ExperimentSetReplicate

ExperimentSet4DNESOR73PUW
released
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TBX5 ChIP-seq on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes - the pulldown was done using an engineered TAP-tagged TBX5 and pulldown of the biotinylated protein with Streptavidin beads.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: TBX5 protein

9 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXOHZ8MUU
Bio Rep 1, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI11P7VCO
0.49
0.53
39.98m
Experiment
4DNEXUR8ANTP
Bio Rep 2, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI9YS4O2X
0.45
0.49
40.79m
Experiment
4DNEXAUM7MKK
Bio Rep 3, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI6EZ2IDG
0.13
0.21
19.13m
Experiment
4DNEX6WYTOVV
Bio Rep 4, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIHLV2J5G
0.47
0.5
27.71m
Experiment
4DNEXMSQ7BUH
Bio Rep 5, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIUDH2WK5
0.18
0.25
17.63m
Experiment
4DNEXCXNUUMN
Bio Rep 6, Tec Rep 1
ChIP-seq against TBX5 protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI3N4AX62
0.58
0.6
38m