ExperimentSetReplicate

ExperimentSet4DNESDYKBYXZ
released
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RNA-seq in HCT116, treated with via auxin-inducible degron system-9h

   June 28th, 2024 at 5:24pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX7ERWP6R
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIKSJ6H89
54.09m
46.06m
Experiment
4DNEX9V9GRKR
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFID44J82K
49.97m
44.91m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX7ERWP6R
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIXQQOFXJ
77.38m
300
Experiment
4DNEX9V9GRKR
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIWBMMYPC
62.83m
8