ExperimentSetReplicate

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ExperimentSet4DNESCMX7L58
released
View JSON

HiC experiment done on HeLa-S3

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESCMX7L58
Multiple Experiments
File
4DNFI65WJKMT
contact list-combined (pairs)
39.58 GB
-
File
4DNFICEGAHRC
contact matrix (hic)
14.5 GB
-
File
4DNFIBM9QCFG
contact matrix (mcool)
17.27 GB
File
4DNFIKKZD99T
boundaries (bed)
164.81 kB
-
File
4DNFI77IS58R
insulation score-diamond (bw)
8.07 MB
-
File
4DNFIF8EZ6YY
compartments (bw)
207.77 kB
-
Experiment
4DNEXKC6UAKT
Bio Rep 2, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
4DNFIBHZBBJJ
alignments (bam)
164.73 GB
-
File
4DNFIEI947LD
contact list-replicate (pairs)
19.23 GB
-
Experiment
4DNEXJ5GR5WZ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
4DNFIJEMHQOW
alignments (bam)
198.43 GB
-
File
4DNFIY4IX5PI
contact list-replicate (pairs)
22.98 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESCMX7L58
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI65WJKMT
2.26 billion
40.099%
26.199%
33.702%
Experiment
4DNEXKC6UAKT
Bio Rep 2, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIEI947LD
1.03 billion
38.436%
27.031%
34.533%
Experiment
4DNEXJ5GR5WZ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIY4IX5PI
1.23 billion
41.482%
25.508%
33.011%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESCMX7L58
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIBM9QCFG
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKC6UAKT
Bio Rep 2, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIBHZBBJJ
1.87 billion
14.835%
23.091%
7.103%
0.008%
0.184%
Experiment
4DNEXJ5GR5WZ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIJEMHQOW
2.3 billion
15.34%
23.191%
7.864%
0.009%
0.198%