ExperimentSetReplicate

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ExperimentSet4DNESGOHU121
released
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Replicates of in situ Hi-C on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 6 days to cardiac precursors.

   November 27th, 2019 at 7:05pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle myoblast
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESGOHU121
Multiple Experiments
File
4DNFI8LRXRXM
contact list-combined (pairs)
28.14 GB
-
File
4DNFIK6TSF51
contact matrix (hic)
13.06 GB
-
File
4DNFI3NG5PBI
contact matrix (mcool)
9.03 GB
File
4DNFI1WPNGA4
boundaries (bed)
141.21 kB
-
File
4DNFIIBY4ZZZ
insulation score-diamond (bw)
8.12 MB
-
File
4DNFIXGA5CWV
compartments (bw)
207.12 kB
-
Experiment
4DNEX1AQPY7F
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFICOA7HYQ
alignments (bam)
249.16 GB
-
File
4DNFIJW868YN
contact list-replicate (pairs)
14.65 GB
-
Experiment
4DNEXDEL3555
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFI6HNEWP8
alignments (bam)
273.69 GB
-
File
4DNFI55KDSHR
contact list-replicate (pairs)
15.54 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESGOHU121
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8LRXRXM
1.62 billion
43.907%
16.545%
39.548%
Experiment
4DNEX1AQPY7F
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFIJW868YN
787.66m
42.461%
16.725%
40.814%
Experiment
4DNEXDEL3555
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFI55KDSHR
837.19m
45.267%
16.376%
38.356%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESGOHU121
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3NG5PBI
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1AQPY7F
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFICOA7HYQ
1.51 billion
4.884%
7.861%
27.271%
7.687%
0.184%
Experiment
4DNEXDEL3555
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFI6HNEWP8
1.63 billion
4.823%
8.006%
26.891%
9.075%
0.154%