ExperimentSetReplicate

ExperimentSet4DNESHFBC56P
released
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in situ Hi-C on CC2517 with MboI and bio-dATP

   April 9th, 2017 at 5:35pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
HUVEC cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESHFBC56P
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIYL35EHL
263.33m
48.129%
15.683%
36.188%
Experiment
4DNEX2ET3OY1
Bio Rep 1, Tec Rep 1
in situ Hi-C on HUVEC cell with MboI
File
Contact List-replicate (pairs)
4DNFIHJQRHCL
163.51m
45.712%
15.483%
38.805%
Experiment
4DNEX81QMZAN
Bio Rep 1, Tec Rep 2
in situ Hi-C on HUVEC cell with MboI
File
Contact List-replicate (pairs)
4DNFIVQZA7YJ
99.82m
52.087%
16.01%
31.903%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESHFBC56P
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIRMZ7QTE
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX2ET3OY1
Bio Rep 1, Tec Rep 1
in situ Hi-C on HUVEC cell with MboI
File
Alignments (bam)
4DNFIA5OQ5P7
279.34m
14.273%
14.562%
1.79%
10.842%
0.34%
Experiment
4DNEX81QMZAN
Bio Rep 1, Tec Rep 2
in situ Hi-C on HUVEC cell with MboI
File
Alignments (bam)
4DNFIGKQDTOR
159.63m
10.554%
12.78%
6.342%
7.789%
0.328%