ExperimentSetReplicate

ExperimentSet4DNESGNRORMX
released
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RNA-seq on extra embryonic stem cells (XEN) from mouse

   December 4th, 2023 at 10:44pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
extraembryonic cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXCCNAWEV
Bio Rep 1, Tec Rep 1
RNA-seq on extraembryonic cell
File
Read Positions (bam)
4DNFIXC7CLPT
32.11m
27.81m
Experiment
4DNEXMWHSAPE
Bio Rep 2, Tec Rep 1
RNA-seq on extraembryonic cell
File
Read Positions (bam)
4DNFINRSPE3W
48.1m
40.74m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXCCNAWEV
Bio Rep 1, Tec Rep 1
RNA-seq on extraembryonic cell
File
Gene Expression (tsv)
4DNFI73DRTLC
41.44m
49.91k
Experiment
4DNEXMWHSAPE
Bio Rep 2, Tec Rep 1
RNA-seq on extraembryonic cell
File
Gene Expression (tsv)
4DNFIPA6ZI3P
65.62m
152.09k