ExperimentSetReplicate

ExperimentSet4DNESOK2M9XC
released
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in situ Hi-C on olfactory sensory neurons sorted from human olfactory epithelium - Control 187

   February 11th, 2021 at 4:40pm
Source Publication
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia.
Zazhytska M, Kodra A, et al., Cell 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MseI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESOK2M9XC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI6T5YBAJ
599.48m
50.951%
25.613%
23.436%
Experiment
4DNEXQ9462JR
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Contact List-replicate (pairs)
4DNFIRURE3JE
599.48m
50.951%
25.613%
23.436%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESOK2M9XC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI7V61PXA
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQ9462JR
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Alignments (bam)
4DNFIH6E9KRM
1.22 billion
6.665%
9.502%
30.269%
4.341%
0.217%