ExperimentSetReplicate

ExperimentSet4DNESEXYI8T6
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RNA-seq on epiblast stem cells (EPISC) from mouse

   December 4th, 2023 at 10:44pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
in vitro differentiated cells
Sample 
KH2 ESC differentiated to stem cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXESDARVK
Bio Rep 1, Tec Rep 1
RNA-seq on KH2 ESC differentiated to stem cell
File
Read Positions (bam)
4DNFIJRS93NW
43.34m
36.99m
Experiment
4DNEX28PFNLZ
Bio Rep 2, Tec Rep 1
RNA-seq on KH2 ESC differentiated to stem cell
File
Read Positions (bam)
4DNFIC8UKQ2P
43.29m
36.99m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXESDARVK
Bio Rep 1, Tec Rep 1
RNA-seq on KH2 ESC differentiated to stem cell
File
Gene Expression (tsv)
4DNFIMCZNGQT
46.99m
222.83k
Experiment
4DNEX28PFNLZ
Bio Rep 2, Tec Rep 1
RNA-seq on KH2 ESC differentiated to stem cell
File
Gene Expression (tsv)
4DNFIJHMMBUH
48.85m
90.13k