877d/4DNFIPHQORPP.fastq.gz", "@id": "/files-fastq/4DNFIPHQORPP/", "display_title": "4DNFIPHQORPP.fastq.gz", "md5sum": "1b08f95c0e6c113859d25eb90a5012b8", "file_classification": "raw file", "upload_key": "a87f1dc1-16d9-467e-bbb5-ed52b3a5877d/4DNFIPHQORPP.fastq.gz", "accession": "4DNFIPHQORPP", "uuid": "a87f1dc1-16d9-467e-bbb5-ed52b3a5877d", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 201060614, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "c95045d9-fbd0-4223-b836-ff9ca2af0f59", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4190320, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPHQORPP/fastqc_report.html", "@id": "/quality-metrics-fastqc/c95045d9-fbd0-4223-b836-ff9ca2af0f59/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI3C5E6UL/@@download/4DNFI3C5E6UL.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/0b3a8f93-3e28-4644-b407-2c4d0a90cdb3/4DNFI3C5E6UL.fastq.gz", "@id": "/files-fastq/4DNFI3C5E6UL/", "display_title": "4DNFI3C5E6UL.fastq.gz", "md5sum": "993523495297c78e9fdbd6dc24e58db8", "file_classification": "raw file", "upload_key": "0b3a8f93-3e28-4644-b407-2c4d0a90cdb3/4DNFI3C5E6UL.fastq.gz", "accession": "4DNFI3C5E6UL", "uuid": "0b3a8f93-3e28-4644-b407-2c4d0a90cdb3", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 236920510, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "4fbbaace-261c-4bb3-8c1e-b524f1e0e48a", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4687835, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3C5E6UL/fastqc_report.html", "@id": "/quality-metrics-fastqc/4fbbaace-261c-4bb3-8c1e-b524f1e0e48a/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFI52PNW61/@@download/4DNFI52PNW61.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/c58f542c-f4cd-40ce-ac3d-d1b29f4dada7/4DNFI52PNW61.fastq.gz", "@id": "/files-fastq/4DNFI52PNW61/", "display_title": "4DNFI52PNW61.fastq.gz", "md5sum": "c9d292f3ffb7b48c6241e6defa658034", "file_classification": "raw file", "upload_key": "c58f542c-f4cd-40ce-ac3d-d1b29f4dada7/4DNFI52PNW61.fastq.gz", "accession": "4DNFI52PNW61", "uuid": "c58f542c-f4cd-40ce-ac3d-d1b29f4dada7", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 226937290, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "5236e059-f556-49d7-9804-78e0f3b54642", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4494656, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI52PNW61/fastqc_report.html", "@id": "/quality-metrics-fastqc/5236e059-f556-49d7-9804-78e0f3b54642/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}, {"@type": ["FileFastq", "File", "Item"], "href": "/files-fastq/4DNFISU5AU6U/@@download/4DNFISU5AU6U.fastq.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/files/d689f9d9-f7eb-45b2-9be2-bcc1023338e8/4DNFISU5AU6U.fastq.gz", "@id": "/files-fastq/4DNFISU5AU6U/", "display_title": "4DNFISU5AU6U.fastq.gz", "md5sum": "c5d7dd3fc772897060b255f352542da8", "file_classification": "raw file", "upload_key": "d689f9d9-f7eb-45b2-9be2-bcc1023338e8/4DNFISU5AU6U.fastq.gz", "accession": "4DNFISU5AU6U", "uuid": "d689f9d9-f7eb-45b2-9be2-bcc1023338e8", "status": "released", "file_type_detailed": "reads (fastq)", "file_type": "reads", "file_size": 266161403, "lab": {"name": "ana-pombo-lab", "display_title": "Ana Pombo, MDC", "status": "current", "uuid": "cf5abe29-1cf9-4413-b02e-664b47a6d53d", "@type": ["Lab", "Item"], "@id": "/labs/ana-pombo-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.cf5abe29-1cf9-4413-b02e-664b47a6d53d"]}}, "quality_metric": {"uuid": "b4a21129-f49f-4f75-b61e-64b6c05c4511", "@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 5298544, "display_title": "QualityMetricFastqc from 2019-12-12", "status": "released", "Sequence length": "35-75", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISU5AU6U/fastqc_report.html", "@id": "/quality-metrics-fastqc/b4a21129-f49f-4f75-b61e-64b6c05c4511/", "overall_quality_status": "PASS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "file_format": {"file_format": "fastq", "@id": "/file-formats/fastq/", "display_title": "fastq", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Ana Pombo, MDC", "experiment_type": "GAM", "experiment_bucket": "raw file", "dataset": "GAM on 46C mouse ES cells", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "46C with Sox1-GFP", "lab_name": "Ana Pombo, MDC"}, "external_references": []}], "@id": "/experiments-seq/4DNEXTQ35QAS/", "uuid": "6d4f064d-76ea-4492-bfa7-62a9ce633116", "display_title": "GAM on 46C with Sox1-GFP - 4DNEXTQ35QAS", "biosample": {"@id": "/biosamples/4DNBSXU4PXTD/", "uuid": "b56eb276-7927-48b3-aa10-0fd77a68c958", "display_title": "4DNBSXU4PXTD", "status": "released", "accession": "4DNBSXU4PXTD", "biosample_type": "stem