ExperimentSetReplicate

ExperimentSet4DNESJ98FIW5
released
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in situ Hi-C on primary cardiomyocytes from the left atrium - donor 01199

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left atrium
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESJ98FIW5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7C7SR3Z
1.07 billion
36.274%
21.471%
42.255%
Experiment
4DNEXB1XRZUV
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFIJCEPTFH
524.96m
35.777%
20.852%
43.371%
Experiment
4DNEXJH74A1X
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFI5WS8M6X
549.04m
36.75%
22.063%
41.187%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJ98FIW5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIBNXTSV4
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXB1XRZUV
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIVTEWUGN
987.31m
13.609%
20.645%
7.362%
5.214%
0.197%
Experiment
4DNEXJH74A1X
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIWJCIFE2
1.04 billion
13.597%
21.173%
7.61%
4.815%
0.191%