ExperimentSetReplicate

ExperimentSet4DNESFLAEE5P
released
View JSON

Multiplexed FISH in human chromosome 20

   September 29th, 2023 at 6:04pm
Source Publication
Spatial organization of chromatin domains and compartments in single chromosomes.
Wang S, Su JH, et al., Science (New York, N.Y.) 2016

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
IMR-90
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 15 TADs on Chr20 #1-15, 15 TADs on Chr20 #15-30, 30 TADs on Chr20 #1-30
Channel
Imaging Rounds
Path
 
ch00
1-15
15 TADs on Chr20 #1-15 targeted by Alexa Fluor 647-labeled imaging oligos
ch01
1-15
15 TADs on Chr20 #15-30 targeted by ATTO 565-labeled imaging oligos
ch02
0
30 TADs on Chr20 #1-30 targeted by Alexa Fluor 647-labeled imaging oligos
ch03
-
fluorophore-labeled fiducial beads

1 Processed File

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESFLAEE5P
Multiple Experiments
File
4DNFIES5RS7Q
FOF-CT - DNA-spot/trace core (csv)
184.11 kB
Experiment
File
File Type
File Size
Experiment
4DNEXNYYMYJA
Bio Rep 1, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXYCGNHSB
Bio Rep 2, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEX1U2UARG
Bio Rep 3, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-