cells", "biosource_summary": "46C with Sox1-GFP", "treatments_summary": "None", "@type": ["Biosample", "Item"], "biosample_category": ["Mouse stem cell"], "modifications_summary": "None", "biosource": [{"@type": ["Biosource", "Item"], "display_title": "46C with Sox1-GFP - 4DNSRNTW8KVA", "biosource_type": "stem cell derived cell line", "override_biosource_name": "46C with Sox1-GFP", "accession": "4DNSRNTW8KVA", "status": "released", "cell_line_tier": "Unclassified", "@id": "/biosources/4DNSRNTW8KVA/", "uuid": "15180a95-b2ca-4be7-99b1-7a9f7b2620aa", "organism": {"@type": ["Organism", "Item"], "display_title": "M. musculus", "@id": "/organisms/10090/", "name": "mouse", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "status": "released", "scientific_name": "Mus musculus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"display_title": "stem cell", "term_name": "stem cell", "uuid": "082f5be3-3617-4d3e-9ee9-78df53a71802", "@id": "/ontology-terms/CL:0000034/", "synonyms": ["animal stem cell"], "status": "released", "term_id": "CL:0000034", "@type": ["OntologyTerm", "Item"], "preferred_name": "stem cell", "slim_terms": [{"uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "display_title": "cell", "status": "current", "@id": "/ontology-terms/GO:0005623/", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "display_title": "cell", "status": "released", "@id": "/ontology-terms/CL:0000000/", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"uuid": "1dd66cb6-7900-405f-a7ea-0f88966ca969", "term_id": "EFO:0005484", "preferred_name": "46C", "term_name": "46C", "@id": "/ontology-terms/EFO:0005484/", "synonyms": ["46C ES", "ES46C", "ES-46C"], "@type": ["OntologyTerm", "Item"], "display_title": "46C", "status": "released", "slim_terms": [{"display_title": "cell", "status": "current", "@type": ["OntologyTerm", "Item"], "uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "@id": "/ontology-terms/GO:0005623/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "cell", "status": "released", "@type": ["OntologyTerm", "Item"], "uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "@id": "/ontology-terms/CL:0000000/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "badges": [{"messages": ["Biosample missing Cell Culture Details"], "badge": {"@id": "/badges/biosample-metadata-incomplete/", "badge_classification": "Warning", "title": "Biosample Metadata Incomplete", "display_title": "Biosample Metadata Incomplete", "status": "released", "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "@type": ["Badge", "Item"], "badge_icon": "/static/img/badges/biosample-icon.svg", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "tissue_organ_info": {"tissue_source": "stem cell"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "external_references": [], "experiment_type": {"@type": ["ExperimentType", "Item"], "other_tags": ["DNA-DNA", "Multi-contact", "3D", "Single Cell"], "assay_subclassification": "DNA-DNA Multi-way Interactions", "experiment_category": "Sequencing", "display_title": "GAM", "assay_subclass_short": "Ligation-free 3C", "title": "GAM", "@id": "/experiment-types/gam/", "uuid": "1c41d7cc-8bfb-402f-b752-9db223de86f4", "status": "released", "assay_classification": "Ligation-free 3C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_categorizer": {"field": "Default"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2020-08-11T18:42:50.673796+00:00"}}], "experimentset_type": "replicate", "@id": "/experiment-set-replicates/4DNESALAVZ67/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "c5096cd4-0e78-4a8a-90c5-1206a0003ac5", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNESALAVZ67", "external_references": [], "produced_in_pub": {"status": "current", "@id": "/publications/5946fa1d-a501-4676-a602-cc28cad65a8b/", "ID": "PMID:37336949", "abstract": "Technology for measuring 3D genome topology is increasingly important for studying gene regulation, for genome assembly and for mapping of genome rearrangements. Hi-C and other ligation-based methods have become routine but have specific biases. Here, we develop multiplex-GAM, a faster and more affordable version of genome architecture mapping (GAM), a ligation-free technique that maps chromatin contacts genome-wide. We perform a detailed comparison of multiplex-GAM and Hi-C using mouse embryonic stem cells. When examining the strongest contacts detected by either method, we find that only one-third of these are shared. The strongest contacts specifically found in GAM often involve 'active' regions, including many transcribed genes and super-enhancers, whereas in Hi-C