ExperimentSetReplicate

ExperimentSet4DNESLRTOSQT
released
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Chromatin tracing (ORCA) of a 3-Mb region at the chr3 locus in mESC RAD21-AID untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with Rad21-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXS35KYH1
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFI4SYERQD
FOF-CT - DNA-spot/trace core (csv)
4.66 MB
File
4DNFIRU8162Y
FOF-CT - spot quality (csv)
1.34 MB
File
4DNFIY3XVUJY
FOF-CT - trace data (csv)
13.5 kB
Experiment
4DNEXSITJY3Z
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFILHN6ZHZ
FOF-CT - DNA-spot/trace core (csv)
10.07 MB
File
4DNFIGJLJZZI
FOF-CT - spot quality (csv)
2.9 MB
File
4DNFIA4O139A
FOF-CT - trace data (csv)
30.37 kB
Experiment
4DNEXMK6KOPM
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIPUTK6GO
FOF-CT - DNA-spot/trace core (csv)
9.93 MB
File
4DNFIOJXX6HX
FOF-CT - spot quality (csv)
2.76 MB
File
4DNFIR8V213V
FOF-CT - trace data (csv)
28.41 kB
File
4DNFIMGJPRYL
FOF-CT - cell data (csv)
31.14 kB