ExperimentSetReplicate

ExperimentSet4DNESKIVBX1Q
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Chromatin tracing (ORCA) of a 30-Mb region on chr3 in mESC CTCF-AID untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 30-Mb chr3 (mouse)
Channel
Path
 
ch03
30-Mb chr3 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
30-Mb chr3 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

3 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX92RSKTH
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIOOBKZFO
FOF-CT - DNA-spot/trace core (csv)
2.07 MB
File
4DNFIG4VB7BD
FOF-CT - spot quality (csv)
658.7 kB
File
4DNFIPKGVT9D
FOF-CT - trace data (csv)
34.11 kB