they more often contain 'inactive' regions. Our work shows that active genomic regions are involved in extensive complex contacts that are currently underestimated in ligation-based approaches, and highlights the need for orthogonal advances in genome-wide contact mapping technologies.", "@type": ["Publication", "Item"], "title": "Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.", "date_published": "2023-06-19", "uuid": "5946fa1d-a501-4676-a602-cc28cad65a8b", "journal": "Nature methods", "url": "https://www.ncbi.nlm.nih.gov/pubmed/37336949", "short_attribution": "Beagrie RA et al. (2023)", "display_title": "Beagrie RA et al. (2023) PMID:37336949", "authors": ["Beagrie RA", "Thieme CJ", "Annunziatella C", "Baugher C", "Zhang Y", "Schueler M", "Kukalev A", "Kempfer R", "Chiariello AM", "Bianco S", "Li Y", "Davis T", "Scialdone A", "Welch LR", "Nicodemi M", "Pombo A"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "pubs_using": [{"status": "current", "uuid": "613340da-ecdc-44bd-ae74-437b2ad65ac6", "@type": ["Publication", "Item"], "@id": "/publications/613340da-ecdc-44bd-ae74-437b2ad65ac6/", "display_title": "Winick-Ng W et al. (2021) PMID:34789882", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "current", "uuid": "53947f85-e28f-405f-b92e-92ca7bdb2aea", "@type": ["Publication", "Item"], "@id": "/publications/53947f85-e28f-405f-b92e-92ca7bdb2aea/", "display_title": "Szabo D et al. (2024) PMID:38766140", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "publications_of_set": [{"abstract": "Technology for measuring 3D genome topology is increasingly important for studying gene regulation, for genome assembly and for mapping of genome rearrangements. Hi-C and other ligation-based methods have become routine but have specific biases. Here, we develop multiplex-GAM, a faster and more affordable version of genome architecture mapping (GAM), a ligation-free technique that maps chromatin contacts genome-wide. We perform a detailed comparison of multiplex-GAM and Hi-C using mouse embryonic stem cells. When examining the strongest contacts detected by either method, we find that only one-third of these are shared. The strongest contacts specifically found in GAM often involve 'active' regions, including many transcribed genes and super-enhancers, whereas in Hi-C they more often contain 'inactive' regions. Our work shows that active genomic regions are involved in extensive complex contacts that are currently underestimated in ligation-based approaches, and highlights the need for orthogonal advances in genome-wide contact mapping technologies.", "ID": "PMID:37336949", "journal": "Nature methods", "display_title": "Beagrie RA et al. (2023) PMID:37336949", "@type": ["Publication", "Item"], "status": "current", "@id": "/publications/5946fa1d-a501-4676-a602-cc28cad65a8b/", "uuid": "5946fa1d-a501-4676-a602-cc28cad65a8b", "date_published": "2023-06-19", "title": "Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.", "authors": ["Beagrie RA", "Thieme CJ", "Annunziatella C", "Baugher C", "Zhang Y", "Schueler M", "Kukalev A", "Kempfer R", "Chiariello AM", "Bianco S", "Li Y", "Davis T", "Scialdone A", "Welch LR", "Nicodemi M", "Pombo A"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"abstract": "The three-dimensional (3D) structure of chromatin is intrinsically associated with gene regulation and cell function(1-3). Methods based on chromatin conformation capture have mapped chromatin structures in neuronal systems such as in vitro differentiated neurons, neurons isolated through fluorescence-activated cell sorting from cortical tissues pooled from different animals and from dissociated whole hippocampi(4-6). However, changes in chromatin organization captured by imaging, such as the relocation of Bdnf away from the nuclear periphery after activation(7), are invisible with such approaches(8). Here we developed immunoGAM, an extension of genome architecture mapping (GAM)(2,9), to map 3D chromatin topology genome-wide in specific brain cell types, without tissue disruption, from single animals. GAM is a ligation-free technology that maps genome topology by sequencing the DNA content from thin (about 220 nm) nuclear cryosections. Chromatin interactions are identified from the increased probability of co-segregation of contacting loci across a collection of nuclear slices. ImmunoGAM expands the scope of GAM to enable the selection of specific cell types using low cell numbers (approximately 1,000 cells) within a complex tissue and avoids tissue dissociation(2,10). We report cell-type specialized 3D chromatin structures at multiple genomic scales that relate to