ExperimentSetReplicate

ExperimentSet4DNESEW5JLUC
released
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in situ Hi-C on CC2517 with MboI and bio-dATP (w/out crosslinking)

   April 9th, 2017 at 5:35pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
HUVEC cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEW5JLUC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2R1VS8E
194.46m
61.534%
17.629%
20.837%
Experiment
4DNEXNM5G5NJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HUVEC cell with MboI
File
Contact List-replicate (pairs)
4DNFINB9OWO9
194.46m
61.534%
17.629%
20.837%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESEW5JLUC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIGWTMK9Y
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXNM5G5NJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HUVEC cell with MboI
File
Alignments (bam)
4DNFISO3EME3
293.14m
7.598%
21.904%
4.161%
0.002%
0.296%