ExperimentSetReplicate

ExperimentSet4DNESOSE2FYZ
released
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dilution Hi-C on CC2517 with HindIII and bio-dCTP

   April 9th, 2017 at 5:35pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
HUVEC cell
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESOSE2FYZ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEU7B3RD
131.22m
51.511%
28.836%
19.653%
Experiment
4DNEXPKYIZ7A
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HUVEC cell with HindIII
File
Contact List-replicate (pairs)
4DNFIIO9OYD9
131.22m
51.511%
28.836%
19.653%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESOSE2FYZ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFINKFRVWU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPKYIZ7A
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HUVEC cell with HindIII
File
Alignments (bam)
4DNFI7MQRZXO
160.71m
5.569%
10.391%
0.906%
1.478%
0.169%