patterns of gene expression. We discover extensive 'melting' of long genes when they are highly expressed and/or have high chromatin accessibility. The contacts most specific of neuron subtypes contain genes associated with specialized processes, such as addiction and synaptic plasticity, which harbour putative binding sites for neuronal transcription factors within accessible chromatin regions. Moreover, sensory receptor genes are preferentially found in heterochromatic compartments in brain cells, which establish strong contacts across tens of megabases. Our results demonstrate that highly specific chromatin conformations in brain cells are tightly related to gene regulation mechanisms and specialized functions.", "ID": "PMID:34789882", "journal": "Nature", "display_title": "Winick-Ng W et al. (2021) PMID:34789882", "@type": ["Publication", "Item"], "status": "current", "@id": "/publications/613340da-ecdc-44bd-ae74-437b2ad65ac6/", "uuid": "613340da-ecdc-44bd-ae74-437b2ad65ac6", "date_published": "2021-11", "title": "Cell-type specialization is encoded by specific chromatin topologies.", "authors": ["Winick-Ng W", "Kukalev A", "Harabula I", "Zea-Redondo L", "Szabo D", "Meijer M", "Serebreni L", "Zhang Y", "Bianco S", "Chiariello AM", "Irastorza-Azcarate I", "Thieme CJ", "Sparks TM", "Carvalho S", "Fiorillo L", "Musella F", "Irani E", "Triglia ET", "Kolodziejczyk AA", "Abentung A", "Apostolova G", "Paul EJ", "Franke V", "Kempfer R", "Akalin A", "Teichmann SA", "Dechant G", "Ungless MA", "Nicodemi M", "Welch L", "Castelo-Branco G", "Pombo A"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"abstract": "Midbrain dopamine neurons (DNs) respond to a first exposure to addictive drugs and play key roles in chronic drug usage (1-3) . As the synaptic and transcriptional changes that follow an acute cocaine exposure are mostly resolved within a few days (4,5) , the molecular changes that encode the long-term cellular memory of the exposure within DNs remain unknown. To investigate whether a single cocaine exposure induces long-term changes in the 3D genome structure of DNs, we applied Genome Architecture Mapping and single nucleus transcriptomic analyses in the mouse midbrain. We found extensive rewiring of 3D genome architecture at 24 hours past exposure which remains or worsens by 14 days, outlasting transcriptional responses. The cocaine-induced chromatin rewiring occurs at all genomic scales and affects genes with major roles in cocaine-induced synaptic changes. A single cocaine exposure triggers extensive long-lasting changes in chromatin condensation in post-synaptic and post-transcriptional regulatory genes, for example the unfolding of Rbfox1 which becomes most prominent 14 days post exposure. Finally, structurally remodeled genes are most expressed in a specific DN sub-type characterized by low expression of the dopamine auto-receptor Drd2 , a key feature of highly cocaine-sensitive cells. These results reveal an important role for long-lasting 3D genome remodelling in the cellular memory of a single cocaine exposure, providing new hypotheses for understanding the inception of drug addiction and 3D genome plasticity.", "ID": "PMID:38766140", "journal": "bioRxiv : the preprint server for biology", "display_title": "Szabo D et al. (2024) PMID:38766140", "@type": ["Publication", "Item"], "status": "current", "@id": "/publications/53947f85-e28f-405f-b92e-92ca7bdb2aea/", "uuid": "53947f85-e28f-405f-b92e-92ca7bdb2aea", "date_published": "2024-05-12", "title": "A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons.", "authors": ["Szabo D", "Franke V", "Bianco S", "Batiuk MY", "Paul EJ", "Kukalev A", "Pfisterer UG", "Irastorza-Azcarate I", "Chiariello AM", "Demharter S", "Zea-Redondo L", "Lopez-Atalaya JP", "Nicodemi M", "Akalin A", "Khodosevich K", "Ungless MA", "Winick-Ng W", "Pombo A"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "number_of_experiments": 1, "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/biosamples/4DNBSXU4PXTD/", "embedded_path": "experiments_in_set.biosample.badges", "item": {"messages": ["Biosample missing Cell Culture Details"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}, {"parent": "/experiment-set-replicates/4DNESALAVZ67/", "embedded_path": "badges", "item": {"messages": ["Replicate set contains only a single biological replicate"], "badge": {"commendation": null, "warning": "Replicate Numbers", "uuid": "24a64a84-3c33-4d76-aaf2-e5ef45eff347", "@id": "/badges/replicate-numbers/", "badge_icon": "/static/img/badges/replicates-orange-circle.svg", "description": "Issues with replicate numbers"}}}]}, "validation-errors": []}