ExperimentSetReplicate

ExperimentSet4DNESLU4EMPB
released
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dilution Hi-C on DT40 CDK1as cells in prometaphase (7.5m post G2 block)

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
G. gallus
Sample Type 
immortalized cells
Sample 
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESLU4EMPB
Multiple Experiments
File
Contact List-combined (pairs)
4DNFICDR5ZVK
117m
33.316%
24.039%
42.644%
Experiment
4DNEXA2ECOH3
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFID6H4NPL
117m
33.316%
24.039%
42.644%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLU4EMPB
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI7OVUE1L
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXA2ECOH3
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFI555LUUM
174.69m
15.697%
10.704%
6.619%
0.002%
0.41%