ExperimentSetReplicate

ExperimentSet4DNESP15EH2N
released
View JSON

RNA-Seq on TCF-1 induced NIH 3T3 cells

   October 18th, 2022 at 3:53pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
NIH3T3
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
  1. Transient Transfection
  2. Chemical
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX8F2ZODL
Bio Rep 1, Tec Rep 1
RNA-seq on NIH3T3
File
Read Positions (bam)
4DNFIUBWGHAL
32.2m
25.47m
Experiment
4DNEXP7FNC9W
Bio Rep 2, Tec Rep 1
RNA-seq on NIH3T3
File
Read Positions (bam)
4DNFI21K9US5
25.8m
20.61m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX8F2ZODL
Bio Rep 1, Tec Rep 1
RNA-seq on NIH3T3
File
Gene Expression (tsv)
4DNFINA15ABY
20.19m
254.93k
Experiment
4DNEXP7FNC9W
Bio Rep 2, Tec Rep 1
RNA-seq on NIH3T3
File
Gene Expression (tsv)
4DNFI9TIFLF4
16.64m
212.4k