ExperimentSetReplicate

ExperimentSet4DNESOQNQHAD
released
View JSON

TBX5 ChIP-seq on wild-type WTC-11 iPSC cells differentiated for 11 days to atrial cardiac myocytes - the pulldown was done using an engineered TAP-tagged TBX5 and pulldown of the biotinylated protein with Streptavidin beads.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: TBX5 protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX65SHRTF
Bio Rep 1, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIAIXX5OZ
0.45
0.48
23.45m
Experiment
4DNEXWDI7IHV
Bio Rep 2, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFILLTNJQJ
0.14
0.21
12.48m