ExperimentSetReplicate

ExperimentSet4DNESECNR4O8
released
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in situ Hi-C on 192627 with MboI and bio-dATP

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
192627
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESECNR4O8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI6VCVYAL
671.15m
40.169%
27.368%
32.463%
Experiment
4DNEXLUNKQ9B
Bio Rep 1, Tec Rep 1
in situ Hi-C on 192627 with MboI
File
Contact List-replicate (pairs)
4DNFI3T437K2
162.56m
38.388%
13.347%
48.265%
Experiment
4DNEX8ET72CE
Bio Rep 1, Tec Rep 2
in situ Hi-C on 192627 with MboI
File
Contact List-replicate (pairs)
4DNFIKQY3ILC
188.35m
39.367%
12.663%
47.97%
Experiment
4DNEX6MBIGEW
Bio Rep 1, Tec Rep 3
in situ Hi-C on 192627 with MboI
File
Contact List-replicate (pairs)
4DNFI8KN3VWI
320.24m
41.544%
43.134%
15.322%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESECNR4O8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI43WFPJ5
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLUNKQ9B
Bio Rep 1, Tec Rep 1
in situ Hi-C on 192627 with MboI
File
Alignments (bam)
4DNFI1RHW7LD
230m
9.591%
13.176%
0.704%
5.849%
0.59%
Experiment
4DNEX8ET72CE
Bio Rep 1, Tec Rep 2
in situ Hi-C on 192627 with MboI
File
Alignments (bam)
4DNFIO53UQJ1
306.46m
15.399%
11.819%
5.705%
5.616%
0.482%
Experiment
4DNEX6MBIGEW
Bio Rep 1, Tec Rep 3
in situ Hi-C on 192627 with MboI
File
Alignments (bam)
4DNFI9XF6ZIO
536.75m
16.007%
9.202%
7.149%
7.98%
0.155%