ExperimentSetReplicate

ExperimentSet4DNESCMG3UKX
released
View JSON

Single cell methyl Hi-C (snm3c) in hippocampus tissue from postmortem neurotypical donor - hc40

   June 4th, 2025 at 7:31pm
Source Publication
Epigenetic and 3D genome reprogramming during the aging of human hippocampus.
Zemke NR, Lee S, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
hippocampal formation
Experiment Type(s) 
single cell Methyl Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
None

Supplementary Files1 Processed Files Collection

Released

Supplementary files (contact and allc files) (2 files)

Processed files include 1) contact file containing chromatin interactions in compressed tsv file format and 2) ALLC (ALL Cytosine) file containing base level methylation and coverage count in compressed tsv format, additional details on ALLC format here: https://lhqing.github.io/ALLCools/start/input_files.html